mirror of
https://github.com/andre-wojtowicz/blas-benchmarks
synced 2024-11-22 11:05:27 +01:00
added checking multithreading by ld preload for all cpu libraries;
externalized checkpoint to bash script; added functions for each library; added info about current process
This commit is contained in:
parent
4ccadeaded
commit
fd5e9d734f
438
install-env.sh
438
install-env.sh
@ -2,47 +2,50 @@
|
||||
|
||||
WGET_OPTIONS="--no-check-certificate"
|
||||
MRO_VERSION="3.2.4"
|
||||
CHECKPOINT_DATE="2016-04-01"
|
||||
R_SAMPLE_BENCHMARK="Rscript sample-benchmark.R"
|
||||
DIR_BLAP="/opt/blap-lib"
|
||||
|
||||
# update debian repos & upgrade packages
|
||||
apt-get update
|
||||
DEBIAN_FRONTEND=noninteractive apt-get -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confnew" upgrade
|
||||
function mro_install {
|
||||
|
||||
# install new packages for R
|
||||
apt-get -y install build-essential gfortran ed htop libxml2-dev ca-certificates curl libcurl4-openssl-dev gdebi-core sshpass git cpufrequtils
|
||||
echo "Started installing Microsoft R Open and dependencies."
|
||||
|
||||
# disable CPU throttling for ATLAS multi-threading
|
||||
echo performance | tee /sys/devices/system/cpu/cpu**/cpufreq/scaling_governor
|
||||
# update debian repos & upgrade packages
|
||||
apt-get update
|
||||
DEBIAN_FRONTEND=noninteractive apt-get -y -o Dpkg::Options::="--force-confdef" -o Dpkg::Options::="--force-confnew" upgrade
|
||||
|
||||
# hack with Microsoft R Open deps
|
||||
wget ${WGET_OPTIONS} http://ftp.pl.debian.org/debian/pool/main/libj/libjpeg8/libjpeg8_8d1-2_amd64.deb
|
||||
gdebi -n libjpeg8_8d1-2_amd64.deb
|
||||
rm libjpeg8_8d1-2_amd64.deb
|
||||
# install new packages for R
|
||||
apt-get -y install build-essential gfortran ed htop libxml2-dev ca-certificates curl libcurl4-openssl-dev gdebi-core sshpass git cpufrequtils
|
||||
|
||||
# install Microsoft R Open
|
||||
wget ${WGET_OPTIONS} https://mran.microsoft.com/install/mro/${MRO_VERSION}/MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
|
||||
gdebi -n MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
|
||||
rm MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
|
||||
# disable CPU throttling for ATLAS multi-threading
|
||||
echo performance | tee /sys/devices/system/cpu/cpu**/cpufreq/scaling_governor
|
||||
|
||||
# make symbolic link to R libraries dir
|
||||
ln -s /usr/lib64/MRO-${MRO_VERSION}/R-${MRO_VERSION}/lib/R/lib/ /opt/MRO-lib
|
||||
# hack with Microsoft R Open deps
|
||||
wget ${WGET_OPTIONS} http://ftp.pl.debian.org/debian/pool/main/libj/libjpeg8/libjpeg8_8d1-2_amd64.deb
|
||||
gdebi -n libjpeg8_8d1-2_amd64.deb
|
||||
rm libjpeg8_8d1-2_amd64.deb
|
||||
|
||||
# make directory for R checkpoint
|
||||
mkdir ~/.checkpoint
|
||||
# install Microsoft R Open
|
||||
wget ${WGET_OPTIONS} https://mran.microsoft.com/install/mro/${MRO_VERSION}/MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
|
||||
gdebi -n MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
|
||||
rm MRO-${MRO_VERSION}-Ubuntu-15.4.x86_64.deb
|
||||
|
||||
# make directory for BLAS and LAPACK libraries
|
||||
mkdir -p /opt/blap-lib/
|
||||
# make symbolic link to R libraries dir
|
||||
ln -s /usr/lib64/MRO-${MRO_VERSION}/R-${MRO_VERSION}/lib/R/lib/ /opt/MRO-lib
|
||||
|
||||
# Generic BLAS & LAPACK install/uninstall in R:
|
||||
#
|
||||
# install: mv /opt/MRO-lib/libRblas.so /opt/MRO-lib/libRblas.so.orig
|
||||
# mv /opt/MRO-lib/libRlapack.so /opt/MRO-lib/libRlapack.so.orig
|
||||
# ln -s /opt/blap-lib/xxx/libblas.so /opt/MRO-lib/libRblas.so
|
||||
# ln -s /opt/blap-lib/xxx/liblapack.so /opt/MRO-lib/libRlapack.so
|
||||
#
|
||||
# uninstall: rm /opt/MRO-lib/libRblas.so
|
||||
# rm /opt/MRO-lib/libRlapack.so
|
||||
# mv /opt/MRO-lib/libRblas.so.orig /opt/MRO-lib/libRblas.so
|
||||
# mv /opt/MRO-lib/libRlapack.so.orig /opt/MRO-lib/libRlapack.so
|
||||
# prepare R checkpoint
|
||||
mkdir ~/.checkpoint
|
||||
Rscript -e "library(checkpoint); checkpoint('${CHECKPOINT_DATE}')"
|
||||
sed -i "1i\library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE)" sample-benchmark.R
|
||||
|
||||
# make directory for BLAS and LAPACK libraries
|
||||
mkdir -p ${DIR_BLAP}
|
||||
|
||||
# clean archives
|
||||
apt-get clean
|
||||
|
||||
echo "Finished installing Microsoft R Open and dependencies."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
##############################################################
|
||||
@ -57,14 +60,36 @@ mkdir -p /opt/blap-lib/
|
||||
# - single-threaded (reference) #
|
||||
##############################################################
|
||||
|
||||
mkdir /opt/blap-lib/netlib/
|
||||
DIR_NETLIB="${DIR_BLAP}/netlib"
|
||||
|
||||
apt-get -y install libblas3 liblapack3
|
||||
function netlib_install {
|
||||
|
||||
cp /usr/lib/libblas/libblas.so.3.0 /opt/blap-lib/netlib/
|
||||
cp /usr/lib/lapack/liblapack.so.3.0 /opt/blap-lib/netlib/
|
||||
echo "Started installing netlib."
