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fixed checkpoint;

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fixed paths to blis and clblas;
added draft for cublas
This commit is contained in:
Andrzej Wójtowicz 2016-05-01 01:31:19 +02:00
parent c0b44f561f
commit 4ccadeaded
2 changed files with 37 additions and 8 deletions
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43
install-env.sh
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@ -26,6 +26,9 @@ rm MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
# make symbolic link to R libraries dir
ln -s /usr/lib64/MRO-${MRO_VERSION}/R-${MRO_VERSION}/lib/R/lib/ /opt/MRO-lib
# make directory for R checkpoint
mkdir ~/.checkpoint
# make directory for BLAS and LAPACK libraries
mkdir -p /opt/blap-lib/
@ -172,16 +175,18 @@ mv RevoMath /opt/blap-lib/mkl/
mkdir /opt/blap-lib/blis/
git clone https://github.com/flame/blis.git
cd blis
wget ${WGET_OPTIONS} https://github.com/flame/blis/archive/0.2.0.tar.gz -O blis-0.2.0.tar.gz
tar -xvzf blis-0.2.0.tar.gz
rm blis-0.2.0.tar.gz
cd blis-0.2.0
./configure --enable-shared auto
make -j `nproc`
cd ..
cp `find ./blis/ -name "libblis.so"` /opt/blap-lib/blis/
cp `find ./blis-0.2.0/ -name "libblis.so"` /opt/blap-lib/blis/
rm -r blis
rm -r blis-0.2.0
##############################################################
##############################################################
@ -196,7 +201,13 @@ rm -r blis
# - OpenCL #
##############################################################
git clone https://github.com/clMathLibraries/clBLAS.git
wget ${WGET_OPTIONS} https://github.com/clMathLibraries/clBLAS/archive/v2.10.tar.gz -O clBLAS-2.10.tar.gz
tar -xvzf clBLAS-2.10.tar.gz
rm clBLAS-2.10.tar.gz
#cd clBLAS-2.10
#
#cd ..
##############################################################
# cuBLAS (NVBLAS) #
@ -205,15 +216,31 @@ git clone https://github.com/clMathLibraries/clBLAS.git
# - CUDA #
##############################################################
# TODO: cuSOLVE (dense, LAPACK)?
mkdir /opt/blap-lib/cublas/
# Ubuntu dependencies
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/x/x-kit/python3-xkit_0.5.0ubuntu2_all.deb
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/s/screen-resolution-extra/screen-resolution-extra_0.17.1_all.deb
gdebi -n python3-xkit_0.5.0ubuntu2_all.deb
gdebi -n screen-resolution-extra_0.17.1_all.deb
wget ${WGET_OPTIONS} http://developer.download.nvidia.com/compute/cuda/7.5/Prod/local_installers/cuda-repo-ubuntu1504-7-5-local_7.5-18_amd64.deb
gdebi -n cuda-repo-ubuntu1504-7-5-local_7.5-18_amd64.deb
rm cuda-repo-ubuntu1504-7-5-local_7.5-18_amd64.deb
wget ${WGET_OPTIONS} http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1504/x86_64/cuda-repo-ubuntu1504_7.5-18_amd64.deb
gdebi -n cuda-repo-ubuntu1504_7.5-18_amd64.deb
rm cuda-repo-ubuntu1504_7.5-18_amd64.deb
apt-get update
apt-get install cuda
echo "NVBLAS_LOGFILE nvblas.log
NVBLAS_CPU_BLAS_LIB /opt/blap-lib/netlib/libblas.so.3.0
NVBLAS_GPU_LIST ALL0
NVBLAS_TILE_DIM 2048
NVBLAS_AUTOPIN_MEM_ENABLED" > /opt/blap-lib/cublas/nvblas.conf
# run R:
# NVBLAS_CONFIG_FILE=/opt/blap-lib/cublas/nvblas.conf LD_PRELOAD="/usr/local/cuda-7.5/targets/x86_64-linux/lib/libnvblas.so.7.5 /usr/local/cuda-7.5/targets/x86_64-linux/lib/libcublas.so.7.5" R
##############################################################
# MAGMA #

2
sample-benchmark.R
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@ -1,4 +1,6 @@
library(checkpoint)
checkpoint("2016-04-01")
library(rbenchmark)
f = function()