added saving host info;
added saving results in rds files; renamed benchmark scripts
This commit is contained in:
parent
d1f13a3a06
commit
eb01728fb6
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@ -19,3 +19,4 @@ vignettes/*.pdf
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cpuinfo
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hosts-list.txt
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ssh/rsa.key
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*.rds
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@ -0,0 +1,75 @@
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# source: https://gist.github.com/andrie/24c9672f1ea39af89c66#file-rro-mkl-benchmark-r
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runs = 10
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results = data.frame(name=character(), time=numeric())
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cat(c("Runs :", runs, "\n"))
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# Initialization
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set.seed (1)
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m <- 10000
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n <- 5000
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A <- matrix (runif (m*n),m,n)
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cat("Matrix Multiply : ")
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cumulate = 0
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for (i in 1:runs)
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cumulate = cumulate + as.numeric(system.time (B <- crossprod(A))[3])
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results = rbind(results, data.frame(name="Matrix Multiply",
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time=cumulate/runs))
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cat(c(cumulate/runs, "\n"))
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cat("Cholesky Factorization : ")
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cumulate = 0
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for (i in 1:runs)
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cumulate = cumulate + as.numeric(system.time (C <- chol(B))[3])
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results = rbind(results, data.frame(name="Cholesky Factorization",
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time=cumulate/runs))
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cat(c(cumulate/runs, "\n"))
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cat("Singular Value Deomposition : ")
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m <- 10000
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n <- 2000
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A <- matrix (runif (m*n),m,n)
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cumulate = 0
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for (i in 1:runs)
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cumulate = cumulate + as.numeric(system.time (S <- svd (A,nu=0,nv=0))[3])
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results = rbind(results, data.frame(name="Singular Value Deomposition",
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time=cumulate/runs))
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cat(c(cumulate/runs, "\n"))
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cat("Principal Components Analysis : ")
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m <- 10000
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n <- 2000
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A <- matrix (runif (m*n),m,n)
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cumulate = 0
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for (i in 1:runs)
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cumulate = cumulate + as.numeric(system.time (P <- prcomp(A))[3])
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results = rbind(results, data.frame(name="Principal Components Analysis",
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time=cumulate/runs))
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cat(c(cumulate/runs, "\n"))
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cat("Linear Discriminant Analysis : ")
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library('MASS')
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g <- 5
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k <- round (m/2)
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A <- data.frame (A, fac=sample (LETTERS[1:g],m,replace=TRUE))
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train <- sample(1:m, k)
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cumulate = 0
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for (i in 1:runs)
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cumulate = cumulate + as.numeric(system.time (L <- lda(fac ~., data=A, prior=rep(1,g)/g, subset=train))[3])
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results = rbind(results, data.frame(name="Linear Discriminant Analysis",
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time=cumulate/runs))
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cat(c(cumulate/runs, "\n"))
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attr(results, "runs") = runs
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saveRDS(results, paste0("test-revolution-", ifelse(exists("blasLibName"), blasLibName, ""), ".rds"))
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@ -1,7 +1,6 @@
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# source: http://r.research.att.com/benchmarks/R-benchmark-25.R
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library(methods) # for Rscript
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# R Benchmark 2.5.1 (05/2016)
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# R Benchmark 2.5 (06/2008) [Simon Urbanek]
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# version 2.5: scaled to get roughly 1s per test, R 2.7.0 @ 2.6GHz Mac Pro
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# R Benchmark 2.4 (06/2008) [Simon Urbanek]
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@ -27,14 +26,18 @@ library(methods) # for Rscript
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# by Stephan Steinhaus (stst@informatik.uni-frankfurt.de)
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# Reference for Escoufier's equivalents vectors (test III.5):
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# Escoufier Y., 1970. Echantillonnage dans une population de variables
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# aleatoires réelles. Publ. Inst. Statis. Univ. Paris 19 Fasc 4, 1-47.
