andre/blas-benchmarks
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added cuBLAS;

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minor changes
This commit is contained in:
Andrzej Wójtowicz 2016-05-03 12:09:43 +02:00
parent 6e637d14bc
commit 3320ca2a94
2 changed files with 70 additions and 70 deletions
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1
.gitignore vendored
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@ -16,3 +16,4 @@ vignettes/*.pdf
# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3 # OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth .httr-oauth
cpuinfo

139
install-env.sh
View File

@ -8,7 +8,7 @@ DIR_BLAP="/opt/blap-lib"
function mro_install { function mro_install {
echo "Started installing Microsoft R Open and dependencies." echo "Started installing Microsoft R Open and dependencies"
# update debian repos & upgrade packages # update debian repos & upgrade packages
apt-get update apt-get update
@ -44,7 +44,7 @@ function mro_install {
# clean archives # clean archives
apt-get clean apt-get clean
echo "Finished installing Microsoft R Open and dependencies." echo "Finished installing Microsoft R Open and dependencies"
} }
############################################################## ##############################################################
@ -64,7 +64,7 @@ DIR_NETLIB="${DIR_BLAP}/netlib"
function netlib_install { function netlib_install {
echo "Started installing netlib." echo "Started installing netlib"
mkdir ${DIR_NETLIB} mkdir ${DIR_NETLIB}
@ -88,7 +88,7 @@ function netlib_check {
LD_PRELOAD="${DIR_NETLIB}/libblas.so.3.0 ${DIR_NETLIB}/liblapack.so.3.0" ${R_SAMPLE_BENCHMARK} LD_PRELOAD="${DIR_NETLIB}/libblas.so.3.0 ${DIR_NETLIB}/liblapack.so.3.0" ${R_SAMPLE_BENCHMARK}
echo "Finished checking netlib." echo "Finished checking netlib"
} }
############################################################## ##############################################################
@ -102,7 +102,7 @@ DIR_ATLAS_ST="${DIR_BLAP}/atlas-st"
function atlas_st_install { function atlas_st_install {
echo "Started installing ATLAS (single-threaded)." echo "Started installing ATLAS (single-threaded)"
mkdir ${DIR_ATLAS_ST} mkdir ${DIR_ATLAS_ST}
@ -118,16 +118,16 @@ function atlas_st_install {
echo "Installed files:" echo "Installed files:"
find ${DIR_ATLAS_ST} -type f find ${DIR_ATLAS_ST} -type f
echo "Finished installing ATLAS (single-threaded)." echo "Finished installing ATLAS (single-threaded)"
} }
function atlas_st_check { function atlas_st_check {
echo "Started checking ATLAS (single-threaded)." echo "Started checking ATLAS (single-threaded)"
LD_PRELOAD="${DIR_ATLAS_ST}/libatlas.so.3 ${DIR_ATLAS_ST}/libblas.so.3 ${DIR_ATLAS_ST}/liblapack.so.3" ${R_SAMPLE_BENCHMARK} LD_PRELOAD="${DIR_ATLAS_ST}/libatlas.so.3 ${DIR_ATLAS_ST}/libblas.so.3 ${DIR_ATLAS_ST}/liblapack.so.3" ${R_SAMPLE_BENCHMARK}
echo "Finished checking ATLAS (single-threaded)." echo "Finished checking ATLAS (single-threaded)"
} }
############################################################## ##############################################################
@ -141,7 +141,7 @@ DIR_OPENBLAS="${DIR_BLAP}/openblas"
