diff --git a/.github/workflows/workflow.yml b/.github/workflows/workflow.yml new file mode 100644 index 0000000..68ca354 --- /dev/null +++ b/.github/workflows/workflow.yml @@ -0,0 +1,13 @@ +name: github-actions-hello +on: [push] +jobs: + hello-job: + runs-on: ubuntu-latest + steps: + - name: Checkout repo + uses: actions/checkout@v2 + - name: Setup Python + uses: actions/setup-python@v2.2.2 + with: + python-version: '3.7' + - run: python3 --version diff --git a/IUM_10.DVC.ipynb b/IUM_10.DVC.ipynb index fba8869..ed175be 100644 --- a/IUM_10.DVC.ipynb +++ b/IUM_10.DVC.ipynb @@ -13,7 +13,7 @@ "
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Inżynieria uczenia maszynowego

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10. DVC [laboratoria]

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Tomasz Ziętkiewicz (2022)

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Tomasz Ziętkiewicz (2023)

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\n", "\n", "![Logo 2](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech2.jpg)" @@ -53,6 +53,41 @@ "- 5-minutowe wprowadzenie: https://www.youtube.com/watch?v=UbL7VUpv1Bs&t=197s" ] }, + { + "cell_type": "markdown", + "id": "3d4ce1cb", + "metadata": { + "slideshow": { + "slide_type": "slide" + } + }, + "source": [ + "## Śledzenie plików za pomocą DVC\n", + " - dużymi plikami, takimi jak plikami z danymi wejściowymi czy plikami modeli, trudno zarządza się za pomocą gita, ze względu na problemy z:\n", + " - wydajnością\n", + " - przestrzenią w repozytorium\n", + " - ograniczenia ze strony serwisu (np. [limit 100 MB na plik w Github](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-large-files-on-github))\n", + " - Git posiada rozszerzenie [lfs(Large File Storage)](https://git-lfs.github.com/), które stanowi pewne rozwiązanie tego problemu. \n", + " - Same pliki przechowywane są na specjalnym zdalnym serwerze, w repozytorium przechowywane są jedynie odnośniki do tych plików i pewne metadane\n", + " - Github ma zintegrowany LFS z [limitem 1GB dla kont bezpłatnych](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-storage-and-bandwidth-usage)" + ] + }, + { + "cell_type": "markdown", + "id": "dd8e529b", + "metadata": { + "slideshow": { + "slide_type": "slide" + } + }, + "source": [ + " - DVC proponuje podobne podejście co LFS, ale:\n", + " - pliki mogą być przechowywane na niemal dowolnym serwerze, również lokalnie\n", + " - brak limitu wielkości plików (w Git-LFS na Github [limit 2GB](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-git-large-file-storage))\n", + " - DVC zapewnia dodatkowe narzędzie umożliwiające śledzenie plików i ich powiązań z wynikami eksperymentów\n", + " - więcej, patrz [tutaj](https://dvc.org/doc/user-guide/related-technologies)" + ] + }, { "cell_type": "markdown", "id": "9bfb356e", @@ -70,437 +105,14 @@ }, { "cell_type": "code", - "execution_count": 7, + "execution_count": null, "id": "054c7a11", "metadata": { "slideshow": { "slide_type": "slide" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Collecting dvc\n", - "\u001b[33m Cache entry deserialization failed, entry ignored\u001b[0m\n", - " Downloading https://files.pythonhosted.org/packages/96/9d/9cca62742cb99da8002c9d6ac6c7463344deb60a219ca4f3a9778b02c67b/dvc-2.8.1-py3-none-any.whl (386kB)\n", - "\u001b[K 100% |████████████████████████████████| 389kB 1.4MB/s ta 0:00:01\n", - "\u001b[?25hCollecting setuptools>=34.0.0 (from dvc)\n", - " Using cached https://files.pythonhosted.org/packages/b0/3a/88b210db68e56854d0bcf4b38e165e03be377e13907746f825790f3df5bf/setuptools-59.6.0-py3-none-any.whl\n", - 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" copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " creating build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " running build_ext\n", - " generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n", - " creating build/temp.linux-x86_64-3.6\n", - " building 'pygit2._pygit2' extension\n", - " creating build/temp.linux-x86_64-3.6/src\n", - " x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n", - " In file included from src/blob.c:30:0:\n", - " src/blob.h:33:10: fatal error: git2.h: No such file or directory\n", - " #include \n", - " ^~~~~~~~\n", - " compilation terminated.