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# aleatoires r?elles. Publ. Inst. Statis. Univ. Paris 19 Fasc 4, 1-47.
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#
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# type source("c:/<dir>/R2.R") to start the test
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runs <- 3 # Number of times the tests are executed
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library(methods) # for Rscript
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set.seed(1)
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results = data.frame(name=character(), time=numeric())
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runs <- 10 # Number of times the tests are executed
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times <- rep(0, 15); dim(times) <- c(5,3)
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require(Matrix) # Optimized matrix operations
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require(SuppDists) # Optimized random number generators
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library(Matrix) # Optimized matrix operations
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library(SuppDists) # Optimized random number generators
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#Runif <- rMWC1019 # The fast uniform number generator
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Runif <- runif
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# If you don't have SuppDists, you can use: Runif <- runif
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@ -43,10 +46,10 @@ Runif <- runif
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# If you don't have SuppDists, you can use: Rnorm <- rnorm
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#b <- rziggurat(10, new.start=TRUE) # Init. the generator
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Rnorm <- rnorm
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remove("a", "b")
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options(object.size=100000000)
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cat("\n\n R Benchmark 2.5\n")
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cat("\n\n R Benchmark 2.5.1\n")
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cat(" ===============\n")
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cat(c("Number of times each test is run__________________________: ", runs))
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cat("\n\n")
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@ -71,6 +74,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[1, 1] <- timing
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cat(c("Creation, transp., deformation of a 2500x2500 matrix (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Creation, transp., deformation of a 2500x2500 matrix", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -87,6 +91,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[2, 1] <- timing
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cat(c("2400x2400 normal distributed random matrix ^1000____ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="2400x2400 normal distributed random matrix ^1000", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -104,6 +109,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[3, 1] <- timing
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cat(c("Sorting of 7,000,000 random values__________________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Sorting of 7,000,000 random values", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -120,6 +126,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[4, 1] <- timing
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cat(c("2800x2800 cross-product matrix (b = a' * a)_________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="2800x2800 cross-product matrix (b = a' * a)", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -148,6 +155,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[5, 1] <- timing
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cat(c("Linear regr. over a 3000x3000 matrix (c = a \\ b')___ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Linear regr. over a 3000x3000 matrix (c = a \ b')", time=as.numeric(timing)))
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remove("a", "b", "c", "qra")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -172,6 +180,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[1, 2] <- timing
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cat(c("FFT over 2,400,000 random values____________________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="FFT over 2,400,000 random value", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -193,6 +202,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[2, 2] <- timing
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cat(c("Eigenvalues of a 640x640 random matrix______________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Eigenvalues of a 640x640 random matrix", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -213,6 +223,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[3, 2] <- timing
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cat(c("Determinant of a 2500x2500 random matrix____________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Determinant of a 2500x2500 random matrix", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -232,6 +243,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[4, 2] <- timing
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cat(c("Cholesky decomposition of a 3000x3000 matrix________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Cholesky decomposition of a 3000x3000 matrix", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -251,6 +263,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[5, 2] <- timing
