From a7dadec6d33ebad0d716caa5c58d6818a288a28a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andrzej=20W=C3=B3jtowicz?= <andre@amu.edu.pl>
Date: Thu, 28 Apr 2016 13:48:11 +0200
Subject: [PATCH] init install-env

---
 install-env.sh | 42 ++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 42 insertions(+)
 create mode 100644 install-env.sh

diff --git a/install-env.sh b/install-env.sh
new file mode 100644
index 0000000..ff7814b
--- /dev/null
+++ b/install-env.sh
@@ -0,0 +1,42 @@
+#!/bin/bash
+
+WGET_OPTIONS="--no-check-certificate"
+MRO_VERSION="3.2.4"
+
+# update debian repos & upgrade packages
+sed -i -e 's/ftp.debian.org/ftp.pl.debian.org/ig' /etc/apt/sources.list
+sed -i -e 's/wheezy/jessie/ig' /etc/apt/sources.list
+
+apt-get update
+DEBIAN_FRONTEND=noninteractive apt-get -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confnew" upgrade
+
+# install new packages for R
+apt-get -y install build-essential gfortran ed htop libxml2-dev ca-certificates curl libcurl4-openssl-dev gdebi-core sshpass
+
+# hack with Microsoft R Open deps
+wget ${WGET_OPTIONS} http://ftp.pl.debian.org/debian/pool/main/libj/libjpeg8/libjpeg8_8d1-2_amd64.deb
+gdebi -n libjpeg8_8d1-2_amd64.deb
+rm libjpeg8_8d1-2_amd64.deb
+
+# install Microsoft R Open
+wget ${WGET_OPTIONS} https://mran.microsoft.com/install/mro/${MRO_VERSION}/MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
+gdebi -n MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
+rm MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
+
+# update R repository url
+sed -i -e 's/mran.revolutionanalytics.com/mran.microsoft.com/ig' /usr/lib64/MRO-${MRO_VERSION}/R-${MRO_VERSION}/lib/R/etc/Rprofile.site
+
+# update  R reposritory snapshot day
+sed -i -e 's/2016-01-01/2016-04-10/ig' /usr/lib64/MRO-${MRO_VERSION}/R-${MRO_VERSION}/lib/R/etc/Rprofile.site
+
+# install RevoMathUtils
+wget ${WGET_OPTIONS} https://mran.microsoft.com/install/mro/${MRO_VERSION}/RevoMath-${MRO_VERSION}.tar.gz
+tar -xvzf RevoMath-${MRO_VERSION}.tar.gz
+
+cd RevoMath
+sed -i '16,18d' RevoMath.sh
+
+echo 1 | ./RevoMath.sh
+
+cd ..
+rm -r RevoMath*