\n", - " error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n", - " \n", - " ----------------------------------------\n", - "\u001b[31m Failed building wheel for pygit2\u001b[0m\n", - "\u001b[?25h Running setup.py clean for pygit2\n" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - " Running setup.py bdist_wheel for contextvars ... \u001b[?25ldone\n", - "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/a5/7d/68/1ebae2668bda2228686e3c1cf16f2c2384cea6e9334ad5f6de\n", - " Running setup.py bdist_wheel for atpublic ... \u001b[?25ldone\n", - "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/33/25/82/57d46b60a048f8e30b31f10497539498a3b826c78e2433c2d4\n", - " Running setup.py bdist_wheel for mailchecker ... \u001b[?25ldone\n", - "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/fd/e1/e7/804e77a70eac7103bdba2f4b3e1eba36840b38554a4b8152c8\n", - " Running setup.py bdist_wheel for ftfy ... \u001b[?25ldone\n", - "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/99/2c/e6/109c8a28fef7a443f67ba58df21fe1d0067ac3322e75e6b0b7\n", - " Running setup.py bdist_wheel for future ... \u001b[?25ldone\n", - "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/8b/99/a0/81daf51dcd359a9377b110a8a886b3895921802d2fc1b2397e\n", - " Running setup.py bdist_wheel for idna-ssl ... \u001b[?25ldone\n", - "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/d3/00/b3/32d613e19e08a739751dd6bf998cfed277728f8b2127ad4eb7\n", - "Successfully built nanotime flufl.lock psutil configobj pygtrie dulwich contextvars atpublic mailchecker ftfy future idna-ssl\n", - "Failed to build pygit2\n", - "Installing collected packages: setuptools, colorama, dictdiffer, ply, nanotime, asynctest, idna, multidict, typing-extensions, yarl, idna-ssl, frozenlist, async-timeout, aiosignal, charset-normalizer, attrs, aiohttp, certifi, urllib3, requests, fsspec, decorator, networkx, atpublic, flufl.lock, shtab, shortuuid, smmap, gitdb, gitpython, zipp, importlib-resources, tqdm, zc.lockfile, dataclasses, commonmark, pygments, rich, aiohttp-retry, voluptuous, psutil, six, importlib-metadata, flatten-dict, configobj, pygtrie, tabulate, dulwich, appdirs, ruamel.yaml.clib, ruamel.yaml, text-unidecode, python-slugify, python-fsutil, mailchecker, pyyaml, toml, xmltodict, phonenumbers, wcwidth, ftfy, python-dateutil, python-benedict, future, pyparsing, grandalf, dpath, pycparser, cffi, cached-property, pygit2, pyasn1, pathspec, immutables, contextvars, distro, packaging, diskcache, pydot, funcy, dvc\n", - " Running setup.py install for pygit2 ... \u001b[?25lerror\n", - " Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:\n", - " running install\n", - " /home/tomek/.local/lib/python3.6/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.\n", - " setuptools.SetuptoolsDeprecationWarning,\n", - " running build\n", - " running build_py\n", - " creating build\n", - " creating build/lib.linux-x86_64-3.6\n", - " creating build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n", - " creating build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", - " running build_ext\n", - " generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n", - " creating build/temp.linux-x86_64-3.6\n", - " building 'pygit2._pygit2' extension\n", - " creating build/temp.linux-x86_64-3.6/src\n", - " x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n", - " In file included from src/blob.c:30:0:\n", - " src/blob.h:33:10: fatal error: git2.h: No such file or directory\n", - " #include \n", - " ^~~~~~~~\n", - " compilation terminated.