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cat(c("Inverse of a 1600x1600 random matrix________________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Inverse of a 1600x1600 random matrix", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -275,6 +288,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[1, 3] <- timing
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cat(c("3,500,000 Fibonacci numbers calculation (vector calc)(sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="3,500,000 Fibonacci numbers calculation (vector calc)", time=as.numeric(timing)))
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remove("a", "b", "phi")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -293,6 +307,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[2, 3] <- timing
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cat(c("Creation of a 3000x3000 Hilbert matrix (matrix calc) (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Creation of a 3000x3000 Hilbert matrix (matrix calc)", time=as.numeric(timing)))
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remove("a", "b")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -311,6 +326,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[3, 3] <- timing
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cat(c("Grand common divisors of 400,000 pairs (recursion)__ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Grand common divisors of 400,000 pairs (recursion)", time=as.numeric(timing)))
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remove("a", "b", "c", "gcd2")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -333,6 +349,7 @@ for (i in 1:runs) {
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timing <- cumulate/runs
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times[4, 3] <- timing
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cat(c("Creation of a 500x500 Toeplitz matrix (loops)_______ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Creation of a 500x500 Toeplitz matrix (loops)", time=as.numeric(timing)))
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remove("b", "j", "k")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -375,6 +392,7 @@ for (i in 1:runs) {
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}
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times[5, 3] <- timing
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cat(c("Escoufier's method on a 45x45 matrix (mixed)________ (sec): ", timing, "\n"))
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results = rbind(results, data.frame(name="Escoufier's method on a 45x45 matrix (mixed)", time=as.numeric(timing)))
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remove("x", "p", "vt", "vr", "vrt", "rvt", "RV", "j", "k")
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remove("x2", "R", "Rxx", "Ryy", "Rxy", "Ryx", "Rvmax", "Trace")
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if (R.Version()$os == "Win32" || R.Version()$os == "mingw32") flush.console()
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@ -385,5 +403,9 @@ cat(c(" Trimmed geom. mean (2 extremes eliminated): ", exp(mean(l
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cat(c("Total time for all 15 tests_________________________ (sec): ", sum(times), "\n"))
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cat(c("Overall mean (sum of I, II and III trimmed means/3)_ (sec): ", exp(mean(log(times[2:4, ]))), "\n"))
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attr(results, "runs") = runs
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saveRDS(results, paste0("test-urbanek-", ifelse(exists("blasLibName"), blasLibName, ""), ".rds"))
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remove("cumulate", "timing", "times", "runs", "i")
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cat(" --- End of test ---\n\n")
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@ -13,7 +13,7 @@ function configure_hosts {
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echo -n "${host} ... "
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echo -n "config-push "
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} slave-cmds.sh cpuinfo sample-benchmark.R R-benchmark-25.R revolution-benchmark.R root@${host}:/root
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} slave-cmds.sh cpuinfo benchmark-sample.R benchmark-urbanek.R benchmark-revolution.R root@${host}:/root
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ret=$?
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if [ $ret -ne 0 ] ; then
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echo "error $ret"; continue
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@ -29,6 +29,7 @@ function configure_hosts {
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echo "config-run "
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{ ssh ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host} 'bash slave-cmds.sh mro_install netlib_install atlas_st_install openblas_install atlas_mt_install gotoblas2_install mkl_install blis_install cublas_install > install.log 2>&1' ;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/install.log install-${host}.log;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/host-info.log host-info-${host}.log;
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echo "${host} finished" ; } &
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done
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@ -59,6 +60,15 @@ function benchmark {
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echo "benchmark-run "