function openblas_install { function openblas_install {
echo "Started installing OpenBLAS." echo "Started installing OpenBLAS"
mkdir ${DIR_OPENBLAS} mkdir ${DIR_OPENBLAS}
@ -157,16 +157,16 @@ function openblas_install {
echo "Installed files:" echo "Installed files:"
find ${DIR_OPENBLAS} -type f find ${DIR_OPENBLAS} -type f
echo "Finished installing OpenBLAS." echo "Finished installing OpenBLAS"
} }
function openblas_check { function openblas_check {
echo "Started checking OpenBLAS." echo "Started checking OpenBLAS"
LD_PRELOAD="${DIR_OPENBLAS}/libopenblas.so.0 ${DIR_OPENBLAS}/libblas.so.3 ${DIR_OPENBLAS}/liblapack.so.3" ${R_SAMPLE_BENCHMARK} LD_PRELOAD="${DIR_OPENBLAS}/libopenblas.so.0 ${DIR_OPENBLAS}/libblas.so.3 ${DIR_OPENBLAS}/liblapack.so.3" ${R_SAMPLE_BENCHMARK}
echo "Finished checking OpenBLAS." echo "Finished checking OpenBLAS"
} }
############################################################## ##############################################################
@ -180,7 +180,7 @@ DIR_ATLAS_MT="${DIR_BLAP}/atlas-mt"
function atlas_mt_install { function atlas_mt_install {
echo "Started installing ATLAS (multi-threaded)." echo "Started installing ATLAS (multi-threaded)"
mkdir ${DIR_ATLAS_MT} mkdir ${DIR_ATLAS_MT}
@ -205,16 +205,16 @@ function atlas_mt_install {
echo "Installed files:" echo "Installed files:"
find ${DIR_ATLAS_MT} -type f find ${DIR_ATLAS_MT} -type f
echo "Finished installing ATLAS (multi-threaded)." echo "Finished installing ATLAS (multi-threaded)"
} }
function atlas_mt_check { function atlas_mt_check {
echo "Started checking ATLAS (multi-threaded)." echo "Started checking ATLAS (multi-threaded)"
LD_PRELOAD="${DIR_ATLAS_MT}/libtatlas.so" ${R_SAMPLE_BENCHMARK} LD_PRELOAD="${DIR_ATLAS_MT}/libtatlas.so" ${R_SAMPLE_BENCHMARK}
echo "Finished checking ATLAS (multi-threaded)." echo "Finished checking ATLAS (multi-threaded)"
} }
############################################################## ##############################################################
@ -228,7 +228,7 @@ DIR_GOTOBLAS2="${DIR_BLAP}/gotoblas2"
function gotoblas2_install { function gotoblas2_install {
echo "Started installing GotoBLAS2." echo "Started installing GotoBLAS2"
mkdir ${DIR_GOTOBLAS2} mkdir ${DIR_GOTOBLAS2}
@ -250,12 +250,12 @@ function gotoblas2_install {
echo "Installed files:" echo "Installed files:"
find ${DIR_GOTOBLAS2} -type f find ${DIR_GOTOBLAS2} -type f
echo "Finished installing GotoBLAS2." echo "Finished installing GotoBLAS2"
} }
function gotoblas2_check { function gotoblas2_check {
echo "Started checking GotoBLAS2." echo "Started checking GotoBLAS2"
echo "${DIR_GOTOBLAS2}" > /etc/ld.so.conf.d/gotoblas2.conf echo "${DIR_GOTOBLAS2}" > /etc/ld.so.conf.d/gotoblas2.conf
ldconfig ldconfig
@ -267,7 +267,7 @@ function gotoblas2_check {
ldconfig ldconfig
rm sample-benchmark-gotoblas2.R rm sample-benchmark-gotoblas2.R
echo "Finished checking GotoBLAS2." echo "Finished checking GotoBLAS2"
} }
############################################################## ##############################################################
@ -281,7 +281,7 @@ DIR_MKL="${DIR_BLAP}/mkl"
function mkl_install { function mkl_install {