\n", - " error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n", - " \n", - " ----------------------------------------\n", - "\u001b[31mCommand \"/usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=\" failed with error code 1 in /tmp/pip-build-hr8mtrcf/pygit2/\u001b[0m\n", - "\u001b[?25h" - ] - } - ], + "outputs": [], "source": [ "!pip3 install dvc" ] @@ -519,39 +131,32 @@ }, { "cell_type": "code", - "execution_count": 1, - "id": "aae59ec2", + "execution_count": null, + "id": "4d94e912", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, "outputs": [], "source": [ - "!mkdir -p IUM_10/sample-ml-project" + "!rm -r -f IUM_10/sample-ml-project-2023\n", + "!mkdir -p IUM_10/sample-ml-project-2023" ] }, { "cell_type": "code", - "execution_count": 1, - "id": "1e522a93", + "execution_count": null, + "id": "aae59ec2", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "/home/tomek/repos/aitech-ium/IUM_10/sample-ml-project\n" - ] - } - ], + "outputs": [], "source": [ "#Jupyter notebook magic https://ipython.readthedocs.io/en/stable/interactive/magics.html#magic-cd\n", - "%cd \"IUM_10/sample-ml-project\"" + "%cd \"IUM_10/sample-ml-project-2023\"" ] }, { @@ -568,22 +173,14 @@ }, { "cell_type": "code", - "execution_count": 3, + "execution_count": null, "id": "c13c525b", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Reinitialized existing Git repository in /home/tomek/repos/aitech-ium/IUM_10/sample-ml-project/.git/\r\n" - ] - } - ], + "outputs": [], "source": [ "!git init" ] @@ -602,23 +199,14 @@ }, { "cell_type": "code", - "execution_count": 4, + "execution_count": null, "id": "44f28226", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\u001b[31mERROR\u001b[39m: failed to initiate DVC - '.dvc' exists. Use `-f` to force.\n", - "\u001b[0m" - ] - } - ], + "outputs": [], "source": [ "!dvc init" ] @@ -638,30 +226,33 @@ }, { "cell_type": "code", - "execution_count": 5, + "execution_count": null, "id": "d1aefe16", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "On branch master\r\n", - "Changes to be committed:\r\n", - " (use \"git restore --staged ...\" to unstage)\r\n", - "\t\u001b[32mmodified: .dvc/config\u001b[m\r\n", - "\r\n" - ] - } - ], + "outputs": [], "source": [ "!git status" ] }, + { + "cell_type": "markdown", + "id": "b16a62e6", + "metadata": { + "slideshow": { + "slide_type": "fragment" + } + }, + "source": [ + "- `.dvc/config` - główny plik konfiguracyjny dvc\n", + "- `.dvc/config.local` - nadpisuje wartości z `config`, do lokalnych zmian nie commitowanych do repo\n", + "- `.dvc/.gitignore` - pliki dvc, które nie mają znaleźć się w repo\n", + "- `.dvcignore` - dvc pomija pliki zdefiniowane w tym pliku (np. aby poprawić wydajność)" + ] + }, { "cell_type": "markdown", "id": "72e0a272", @@ -676,64 +267,19 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "id": "59780e99", "metadata": { "scrolled": true, "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "[master (root-commit) d00d0ac] Initial commit\r\n", - " 3 files changed, 6 insertions(+)\r\n", - " create mode 100644 .dvc/.gitignore\r\n", - " create mode 100644 .dvc/config\r\n", - " create mode 100644 .dvcignore\r\n" - ] - } - ], + "outputs": [], "source": [ "!git commit -m \"Initial commit\"" ] }, - { - "cell_type": "markdown", - "id": "3d4ce1cb", - "metadata": { - "slideshow": { - "slide_type": "slide" - } - }, - "source": [ - "## Śledzenie plików za pomocą DVC\n", - " - dużymi plikami, takimi jak plikami z danymi wejściowymi czy plikami modeli, trudno zarządza się za pomocą gita, ze względu na problemy z:\n", - " - wydajnością\n", - " - przestrzenią w repozytorium\n", - " - ograniczenia ze strony serwisu (np. [limit 100 MB na plik w Github](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-large-files-on-github))\n", - " - Git posiada rozszerzenie [lfs(Large File Storage)](https://git-lfs.github.com/), które stanowi pewne rozwiązanie tego problemu. Same pliki przechowywane są na specjalnym zdalnym serwerze, w repozytorium przechowywane są jedynie odnośniki do tych plików i pewne metadane" - ] - }, - { - "cell_type": "markdown", - "id": "dd8e529b", - "metadata": { - "slideshow": { - "slide_type": "slide" - } - }, - "source": [ - " - DVC proponuje podobne podejście, ale:\n", - " - pliki mogą być przechowywane na niemal dowolnym serwerze, również lokalnie\n", - " - brak limitu wielkości plików (w Git-LFS na Github [limit 2GB](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-git-large-file-storage))\n", - " - DVC zapewnia dodatkowe narzędzie umożliwiające śledzenie plików i ich powiązań z wynikami eksperymentów\n", - " - więcej, patrz [tutaj](https://dvc.org/doc/user-guide/related-technologies)" - ] - }, { "cell_type": "markdown", "id": "a8861abe", @@ -748,27 +294,14 @@ }, { "cell_type": "code", - "execution_count": 6, + "execution_count": null, "id": "f05ece1b", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Downloading iris.zip to /home/tomek/repos/aitech-ium/IUM_10/sample-ml-project\n", - " 0%| | 0.00/3.60k [00:00...