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{ ssh ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host} "bash slave-cmds.sh test_${BENCHMARK_TEST} netlib_check atlas_st_check openblas_check atlas_mt_check gotoblas2_check mkl_check blis_check cublas_check > test-${BENCHMARK_TEST}.log 2>&1" ;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}.log test-${BENCHMARK_TEST}-${host}.log;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-netlib.rds test-${BENCHMARK_TEST}-${host}-netlib.rds;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-atlas_st.rds test-${BENCHMARK_TEST}-${host}-atlas_st.rds;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-openblas.rds test-${BENCHMARK_TEST}-${host}-openblas.rds;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-atlas_mt.rds test-${BENCHMARK_TEST}-${host}-atlas_mt.rds;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-gotoblas2.rds test-${BENCHMARK_TEST}-${host}-gotoblas2.rds;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-mkl.rds test-${BENCHMARK_TEST}-${host}-mkl.rds;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-blis.rds test-${BENCHMARK_TEST}-${host}-blis.rds;
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scp ${SSH_OPTIONS} -i ssh/${SSH_KEY_PRIV} root@${host}:/root/test-${BENCHMARK_TEST}-cublas.rds test-${BENCHMARK_TEST}-${host}-cublas.rds 2> /dev/null;
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echo "${host} finished" ; } &
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done
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@ -1,34 +0,0 @@
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# source: https://gist.github.com/andrie/24c9672f1ea39af89c66#file-rro-mkl-benchmark-r
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# Initialization
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set.seed (1)
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m <- 10000
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n <- 5000
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A <- matrix (runif (m*n),m,n)
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# Matrix multiply
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system.time (B <- crossprod(A))
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# Cholesky Factorization
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system.time (C <- chol(B))
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# Singular Value Deomposition
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m <- 10000
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n <- 2000
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A <- matrix (runif (m*n),m,n)
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system.time (S <- svd (A,nu=0,nv=0))
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# Principal Components Analysis
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m <- 10000
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n <- 2000
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A <- matrix (runif (m*n),m,n)
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system.time (P <- prcomp(A))
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# Linear Discriminant Analysis
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library('MASS')
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g <- 5
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k <- round (m/2)
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A <- data.frame (A, fac=sample (LETTERS[1:g],m,replace=TRUE))
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train <- sample(1:m, k)
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system.time (L <- lda(fac ~., data=A, prior=rep(1,g)/g, subset=train))
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@ -3,7 +3,7 @@
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WGET_OPTIONS="--no-check-certificate"
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MRO_VERSION="3.2.4"
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CHECKPOINT_DATE="2016-04-01"
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R_BENCHMARK_SCRIPT="sample-benchmark.R"
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R_BENCHMARK_SCRIPT="benchmark-sample.R"
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DIR_BLAS="/opt/blas-libs"
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if [ ! -f ./cpuinfo ]; then
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@ -20,6 +20,11 @@ function mro_install {
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|
||||
echo "Started installing Microsoft R Open and dependencies"
|
||||
|
||||
# save host info
|
||||
./cpuinfo -g | grep -oP 'Processor name( +):( +)\K(.+)' > host-info.log
|
||||
cat /proc/meminfo | grep -oP 'MemTotal:( +)\K(\d+)' >> host-info.log
|
||||
lspci -nn | grep -oP "VGA.*\KNVIDIA.*?]" >> host-info.log
|
||||
|
||||
# update debian repos & upgrade packages
|
||||
echo "deb http://snapshot.debian.org/archive/debian/20160411T102554Z/ jessie-backports main" >> /etc/apt/sources.list
|
||||
apt-get -o Acquire::Check-Valid-Until=false update
|
||||
|
|
@ -47,9 +52,9 @@ function mro_install {
|
|||
# prepare R checkpoint
|
||||
mkdir ~/.checkpoint
|
||||
Rscript -e "library(checkpoint); checkpoint('${CHECKPOINT_DATE}')"
|
||||
sed -i "1i\library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE)" sample-benchmark.R
|
||||
sed -i "1i\library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE)" revolution-benchmark.R
|
||||
sed -i "1i\library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE)" R-benchmark-25.R
|
||||
sed -i "1i\library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE)" benchmark-sample.R
|
||||
sed -i "1i\library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE)" benchmark-urbanek.R
|
||||
sed -i "1i\library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE)" benchmark-revolution.R
|
||||
|
||||
# make directory for BLAS and LAPACK libraries
|
||||
mkdir -p ${DIR_BLAS}
|
||||
|
|
@ -107,9 +112,9 @@ function netlib_remove {
|
|||
|
||||
function netlib_check {
|
||||
|
||||
echo "Started checking netlib."
