mirror of
https://github.com/andre-wojtowicz/blas-benchmarks
synced 2024-11-22 13:15:28 +01:00
markdown: added results per library; added table of contents
This commit is contained in:
parent
5ec7e7f9fa
commit
65ef08182f
244
results.Rmd
244
results.Rmd
@ -1,9 +1,12 @@
|
|||||||
---
|
---
|
||||||
title: "Results"
|
title: "BLAS libraries benchmarks"
|
||||||
author: "Andrzej Wójtowicz"
|
author: "Andrzej Wójtowicz"
|
||||||
output: html_document
|
output:
|
||||||
|
html_document:
|
||||||
|
keep_md: yes
|
||||||
---
|
---
|
||||||
|
|
||||||
|
Document generation date: `r Sys.time()`
|
||||||
|
|
||||||
```{r checkpoint, echo=FALSE, warning=FALSE, message=FALSE}
|
```{r checkpoint, echo=FALSE, warning=FALSE, message=FALSE}
|
||||||
library(checkpoint)
|
library(checkpoint)
|
||||||
@ -14,6 +17,50 @@ library(ggplot2)
|
|||||||
library(RColorBrewer)
|
library(RColorBrewer)
|
||||||
```
|
```
|
||||||
|
|
||||||
|
## Table of Contents
|
||||||
|
|
||||||
|
1. [Configuration](#configuration)
|
||||||
|
2. [Results per host](#results-per-host)
|
||||||
|
* [Intel Core i5-4590 + NVIDIA GeForce GT 430](#intel-core-i5-4590-nvidia-geforce-gt-430)
|
||||||
|
* [Intel Core i5-3570](#intel-core-i5-3570)
|
||||||
|
* [Intel Core i3-2120](#intel-core-i3-2120)
|
||||||
|
* [Intel Core i3-3120M](#intel-core-i3-3120m)
|
||||||
|
3. [Results per library](#results-per-library)
|
||||||
|
* [Netlib](#netlib)
|
||||||
|
* [Atlas (st)](#atlas-st)
|
||||||
|
* [OpenBLAS](#openblas)
|
||||||
|
* [Atlas (mt)](#atlas-mt)
|
||||||
|
* [GotoBLAS2](#gotoblas2)
|
||||||
|
* [MKL](#mkl)
|
||||||
|
* [BLIS](#blis)
|
||||||
|
|
||||||
|
***
|
||||||
|
|
||||||
|
## Configuration
|
||||||
|
|
||||||
|
**R software**: [Microsoft R Open](https://mran.microsoft.com/open/).
|
||||||
|
|
||||||
|
**Libraries**:
|
||||||
|
|
||||||
|
|CPU (single-threaded)|CPU (multi-threaded)|GPU|
|
||||||
|
|---|---|---|
|
||||||
|
|[Netlib](http://www.netlib.org/) (debian package)|[OpenBLAS](http://www.openblas.net/) (debian package)|[NVIDIA cuBLAS](https://developer.nvidia.com/cublas) (NVBLAS + Intel MKL)|
|
||||||
|
|[ATLAS](http://math-atlas.sourceforge.net/) (debian package)|[ATLAS](http://math-atlas.sourceforge.net/) (dev branch)| |
|
||||||
|
| |[GotoBLAS2](https://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/) (Survive fork)| |
|
||||||
|
| |[Intel MKL](https://mran.microsoft.com/download/) (part of Microsoft R Open)| |
|
||||||
|
| |[BLIS](https://github.com/flame/blis)| |
|
||||||
|
|
||||||
|
**Hosts**:
|
||||||
|
|
||||||
|
|No.|CPU|GPU|
|
||||||
|
|---|---|---|
|
||||||
|
|1.|[Intel Core i5-4590](http://ark.intel.com/products/80815/Intel-Core-i5-4590-Processor-6M-Cache-up-to-3_70-GHz)|[NVIDIA GeForce GT 430](http://www.geforce.com/hardware/desktop-gpus/geforce-gt-430/specifications)|
|
||||||
|
|2.|[Intel Core i5-3570](http://ark.intel.com/products/65702/Intel-Core-i5-3570-Processor-6M-Cache-up-to-3_80-GHz)| - |
|
||||||
|
|3.|[Intel Core i3-2120](http://ark.intel.com/products/53426/Intel-Core-i3-2120-Processor-3M-Cache-3_30-GHz)| - |
|
||||||
|
|4.|[Intel Core i3-3120M](http://ark.intel.com/products/71465/Intel-Core-i3-3120M-Processor-3M-Cache-2_50-GHz)| - |
|
||||||
|
|
||||||
|
**Benchmarks**: [Urbanek](http://r.research.att.com/benchmarks/R-benchmark-25.R), [Revolution](https://gist.github.com/andrie/24c9672f1ea39af89c66#file-rro-mkl-benchmark-r), [Gcbd](https://cran.r-project.org/web/packages/gcbd/vignettes/gcbd.pdf).