\" to unstage)\r\n", - "\t\u001b[32mmodified: .dvc/config\u001b[m\r\n", - "\r\n", - "Changes not staged for commit:\r\n", - " (use \"git add ...\" to update what will be committed)\r\n", - " (use \"git restore ...\" to discard changes in working directory)\r\n", - "\t\u001b[31mmodified: data/Iris.csv.dvc\u001b[m\r\n", - "\r\n" - ] - } - ], + "outputs": [], "source": [ "!git status -u" ] @@ -893,11 +377,11 @@ }, { "cell_type": "code", - "execution_count": 9, + "execution_count": null, "id": "460c4a17", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, "outputs": [], @@ -907,23 +391,14 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": null, "id": "80644077", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "[master b37a8d8] Dodano dane IRIS (DVC)\r\n", - " 2 files changed, 2 insertions(+), 6 deletions(-)\r\n" - ] - } - ], + "outputs": [], "source": [ "!git commit -m \"Dodano dane IRIS (DVC)\"" ] @@ -946,16 +421,12 @@ "id": "8cb2ba7c", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, "outputs": [], "source": [ - "# %load data/Iris.csv.dvc\n", - "outs:\n", - "- md5: 717820ef0af287ff346c5cabfb4c612c\n", - " size: 5107\n", - " path: Iris.csv\n" + "# %load data/Iris.csv.dvc\n" ] }, { @@ -972,49 +443,41 @@ }, { "cell_type": "code", - "execution_count": 16, + "execution_count": null, "id": "1d471f3a", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "total 8\r\n", - "-r--r--r-- 1 tomek tomek 5107 Sep 19 2019 7820ef0af287ff346c5cabfb4c612c\r\n" - ] - } - ], + "outputs": [], "source": [ "!ls -l .dvc/cache/71" ] }, { "cell_type": "code", - "execution_count": 17, - "id": "f86a5b55", + "execution_count": null, + "id": "32531aa8", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "total 8\r\n", - "-rw-r--r-- 1 tomek tomek 5107 May 29 09:19 Iris.csv\r\n", - "-rw-r--r-- 1 tomek tomek 76 May 29 09:19 Iris.csv.dvc\r\n" - ] - } - ], + "outputs": [], "source": [ - "!ls -l ./data" + "!head -n 3 .dvc/cache/71/7820ef0af287ff346c5cabfb4c612c" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "2396c762", + "metadata": {}, + "outputs": [], + "source": [ + "!git remote add origin git@git.wmi.amu.edu.pl:tzietkiewicz/sample-ml-project.git\n", + "!git push --set-upstream origin main" ] }, { @@ -1058,70 +521,55 @@ ] }, { - "cell_type": "code", - "execution_count": 71, - "id": "a16f2bfa", + "cell_type": "markdown", + "id": "507e3a09", "metadata": { "slideshow": { "slide_type": "slide" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Setting 'my_local_remote' as a default remote.\n", - "\u001b[0m" - ] + "source": [ + "#### Dodawanie remote typu local" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "a16f2bfa", + "metadata": { + "slideshow": { + "slide_type": "fragment" } - ], + }, + "outputs": [], "source": [ "!dvc remote add -d my_local_remote /dvcstore" ] }, { "cell_type": "code", - "execution_count": 25, + "execution_count": null, "id": "9c3deeaf", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "On branch master\r\n", - "nothing to commit, working tree clean\r\n" - ] - } - ], + "outputs": [], "source": [ "!git status" ] }, { "cell_type": "code", - "execution_count": 26, + "execution_count": null, "id": "899eac7d", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "On branch master\r\n", - "nothing to commit, working tree clean\r\n" - ] - } - ], + "outputs": [], "source": [ "!git add .dvc/config\n", "!git commit -m \"Added DVC remote\"" @@ -1142,53 +590,28 @@ }, { "cell_type": "code", - "execution_count": 28, + "execution_count": null, "id": "c7f24f75", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - " 0% Transferring| |0/1 [00:00\n", - "\tchanged outs:\n", - "\t\tmodified: data/Iris.csv\n", - "\u001b[0m" - ] - } - ], + "outputs": [], "source": [ "!dvc status" ] }, { "cell_type": "code", - "execution_count": 15, + "execution_count": null, "id": "bf6c1067", "metadata": { "slideshow": { "slide_type": "slide" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\u001b[2K\u001b[32m⠹\u001b[0m Checking graph \u001b[32m⠋\u001b[0m Checking graph\n", - "Adding... \n", - "!