echo "Started installing MKL." echo "Started installing MKL"
mkdir ${DIR_MKL} mkdir ${DIR_MKL}
@ -296,16 +296,16 @@ function mkl_install {
echo "Installed files:" echo "Installed files:"
find ${DIR_MKL} -type f find ${DIR_MKL} -type f
echo "Finished installing MKL." echo "Finished installing MKL"
} }
function mkl_check { function mkl_check {
echo "Started checking MKL." echo "Started checking MKL"
LD_PRELOAD="${DIR_MKL}/libRblas.so ${DIR_MKL}/libRlapack.so ${DIR_MKL}/libmkl_vml_mc3.so ${DIR_MKL}/libmkl_vml_def.so ${DIR_MKL}/libmkl_gnu_thread.so ${DIR_MKL}/libmkl_core.so ${DIR_MKL}/libmkl_gf_lp64.so ${DIR_MKL}/libiomp5.so ${DIR_MKL}/libmkl_gf_ilp64.so" MKL_INTERFACE_LAYER="GNU,LP64" MKL_THREADING_LAYER="GNU" ${R_SAMPLE_BENCHMARK} LD_PRELOAD="${DIR_MKL}/libRblas.so ${DIR_MKL}/libRlapack.so ${DIR_MKL}/libmkl_vml_mc3.so ${DIR_MKL}/libmkl_vml_def.so ${DIR_MKL}/libmkl_gnu_thread.so ${DIR_MKL}/libmkl_core.so ${DIR_MKL}/libmkl_gf_lp64.so ${DIR_MKL}/libiomp5.so ${DIR_MKL}/libmkl_gf_ilp64.so" MKL_INTERFACE_LAYER="GNU,LP64" MKL_THREADING_LAYER="GNU" ${R_SAMPLE_BENCHMARK}
echo "Finished checking MKL." echo "Finished checking MKL"
} }
############################################################## ##############################################################
@ -319,7 +319,7 @@ DIR_BLIS="${DIR_BLAP}/blis"
function blis_install { function blis_install {
echo "Started installing BLIS." echo "Started installing BLIS"
mkdir ${DIR_BLIS} mkdir ${DIR_BLIS}
@ -338,17 +338,17 @@ function blis_install {
echo "Installed files:" echo "Installed files:"
find ${DIR_BLIS} -type f find ${DIR_BLIS} -type f
echo "Finished installing BLIS." echo "Finished installing BLIS"
} }
function blis_check { function blis_check {
echo "Started checking BLIS." echo "Started checking BLIS"
# TODO: auto set variables according to https://github.com/flame/blis/wiki/Multithreading # TODO: auto set variables according to https://github.com/flame/blis/wiki/Multithreading
LD_PRELOAD="${DIR_BLIS}/libblis.so" BLIS_JC_NT=2 BLIS_IC_NT=1 BLIS_JR_NT=1 BLIS_IR_NT=1 ${R_SAMPLE_BENCHMARK} LD_PRELOAD="${DIR_BLIS}/libblis.so" BLIS_JC_NT=2 BLIS_IC_NT=1 BLIS_JR_NT=1 BLIS_IR_NT=1 ${R_SAMPLE_BENCHMARK}
echo "Finished checking BLIS." echo "Finished checking BLIS"
} }
############################################################## ##############################################################
@ -357,29 +357,6 @@ function blis_check {
############################################################## ##############################################################
############################################################## ##############################################################
##############################################################
# clBLAS #
# - https://github.com/clMathLibraries/clBLAS #
# - BLAS #
# - OpenCL #
##############################################################
function clblas_install {
echo "Started installing clBLAS."
wget ${WGET_OPTIONS} https://github.com/clMathLibraries/clBLAS/archive/v2.10.tar.gz -O clBLAS-2.10.tar.gz
tar -xvzf clBLAS-2.10.tar.gz
rm clBLAS-2.10.tar.gz
#cd clBLAS-2.10
#
#cd ..
echo "TODO!"
echo "Finished installing clBLAS."