|
||||||
|
|
||||||
```{r config, echo=FALSE}
|
```{r config, echo=FALSE}
|
||||||
|
|
||||||
HOSTNAMES = suppressWarnings(readLines("hosts-list.txt"))
|
HOSTNAMES = suppressWarnings(readLines("hosts-list.txt"))
|
||||||
@ -32,6 +79,8 @@ LIBRARIES = c("netlib",
|
|||||||
"cublas")
|
"cublas")
|
||||||
|
|
||||||
LIBRARY.REF = "netlib"
|
LIBRARY.REF = "netlib"
|
||||||
|
HOST.REF = "Intel Core i3-3120M"
|
||||||
|
HOST.REF.GPU = "NVIDIA GeForce GT 430"
|
||||||
|
|
||||||
HOST.INFO.PATTERN = "host-info-<HOST>.log"
|
HOST.INFO.PATTERN = "host-info-<HOST>.log"
|
||||||
BENCHMKAR.PATTERN = "test-<BENCHMARK>-<HOST>-<LIBRARY>.rds"
|
BENCHMKAR.PATTERN = "test-<BENCHMARK>-<HOST>-<LIBRARY>.rds"
|
||||||
@ -132,7 +181,7 @@ saveRDS(benchmark.results, file.path(DATA.DIR, "benchmark.results.rds"))
|
|||||||
|
|
||||||
```{r per-host, echo=FALSE, results='asis'}
|
```{r per-host, echo=FALSE, results='asis'}
|
||||||
|
|
||||||
cat("# Per host\n\n")
|
cat("# Results per host\n\n")
|
||||||
|
|
||||||
for (host in hosts.info$Host)
|
for (host in hosts.info$Host)
|
||||||
{
|
{
|
||||||
@ -148,7 +197,7 @@ for (host in hosts.info$Host)
|
|||||||
|
|
||||||
for (benchmark in BENCHMARKS)
|
for (benchmark in BENCHMARKS)
|
||||||
{
|
{
|
||||||
cat(paste0("## ", paste(toupper(substring(benchmark, 1,1)), substring(benchmark, 2),sep="", collapse=" "), " benchmark\n\n"))
|
cat(paste0("### ", paste(toupper(substring(benchmark, 1,1)), substring(benchmark, 2),sep="", collapse=" "), " benchmark\n\n"))
|
||||||
|
|
||||||
testnames = benchmark.results %>%
|
testnames = benchmark.results %>%
|
||||||
filter(Benchmark == benchmark) %>%
|
filter(Benchmark == benchmark) %>%
|
||||||
@ -210,9 +259,6 @@ for (host in hosts.info$Host)
|
|||||||
names(myColors) = levels(data.to.plot$Color)
|
names(myColors) = levels(data.to.plot$Color)
|
||||||
colScale = scale_fill_manual(name = "Color", values = myColors)
|
colScale = scale_fill_manual(name = "Color", values = myColors)
|
||||||
|
|
||||||
#if (benchmark=="gcbd")
|
|
||||||
# browser()
|
|
||||||
|
|
||||||
if (benchmark != "gcbd")
|
if (benchmark != "gcbd")
|
||||||
{
|
{
|
||||||
png(image.path, width=600, height=35*nrow(data.to.plot))
|
png(image.path, width=600, height=35*nrow(data.to.plot))
|
||||||
@ -320,3 +366,187 @@ for (host in hosts.info$Host)
|
|||||||
}
|
}
|
||||||
|
|
||||||
```
|
```
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
```{r per-library, echo=FALSE, results='asis'}
|
||||||
|
|
||||||
|
cat("# Results per library\n\n")
|
||||||
|
|
||||||
|
renamedLibs = list(
|
||||||
|
"cublas"="cuBLAS",
|
||||||
|
"blis"="BLIS",
|
||||||
|
"mkl"="MKL",
|
||||||
|
"atlas_mt"="ATLAS (mt)",
|
||||||
|
"openblas"="OpenBLAS",
|
||||||
|
"gotoblas2"="GotoBLAS2",
|
||||||
|
"atlas_st"="ATLAS (st)",
|
||||||
|
"netlib"="Netlib")
|
||||||
|
|
||||||
|
for (lib in LIBRARIES)
|
||||||
|
{
|
||||||
|
cat(paste("##", renamedLibs[[lib]]))
|
||||||
|
|
||||||
|
cat("\n\n\n\n")
|
||||||
|
|
||||||
|
for (benchmark in BENCHMARKS)
|
||||||
|
{
|
||||||
|
cat(paste0("### ", paste(toupper(substring(benchmark, 1,1)), substring(benchmark, 2),sep="", collapse=" "), " benchmark\n\n"))
|