\u001b[A\n", - " 0% Checking cache in '/home/tomek/repos/aitech-ium/IUM_10/sample-ml-project/.d\u001b[A\n", - " \u001b[A\n", - "!\u001b[A\n", - " 0%| |Transferring 0/1 [00:00 'data/data.xml'\n", - " 0% Downloading| |0/1 [00:00 2021.5.30-ha878542_0\n", - " certifi 2020.12.5-py39hf3d152e_1 --> 2021.5.30-py39hf3d152e_0\n", - " dvc 2.1.0-py39hf3d152e_0 --> 2.3.0-py39hf3d152e_0\n", - " fsspec 0.9.0-pyhd8ed1ab_2 --> 2021.5.0-pyhd8ed1ab_0\n", - "\n", - "\n", - "\n", - "Downloading and Extracting Packages\n", - "certifi-2021.5.30 | 141 KB | ##################################### | 100% \n", - "fsspec-2021.5.0 | 77 KB | ##################################### | 100% \n", - "dvc-2.3.0 | 542 KB | ##################################### | 100% \n", - "invoke-1.5.0 | 137 KB | ##################################### | 100% \n", - "paramiko-2.7.2 | 135 KB | ##################################### | 100% \n", - "bcrypt-3.2.0 | 44 KB | ##################################### | 100% \n", - "pynacl-1.4.0 | 1.3 MB | ##################################### | 100% \n", - "dvc-ssh-2.3.0 | 9 KB | ##################################### | 100% \n", - "ca-certificates-2021 | 136 KB | ##################################### | 100% \n", - "Preparing transaction: done\n", - "Verifying transaction: done\n", - "Executing transaction: done\n", - "\n", - "Note: you may need to restart the kernel to use updated packages.\n" + "Solving environment: \\ " ] } ], @@ -1767,46 +913,55 @@ }, { "cell_type": "code", - "execution_count": 17, - "id": "e9a04876", + "execution_count": null, + "id": "9662b7aa", + "metadata": { + "slideshow": { + "slide_type": "fragment" + } + }, + "outputs": [], + "source": [ + "## Poniższe są potrzebne, żeby polecania dvc remote działały:\n", + "!sudo apt install libssl3 libffi7" + ] + }, + { + "cell_type": "markdown", + "id": "04c41da0", "metadata": { "slideshow": { "slide_type": "slide" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "Setting 'ium_ssh_remote' as a default remote.\n", - "\u001b[0m" - ] + "source": [ + "Dodajemy remote:" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "e9a04876", + "metadata": { + "slideshow": { + "slide_type": "fragment" } - ], + }, + "outputs": [], "source": [ "!dvc remote add -f -d ium_ssh_remote ssh://ium-sftp@tzietkiewicz.vm.wmi.amu.edu.pl" ] }, { "cell_type": "code", - "execution_count": 18, + "execution_count": null, "id": "e3f27bbb", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "ium_ssh_remote\tssh://ium-sftp@tzietkiewicz.vm.wmi.amu.edu.pl\n", - "\u001b[0m" - ] - } - ], + "outputs": [], "source": [ "!dvc remote list" ] @@ -1814,56 +969,51 @@ { "cell_type": "markdown", "id": "c92edd7b", - "metadata": {}, + "metadata": { + "slideshow": { + "slide_type": "slide" + } + }, "source": [ "Zapisujemy hasło:" ] }, { "cell_type": "code", - "execution_count": 19, + "execution_count": null, "id": "5b2fa175", "metadata": { "slideshow": { - "slide_type": "slide" + "slide_type": "fragment" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "\u001b[0m" - ] - } - ], + "outputs": [], "source": [ "!dvc remote modify --local ium_ssh_remote password IUM@2021" ] }, { - "cell_type": "code", - "execution_count": 20, - "id": "ea6e16fa", + "cell_type": "markdown", + "id": "8b83049b", "metadata": { "slideshow": { "slide_type": "slide" } }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - " 0% Transferring| |0/1 [00:00 master\n", - "Branch 'master' set up to track remote branch 'master' from 'origin'.