}
############################################################## ##############################################################
# cuBLAS (NVBLAS) # # cuBLAS (NVBLAS) #
# - https://developer.nvidia.com/cublas # # - https://developer.nvidia.com/cublas #
@ -389,26 +366,19 @@ function clblas_install {
function cublas_install { function cublas_install {
echo "Started installing cuBLAS." echo "Started installing cuBLAS"
# TODO: cuSOLVE (dense, LAPACK)? # TODO: cuSOLVE (dense, LAPACK)?
mkdir /opt/blap-lib/cublas mkdir /opt/blap-lib/cublas
# Ubuntu dependencies modprobe -r nouveau
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/x/x-kit/python3-xkit_0.5.0ubuntu2_all.deb
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/s/screen-resolution-extra/screen-resolution-extra_0.17.1_all.deb
gdebi -n python3-xkit_0.5.0ubuntu2_all.deb
gdebi -n screen-resolution-extra_0.17.1_all.deb
wget ${WGET_OPTIONS} http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1504/x86_64/cuda-repo-ubuntu1504_7.5-18_amd64.deb apt-get install nvidia-drivers nvidia-modprobe libnvblas6.0 -y
gdebi -n cuda-repo-ubuntu1504_7.5-18_amd64.deb
rm cuda-repo-ubuntu1504_7.5-18_amd64.deb
apt-get update nvidia-modprobe
apt-get install cuda
echo "NVBLAS_LOGFILE nvblas.log echo "#NVBLAS_LOGFILE nvblas.log
NVBLAS_CPU_BLAS_LIB /opt/blap-lib/netlib/libblas.so.3.0 NVBLAS_CPU_BLAS_LIB /opt/blap-lib/netlib/libblas.so.3.0
NVBLAS_GPU_LIST ALL0 NVBLAS_GPU_LIST ALL0
NVBLAS_TILE_DIM 2048 NVBLAS_TILE_DIM 2048
@ -416,10 +386,39 @@ function cublas_install {
apt-get clean apt-get clean
# run R: echo "Finished installing cuBLAS"
# NVBLAS_CONFIG_FILE=/opt/blap-lib/cublas/nvblas.conf LD_PRELOAD="/usr/local/cuda-7.5/targets/x86_64-linux/lib/libnvblas.so.7.5 /usr/local/cuda-7.5/targets/x86_64-linux/lib/libcublas.so.7.5" R }
echo "Finished installing cuBLAS." function cublas_test {
echo "Started checking cuBLAS"
NVBLAS_CONFIG_FILE=/opt/blap-lib/cublas/nvblas.conf LD_PRELOAD="/usr/lib/x86_64-linux-gnu/libnvblas.so.6.0 /usr/lib/x86_64-linux-gnu/libcublas.so.6.0" R -q
echo "Finished checking cuBLAS"
}
##############################################################
# clBLAS #
# - https://github.com/clMathLibraries/clBLAS #
# - BLAS #
# - OpenCL #
##############################################################
function clblas_install {
echo "Started installing clBLAS"
wget ${WGET_OPTIONS} https://github.com/clMathLibraries/clBLAS/archive/v2.10.tar.gz -O clBLAS-2.10.tar.gz
tar -xvzf clBLAS-2.10.tar.gz
rm clBLAS-2.10.tar.gz
#cd clBLAS-2.10
#
#cd ..
echo "TODO!"
echo "Finished installing clBLAS"
} }
############################################################## ##############################################################
@ -431,11 +430,11 @@ function cublas_install {
function magma_install { function magma_install {
echo "Started installing MAGMA." echo "Started installing MAGMA"
echo "TODO!" echo "TODO!"
echo "Finished installing MAGMA." echo "Finished installing MAGMA"
} }
############################################################## ##############################################################
@ -447,11 +446,11 @@ function magma_install {
function cula_install { function cula_install {
echo "Started installing CULA." echo "Started installing CULA"
echo "TODO!" echo "TODO!"
echo "Finished installing CULA." echo "Finished installing CULA"
} }