||||||
|
|
||||||
|
testnames = benchmark.results %>%
|
||||||
|
filter(Benchmark == benchmark) %>%
|
||||||
|
select(Test) %>%
|
||||||
|
unique
|
||||||
|
|
||||||
|
if (benchmark == "urbanek")
|
||||||
|
# remove tests with almost the same results
|
||||||
|
testnames = testnames %>% filter(row_number() %in% c(4, 5, 7, 8, 9, 10, 15))
|
||||||
|
|
||||||
|
|
||||||
|
for (i in 1:nrow(testnames))
|
||||||
|
{
|
||||||
|
test = as.character(testnames[i, "Test"])
|
||||||
|
|
||||||
|
data.to.plot = benchmark.results %>%
|
||||||
|
filter(Library == lib & Benchmark == benchmark &
|
||||||
|
Test == test)
|
||||||
|
|
||||||
|
if (benchmark != "gcbd")
|
||||||
|
{
|
||||||
|
if (lib!="cublas")
|
||||||
|
data.to.plot = data.to.plot %>%
|
||||||
|
mutate(PerfGain=data.to.plot[which(hosts.info$CPU==HOST.REF), "Time"]/Time)
|
||||||
|
else
|
||||||
|
data.to.plot = data.to.plot %>%
|
||||||
|
mutate(PerfGain=data.to.plot[which(hosts.info$GPU==HOST.REF.GPU), "Time"]/Time)
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
data.to.plot = data.to.plot %>% rowwise() %>%
|
||||||
|
mutate(CPUGPU=hosts.info[which(hosts.info$Host==Host), ifelse(lib!="cublas", "CPU", "GPU")])
|
||||||
|
|
||||||
|
image.path = file.path(IMAGES.DIR,
|
||||||
|
paste0("img_pl",
|
||||||
|
"_l", which(lib == LIBRARIES),
|
||||||
|
"_b", which(benchmark == BENCHMARKS),
|
||||||
|
"_t", i,
|
||||||
|
".png"))
|
||||||
|
|
||||||
|
cat(paste0("#### ", gsub(" \\(.*\\)", "", test)), "\n\n")
|
||||||
|
cat(paste0("Time in seconds ", ifelse(benchmark=="gcbd", "regarding matrix size - right panel on log scale", ""), " - ", ifelse(benchmark!="gcbd", data.to.plot$Runs[1], paste(" from ", max(data.to.plot$Runs), " to ", min(data.to.plot$Runs))),
|
||||||
|
" runs - lower is better\n\n"))
|
||||||
|
|
||||||
|
|
||||||
|
myColors = c("#5AAC45", "#636363", "#636363", "#E6191A")
|
||||||
|
colScale = scale_fill_manual(name = "Color", values = myColors)
|
||||||
|
|
||||||
|
if (benchmark != "gcbd")
|
||||||
|
{
|
||||||
|
png(image.path, width=600, height=50*nrow(data.to.plot)+ifelse(nrow(data.to.plot)>1, 0, 20))
|
||||||
|
print(ggplot(data.to.plot, aes(x=reorder(CPUGPU, -Time), y=Time,
|
||||||
|
fill=CPUGPU)) +
|
||||||
|
theme_classic() +
|
||||||
|
theme(
|
||||||
|
panel.border = element_blank(),
|
||||||
|
axis.title.x=element_blank(),
|
||||||
|
axis.title.y=element_blank(),
|
||||||
|
axis.text.x = element_text(colour="grey60"),
|
||||||
|
axis.ticks.x=element_line(color="grey60"),
|
||||||
|
axis.ticks.y=element_line(color="grey60"),
|
||||||
|
legend.position="none"
|
||||||
|
) +
|
||||||
|
scale_y_continuous(expand = c(0, 0),
|
||||||
|
limits = c(0, 1.20*max(data.to.plot$Time))) +
|
||||||
|
geom_bar(stat="identity", width=.7) +
|
||||||
|
coord_flip() +
|
||||||
|
geom_text(aes(y=Time, x=CPUGPU, label=format(Time, digits=2, nsmall=2)), hjust=-0.25, size=3, colour="grey45") +
|
||||||
|
geom_text(aes(y=1.2*max(data.to.plot$Time), x=CPUGPU, label=paste0("x", trimws(format(PerfGain, digits=1, nsmall=1)))), hjust=1, size=4) +
|
||||||
|
geom_hline(yintercept = 0, color="grey") +
|
||||||
|
geom_vline(xintercept = 0.4, color="grey") +