|
||||
echo "Started checking netlib"
|
||||
|
||||
LD_PRELOAD="${DIR_NETLIB}/libblas.so.3.0 ${DIR_NETLIB}/liblapack.so.3.0" Rscript ${R_BENCHMARK_SCRIPT}
|
||||
LD_PRELOAD="${DIR_NETLIB}/libblas.so.3.0 ${DIR_NETLIB}/liblapack.so.3.0" Rscript -e "blasLibName='netlib'; source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
echo "Finished checking netlib"
|
||||
}
|
||||
|
|
@ -149,7 +154,7 @@ function atlas_st_check {
|
|||
|
||||
echo "Started checking ATLAS (single-threaded)"
|
||||
|
||||
LD_PRELOAD="${DIR_ATLAS_ST}/libatlas.so.3 ${DIR_ATLAS_ST}/libblas.so.3 ${DIR_ATLAS_ST}/liblapack.so.3" Rscript ${R_BENCHMARK_SCRIPT}
|
||||
LD_PRELOAD="${DIR_ATLAS_ST}/libatlas.so.3 ${DIR_ATLAS_ST}/libblas.so.3 ${DIR_ATLAS_ST}/liblapack.so.3" Rscript -e "blasLibName='atlas_st'; source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
echo "Finished checking ATLAS (single-threaded)"
|
||||
}
|
||||
|
|
@ -198,7 +203,7 @@ function openblas_check {
|
|||
|
||||
echo "Started checking OpenBLAS"
|
||||
|
||||
LD_PRELOAD="${DIR_OPENBLAS}/libopenblas.so.0 ${DIR_OPENBLAS}/libblas.so.3 ${DIR_OPENBLAS}/liblapack.so.3" Rscript ${R_BENCHMARK_SCRIPT}
|
||||
LD_PRELOAD="${DIR_OPENBLAS}/libopenblas.so.0 ${DIR_OPENBLAS}/libblas.so.3 ${DIR_OPENBLAS}/liblapack.so.3" Rscript -e "blasLibName='openblas'; source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
echo "Finished checking OpenBLAS"
|
||||
}
|
||||
|
|
@ -257,7 +262,7 @@ function atlas_mt_check {
|
|||
|
||||
echo "Started checking ATLAS (multi-threaded)"
|
||||
|
||||
LD_PRELOAD="${DIR_ATLAS_MT}/libtatlas.so" Rscript ${R_BENCHMARK_SCRIPT}
|
||||
LD_PRELOAD="${DIR_ATLAS_MT}/libtatlas.so" Rscript -e "blasLibName='atlas_mt'; source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
echo "Finished checking ATLAS (multi-threaded)"
|
||||
}
|
||||
|
|
@ -313,13 +318,11 @@ function gotoblas2_check {
|
|||
|
||||
echo "${DIR_GOTOBLAS2}" > /etc/ld.so.conf.d/gotoblas2.conf
|
||||
ldconfig
|
||||
sed "2i\library(RhpcBLASctl); blas_set_num_threads(${NPROC})" ${R_BENCHMARK_SCRIPT} > benchmark-gotoblas2.R
|
||||
|
||||
LD_PRELOAD="${DIR_GOTOBLAS2}/libgoto2blas.so ${DIR_GOTOBLAS2}/libgoto2lapack.so" GOTO_NUM_THREADS=${NPROC} Rscript benchmark-gotoblas2.R
|
||||
LD_PRELOAD="${DIR_GOTOBLAS2}/libgoto2blas.so ${DIR_GOTOBLAS2}/libgoto2lapack.so" GOTO_NUM_THREADS=${NPROC} Rscript -e "blasLibName='gotoblas2'; library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE); library(RhpcBLASctl); blas_set_num_threads(${NPROC}); source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
rm /etc/ld.so.conf.d/gotoblas2.conf
|
||||
ldconfig
|
||||