\n" - ] - } - ], - "source": [ - "!git remote add origin git@git.wmi.amu.edu.pl:tzietkiewicz/sample-ml-project.git\n", - "!git push --set-upstream origin master" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "67896105", - "metadata": {}, - "outputs": [], - "source": [] } ], "metadata": { @@ -1976,7 +1069,7 @@ "celltoolbar": "Slideshow", "email": "tomasz.zietkiewicz@amu.edu.pl", "kernelspec": { - "display_name": "Python 3 (ipykernel)", + "display_name": "Python 3", "language": "python", "name": "python3" }, @@ -1991,7 +1084,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.4" + "version": "3.9.12" }, "slideshow": { "slide_type": "slide" diff --git a/IUM_11.CML.ipynb b/IUM_11.CML.ipynb index cd789cd..0d7595b 100644 --- a/IUM_11.CML.ipynb +++ b/IUM_11.CML.ipynb @@ -12,8 +12,8 @@ "![Logo 1](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech1.jpg)\n", "
\n", "

Inżynieria uczenia maszynowego

\n", - "

11. Github actions i CML [laboratoria]

\n", - "

Tomasz Ziętkiewicz (2022)

\n", + "

11. Github actions [laboratoria]

\n", + "

Tomasz Ziętkiewicz (2023)

\n", "
\n", "\n", "![Logo 2](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech2.jpg)" @@ -70,8 +70,8 @@ "source": [ "### Terminologia Github Actions\n", " - *Workflow* - workflow odpowiada \"Pipeline\" z Jenkinsa.\n", - " - *Event* - zdażenie, które odapala (\"triggers\") uruchomienie \"Workflow\". Np. wypchnięcie zmiany do repozytorium (\"push\"), utworzenie Pull requesta. [Pełna lista](https://docs.github.com/en/actions/reference/events-that-trigger-workflows)\n", - " - *Job* - workflow składa się z jednego lub kilku \"jobs\". Każdy z nich może być wykonywany równolegle na innej maszynie (patrz \"runner\")\n", + " - *Event* - zdarzenie, które odapala (\"triggers\") \"Workflow\". Np. wypchnięcie zmiany do repozytorium (\"push\"), utworzenie Pull requesta. [Pełna lista](https://docs.github.com/en/actions/reference/events-that-trigger-workflows)\n", + " - *Job* - workflow składa się z jednego lub kilku zadań (\"jobs\"). Każde z nich może być wykonywane równolegle na innej maszynie (patrz \"runner\")\n", " - *Step* - odpowiednik \"Stage\" z Jenkinsa - służu do grupowania \"Actions\"\n", " - *Action/command* - odpowiednik \"Step\" z Jenkinsa - pojedyncze polecenie do wykonania, np. dodanie komentarze do Pull requesta, wykonanie polecenia systemowego itp.\n", " - *Runner* - odpowiednik Jenkinsowego \"Agent\" - serwer, na którym mogą być wykonywane zadania (\"jobs\")\n", @@ -103,33 +103,7 @@ }, { "cell_type": "code", - "execution_count": 1, - "id": "955585a9", - "metadata": { - "slideshow": { - "slide_type": "slide" - } - }, - "outputs": [ - { - "name": "stdout", - "output_type": "stream", - "text": [ - "/home/tomek/AITech/repo/aitech-ium-private/IUM_11\n", - "Initialized empty Git repository in /home/tomek/AITech/repo/aitech-ium-private/IUM_11/github-actions-hello/.git/\r\n" - ] - } - ], - "source": [ - "%cd IUM_11\n", - "!mkdir github-actions-hello;\\\n", - "cd github-actions-hello;\\\n", - "git init" - ] - }, - { - "cell_type": "code", - "execution_count": 5, + "execution_count": 16, "id": "f4916c1f", "metadata": { "slideshow": { @@ -141,18 +115,49 @@ "name": "stdout", "output_type": "stream", "text": [ - "/home/tomek/AITech/repo/aitech-ium-private/IUM_11/github-actions-hello\n" + "/home/tomek/repos/aitech-ium/IUM_11/github-actions-hello\n" ] } ], "source": [ - "%cd github-actions-hello\n", + "!mkdir -p IUM_11/github-actions-hello\n", + "%cd IUM_11/github-actions-hello\n", "!mkdir -p .github/workflows" ] }, { "cell_type": "code", - "execution_count": 6, + "execution_count": 19, + "id": "33abf69d", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Reinitialized existing Git repository in /home/tomek/repos/aitech-ium/IUM_11/github-actions-hello/.git/\n", + "Enumerating objects: 6, done.\n", + "Counting objects: 100% (6/6), done.\n", + "Delta compression using up to 4 threads\n", + "Compressing objects: 100% (4/4), done.\n", + "Writing objects: 100% (6/6), 780 bytes | 780.00 KiB/s, done.\n", + "Total 6 (delta 0), reused 0 (delta 0), pack-reused 0\n", + "To github.com:TomekZet/ium-ga-hello.git\n", + " * [new branch] main -> main\n", + "Branch 'main' set up to track remote branch 'main' from 'origin'.