|
||||||
|
annotate("text", x=nrow(data.to.plot)+ifelse(nrow(data.to.plot)>1, 0.55, 0.45), y=1.2*max(data.to.plot$Time), label="Performance gain", hjust=1) +
|
||||||
|
colScale
|
||||||
|
)
|
||||||
|
dev.off()
|
||||||
|
|
||||||
|
cat(paste0("![](", image.path, ")\n\n\n\n"))
|
||||||
|
|
||||||
|
} else {
|
||||||
|
|
||||||
|
rbColors = c("#F40000","#FF8000","#0094FF","#7F00FF","#FFBC70","#00DD0E")
|
||||||
|
|
||||||
|
png(image.path, width=400, height=350, type="cairo")
|
||||||
|
print(ggplot(data.to.plot,
|
||||||
|
aes(x=Size, y=Time, group=CPUGPU, color=CPUGPU,
|
||||||
|
shape=CPUGPU, fill=CPUGPU)) +
|
||||||
|
theme_classic() +
|
||||||
|
theme(
|
||||||
|
panel.border = element_blank(),
|
||||||
|
axis.title.x=element_blank(),
|
||||||
|
axis.title.y=element_blank(),
|
||||||
|
axis.text.x = element_text(colour="grey60"),
|
||||||
|
axis.text.y = element_text(colour="grey60"),
|
||||||
|
axis.ticks.x=element_line(color="grey60"),
|
||||||
|
axis.ticks.y=element_line(color="grey60"),
|
||||||
|
legend.margin=unit(c(-13,8), "mm"),
|
||||||
|
legend.title=element_blank()
|
||||||
|
) +
|
||||||
|
geom_line(size=1) +
|
||||||
|
geom_point(size=2, color="grey30") +
|
||||||
|
scale_x_continuous(expand = c(0, 0),
|
||||||
|
limits = c(0, 5000)) +
|
||||||
|
scale_y_continuous(expand = c(0, 0)) +
|
||||||
|
geom_hline(yintercept = 0, color="grey") +
|
||||||
|
geom_vline(xintercept = 0.4, color="grey") +
|
||||||
|
scale_shape_manual(values=c(25,24,22,21)) +
|
||||||
|
scale_color_manual(values=rbColors) +
|
||||||
|
scale_fill_manual(values=rbColors)
|
||||||
|
|
||||||
|
)
|
||||||
|
dev.off()
|
||||||
|
|
||||||
|
cat(paste0("![](", image.path, ")"))
|
||||||
|
|
||||||
|
png(gsub(".png", "b.png", image.path), width=350, height=350, type="cairo")
|
||||||
|
print(ggplot(data.to.plot,
|
||||||
|
aes(x=Size, y=Time, group=CPUGPU, color=CPUGPU,
|
||||||
|
shape=CPUGPU, fill=CPUGPU)) +
|
||||||
|
theme_classic() +
|
||||||
|
theme(
|
||||||
|
panel.border = element_blank(),
|
||||||
|
axis.title.x=element_blank(),
|
||||||
|
axis.title.y=element_blank(),
|
||||||
|
axis.text.x = element_text(colour="grey60"),
|
||||||
|
axis.text.y = element_text(colour="grey60"),
|
||||||
|
axis.ticks.x=element_line(color="grey60"),
|
||||||
|
axis.ticks.y=element_line(color="grey60"),
|
||||||
|
legend.position="none"
|
||||||
|
) +
|
||||||
|
geom_line(size=1) +
|
||||||
|
geom_point(size=2, color="grey30") +
|
||||||
|
scale_x_log10(expand=c(0,0),
|
||||||
|
breaks=c(100, 200, 400, 800, 1600, 3200, 5000),
|
||||||
|
limits=c(100, 5500)) +
|
||||||
|
scale_y_log10() +
|
||||||
|
scale_shape_manual(values=c(25,24,22,21)) +
|
||||||
|
geom_hline(yintercept = 0, color="grey") +
|
||||||
|
geom_vline(xintercept = min(data.to.plot$Size), color="grey") +
|
||||||
|
scale_color_manual(values=rbColors) +
|
||||||
|
scale_fill_manual(values=rbColors)
|
||||||
|
|
||||||
|
)
|
||||||
|
dev.off()
|
||||||
|
|
||||||
|
cat(paste0("![](", gsub(".png", "b.png", image.path), ")\n\n\n\n"))
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
```
|
||||||
|
|
||||||
|
|||||||
Loading…
Reference in New Issue
Block a user