rm benchmark-gotoblas2.R
|
||||
|
||||
echo "Finished checking GotoBLAS2"
|
||||
}
|
||||
|
|
@ -366,7 +369,7 @@ function mkl_check {
|
|||
|
||||
echo "Started checking MKL"
|
||||
|
||||
LD_PRELOAD="${DIR_MKL}/libRblas.so ${DIR_MKL}/libRlapack.so ${DIR_MKL}/libmkl_vml_mc3.so ${DIR_MKL}/libmkl_vml_def.so ${DIR_MKL}/libmkl_gnu_thread.so ${DIR_MKL}/libmkl_core.so ${DIR_MKL}/libmkl_gf_lp64.so ${DIR_MKL}/libiomp5.so ${DIR_MKL}/libmkl_gf_ilp64.so" MKL_INTERFACE_LAYER="GNU,LP64" MKL_THREADING_LAYER="GNU" Rscript ${R_BENCHMARK_SCRIPT}
|
||||
LD_PRELOAD="${DIR_MKL}/libRblas.so ${DIR_MKL}/libRlapack.so ${DIR_MKL}/libmkl_vml_mc3.so ${DIR_MKL}/libmkl_vml_def.so ${DIR_MKL}/libmkl_gnu_thread.so ${DIR_MKL}/libmkl_core.so ${DIR_MKL}/libmkl_gf_lp64.so ${DIR_MKL}/libiomp5.so ${DIR_MKL}/libmkl_gf_ilp64.so" MKL_INTERFACE_LAYER="GNU,LP64" MKL_THREADING_LAYER="GNU" Rscript -e "blasLibName='mkl'; source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
echo "Finished checking MKL"
|
||||
}
|
||||
|
|
@ -482,7 +485,7 @@ function blis_check {
|
|||
((PARALLEL_STEPS--))
|
||||
done
|
||||
|
||||
LD_PRELOAD="${DIR_BLIS}/libblis.so" BLIS_JC_NT=${COUNT_JC} BLIS_IC_NT=${COUNT_IC} BLIS_JR_NT=${COUNT_JR} BLIS_IR_NT=${COUNT_IR} Rscript ${R_BENCHMARK_SCRIPT}
|
||||
LD_PRELOAD="${DIR_BLIS}/libblis.so" BLIS_JC_NT=${COUNT_JC} BLIS_IC_NT=${COUNT_IC} BLIS_JR_NT=${COUNT_JR} BLIS_IR_NT=${COUNT_IR} Rscript -e "blasLibName='blis'; source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
echo "Finished checking BLIS"
|
||||
}
|
||||
|
|
@ -598,7 +601,7 @@ function cublas_check {
|
|||
|
||||
echo "Started checking cuBLAS"
|
||||
|
||||
NVBLAS_CONFIG_FILE="${DIR_CUBLAS}/nvblas.conf" LD_PRELOAD="/usr/lib/x86_64-linux-gnu/libnvblas.so.6.5 /usr/lib/x86_64-linux-gnu/libcublas.so.6.5" Rscript ${R_BENCHMARK_SCRIPT}
|
||||
NVBLAS_CONFIG_FILE="${DIR_CUBLAS}/nvblas.conf" LD_PRELOAD="/usr/lib/x86_64-linux-gnu/libnvblas.so.6.5 /usr/lib/x86_64-linux-gnu/libcublas.so.6.5" Rscript -e "blasLibName='cublas'; source('${R_BENCHMARK_SCRIPT}')"
|
||||
|
||||
echo "Finished checking cuBLAS"
|
||||
}
|
||||
|
|
@ -620,13 +623,13 @@ else
|
|||
NPROC=${PROCESSOR_CPUS}
|
||||
;;
|
||||
test_sample)
|
||||
R_BENCHMARK_SCRIPT="sample-benchmark.R"
|
||||
R_BENCHMARK_SCRIPT="benchmark-sample.R"
|
||||
;;
|
||||
test_urbanek)
|
||||
R_BENCHMARK_SCRIPT="R-benchmark-25.R"
|
||||
R_BENCHMARK_SCRIPT="benchmark-urbanek.R"
|
||||
;;
|
||||
test_revolution)
|
||||
R_BENCHMARK_SCRIPT="revolution-benchmark.R"
|
||||
R_BENCHMARK_SCRIPT="benchmark-revolution.R"
|
||||
;;
|
||||
*)
|
||||
$i
|
||||
|
|
|
|||
Loading…
Reference in New Issue