\n" + ] + } + ], + "source": [ + "!git init\n", + "!git branch -M main\n", + "!git remote add origin git@github.com:TomekZet/ium-ga-hello.git\n", + "!git push -u origin main" + ] + }, + { + "cell_type": "code", + "execution_count": 20, "id": "dde8d432", "metadata": { "slideshow": { @@ -164,7 +169,7 @@ "name": "stdout", "output_type": "stream", "text": [ - "Writing .github/workflows/workflow.yml\n" + "Overwriting .github/workflows/workflow.yml\n" ] } ], @@ -185,6 +190,144 @@ " - run: python3 --version" ] }, + { + "cell_type": "code", + "execution_count": 22, + "id": "780f41d6", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "On branch main\n", + "Your branch is up to date with 'origin/main'.\n", + "\n", + "nothing to commit, working tree clean\n", + "Everything up-to-date\n" + ] + } + ], + "source": [ + "!git add .github/workflows/workflow.yml\n", + "!git commit -m \"Github Actions Workflow\"\n", + "!git push" + ] + }, + { + "cell_type": "markdown", + "id": "b56a1b02", + "metadata": {}, + "source": [ + "### Zakładka actions na stronie repozytorium:\n", + "https://github.com/TomekZet/ium-ga-hello/actions" + ] + }, + { + "cell_type": "code", + "execution_count": 27, + "id": "e3be3eb3", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "total 16\r\n", + "drwxr-sr-x 2 tomek tomek 4096 May 17 11:51 .\r\n", + "drwxr-sr-x 3 tomek tomek 4096 May 17 11:51 ..\r\n", + "-rw-r--r-- 1 tomek tomek 456 May 17 11:51 parametrized.yml\r\n", + "-rw-r--r-- 1 tomek tomek 305 May 17 12:01 workflow.yml\r\n" + ] + } + ], + "source": [ + "!ls -al .github/workflows" + ] + }, + { + "cell_type": "markdown", + "id": "b40a7f62", + "metadata": {}, + "source": [ + "### Ręczne wywoływanie\n", + "Workflow można również wywołać ręcznie, podając parametry.\n", + "Więcej informacji np. tutaj: https://github.blog/changelog/2020-07-06-github-actions-manual-triggers-with-workflow_dispatch/" + ] + }, + { + "cell_type": "code", + "execution_count": 42, + "id": "132d8d16", + "metadata": { + "slideshow": { + "slide_type": "slide" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Overwriting .github/workflows/parametrized.yml\n" + ] + } + ], + "source": [ + "%%writefile .github/workflows/parametrized.yml\n", + "name: github-actions-hello-parametrized\n", + "on: \n", + " workflow_dispatch:\n", + " inputs:\n", + " input_text:\n", + " description: 'Text to display' \n", + " required: true\n", + " default: 'Hello World'\n", + "jobs:\n", + " hello-job:\n", + " runs-on: ubuntu-latest\n", + " steps:\n", + " - name: Checkout repo\n", + " uses: actions/checkout@v2\n", + " - name: Install dependencies\n", + " run:\n", + " sudo apt update;\n", + " sudo apt install -y figlet\n", + " - name: Write\n", + " run:\n", + " figlet \"${{ github.event.inputs.input_text }}\"" + ] + }, + { + "cell_type": "code", + "execution_count": 43, + "id": "c4e71172", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "[main a98938d] just dispatch\n", + " 1 file changed, 6 deletions(-)\n", + "Enumerating objects: 9, done.\n", + "Counting objects: 100% (9/9), done.\n", + "Delta compression using up to 4 threads\n", + "Compressing objects: 100% (3/3), done.\n", + "Writing objects: 100% (5/5), 411 bytes | 411.00 KiB/s, done.\n", + "Total 5 (delta 1), reused 0 (delta 0), pack-reused 0\n", + "remote: Resolving deltas: 100% (1/1), completed with 1 local object.\u001b[K\n", + "To github.com:TomekZet/ium-ga-hello.git\n", + " 6c4a361..a98938d main -> main\n" + ] + } + ], + "source": [ + "!git add -u .github/workflows\n", + "!git commit -m \"just dispatch\"\n", + "!git push" + ] + }, { "cell_type": "markdown", "id": "ed780dea", @@ -219,6 +362,194 @@ " - z [Github Marketplace](https://github.com/marketplace?type=actions)" ] }, + { + "cell_type": "markdown", + "id": "a0628b12", + "metadata": {}, + "source": [ + "### Akcje wykonywane w kontenerze Docker\n", + "Akcja może być wywołana w kontenerze Docker (pobranym z Docker hub albo zbudowanym z Dockerfile)\n", + "W tym celu należy stworzyć własną akcję w pliku action.yaml i potem użyć jej w Workflow" + ] + }, + { + "cell_type": "code", + "execution_count": 59, + "id": "b8222161", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Overwriting action.yml\n" + ] + } + ], + "source": [ + "%%writefile action.yml\n", + "name: 'Hello World'\n", + "description: 'Greet someone and record the time'\n", + "inputs:\n", + " who-to-greet: # id of input\n", + " description: 'Who to greet'\n", + " required: true\n", + " default: 'World'\n", + "outputs:\n", + " time: # id of output\n", + " description: 'The time we greeted you'\n", + "runs:\n", + " using: 'docker'\n", + " image: 'Dockerfile'\n", + " args:\n", + " - ${{ inputs.who-to-greet }}" + ] + }, + { + "cell_type": "code", + "execution_count": 47, + "id": "80883b9e", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Overwriting Dockerfile\n" + ] + } + ], + "source": [ + "%%writefile Dockerfile\n", + "# Container image that runs your code\n", + "FROM ubuntu:latest\n", + " \n", + "RUN apt update && apt install -y figlet\n", + "\n", + "# Copies your code file from your action repository to the filesystem path `/` of the container\n", + "COPY entrypoint.sh /entrypoint.sh\n", + "\n", + "# Code file to execute when the docker container starts up (`entrypoint.sh`)\n", + "ENTRYPOINT [\"/entrypoint.sh\"]" + ] + }, + { + "cell_type": "code", + "execution_count": 50, + "id": "f98fee9a", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Writing entrypoint.sh\n" + ] + } + ], + "source": [ + "%%writefile entrypoint.sh\n", + "#!/bin/sh -l\n", + "\n", + "figlet \"Hello $1\"\n", + "time=$(date)\n", + "echo \"time=$time\" >> $GITHUB_OUTPUT" + ] + }, + { + "cell_type": "code", + "execution_count": 60, + "id": "352de060", + "metadata": {}, + "outputs": [], + "source": [ + "!chmod +x entrypoint.sh" + ] + }, + { + "cell_type": "code", + "execution_count": 57, + "id": "d73fb6c4", + "metadata": { + "slideshow": { + "slide_type": "slide" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Overwriting .github/workflows/docker.yml\n" + ] + } + ], + "source": [ + "%%writefile .github/workflows/docker.yml\n", + "name: github-actions-hello-docker\n", + "on: \n", + " workflow_dispatch:\n", + " inputs:\n", + " input_text:\n", + " description: 'Who to greet' \n", + " required: true\n", + " default: 'World'\n", + "jobs:\n", + " hello-job:\n", + " runs-on: ubuntu-latest\n", + " steps:\n", + " - name: Checkout repo\n", + " uses: actions/checkout@v2\n", + " - name: Use docker action\n", + " uses: ./\n", + " with:\n", + " who-to-greet: \"${{ github.event.inputs.input_text }}\"\n", + " # Use the output from the `hello` step\n", + " - name: Get the output time\n", + " run: echo \"The time was ${{ steps.hello.outputs.time }}\"\n", + " \n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 61, + "id": "94d8eec0", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "[main 97c7272] Fix path\n", + " 1 file changed, 0 insertions(+), 0 deletions(-)\n", + " mode change 100644 => 100755 entrypoint.sh\n", + "Enumerating objects: 3, done.\n", + "Counting objects: 100% (3/3), done.\n", + "Delta compression using up to 4 threads\n", + "Compressing objects: 100% (2/2), done.\n", + "Writing objects: 100% (2/2), 232 bytes | 232.00 KiB/s, done.\n", + "Total 2 (delta 1), reused 0 (delta 0), pack-reused 0\n", + "remote: Resolving deltas: 100% (1/1), completed with 1 local object.\u001b[K\n", + "To github.com:TomekZet/ium-ga-hello.git\n", + " 0f9de38..97c7272 main -> main\n" + ] + } + ], + "source": [ + "!git add .github entrypoint.sh Dockerfile\n", + "!git commit -m \"Fix path\"\n", + "!git push" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "9c396330", + "metadata": {}, + "outputs": [], + "source": [] + }, { "cell_type": "markdown", "id": "805622e8", @@ -562,7 +893,7 @@ "author": "Tomasz Ziętkiewicz", "email": "tomasz.zietkiewicz@amu.edu.pl", "kernelspec": { - "display_name": "Python 3 (ipykernel)", + "display_name": "Python 3", "language": "python", "name": "python3" }, @@ -577,7 +908,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.10.4" + "version": "3.9.16" }, "slideshow": { "slide_type": "slide" diff --git a/IUM_11/github-actions-hello b/IUM_11/github-actions-hello new file mode 160000 index 0000000..97c7272 --- /dev/null +++ b/IUM_11/github-actions-hello @@ -0,0 +1 @@ +Subproject commit 97c7272bcaccf4a578615526b71ca723bb2b6d00