|
||||
|
||||
apt-get -y purge libblas3 liblapack3
|
||||
mkdir ${DIR_NETLIB}
|
||||
|
||||
apt-get -y install libblas3 liblapack3
|
||||
|
||||
cp /usr/lib/libblas/libblas.so.3.0 ${DIR_NETLIB}
|
||||
cp /usr/lib/lapack/liblapack.so.3.0 ${DIR_NETLIB}
|
||||
|
||||
apt-get -y purge libblas3 liblapack3
|
||||
apt-get clean
|
||||
|
||||
echo "Installed files:"
|
||||
find ${DIR_NETLIB} -type f
|
||||
|
||||
echo "Finished installing netlib."
|
||||
}
|
||||
|
||||
function netlib_check {
|
||||
|
||||
echo "Started checking netlib."
|
||||
|
||||
LD_PRELOAD="${DIR_NETLIB}/libblas.so.3.0 ${DIR_NETLIB}/liblapack.so.3.0" ${R_SAMPLE_BENCHMARK}
|
||||
|
||||
echo "Finished checking netlib."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# ATLAS (st) #
|
||||
@ -73,14 +98,37 @@ apt-get -y purge libblas3 liblapack3
|
||||
# - single-threaded #
|
||||
##############################################################
|
||||
|
||||
mkdir /opt/blap-lib/atlas-st/
|
||||
DIR_ATLAS_ST="${DIR_BLAP}/atlas-st"
|
||||
|
||||
apt-get -y install libatlas3-base
|
||||
function atlas_st_install {
|
||||
|
||||
cp /usr/lib/atlas-base/atlas/libblas.so.3 /opt/blap-lib/atlas-st/
|
||||
cp /usr/lib/atlas-base/atlas/liblapack.so.3 /opt/blap-lib/atlas-st/
|
||||
echo "Started installing ATLAS (single-threaded)."
|
||||
|
||||
apt-get -y purge libatlas3-base
|
||||
mkdir ${DIR_ATLAS_ST}
|
||||
|
||||
apt-get -y install libatlas3-base
|
||||
|
||||
cp /usr/lib/atlas-base/libatlas.so.3 ${DIR_ATLAS_ST}
|
||||
cp /usr/lib/atlas-base/atlas/libblas.so.3 ${DIR_ATLAS_ST}
|
||||
cp /usr/lib/atlas-base/atlas/liblapack.so.3 ${DIR_ATLAS_ST}
|
||||
|
||||
apt-get -y purge libatlas3-base
|
||||
apt-get clean
|
||||
|
||||
echo "Installed files:"
|
||||
find ${DIR_ATLAS_ST} -type f
|
||||
|
||||
echo "Finished installing ATLAS (single-threaded)."
|
||||
}
|
||||
|
||||
function atlas_st_check {
|
||||
|
||||
echo "Started checking ATLAS (single-threaded)."
|
||||
|
||||
LD_PRELOAD="${DIR_ATLAS_ST}/libatlas.so.3 ${DIR_ATLAS_ST}/libblas.so.3 ${DIR_ATLAS_ST}/liblapack.so.3" ${R_SAMPLE_BENCHMARK}
|
||||
|
||||
echo "Finished checking ATLAS (single-threaded)."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# OpenBLAS #
|
||||
@ -89,41 +137,85 @@ apt-get -y purge libatlas3-base
|
||||
# - multi-threaded #
|
||||
##############################################################
|
||||
|
||||
mkdir /opt/blap-lib/openblas/
|
||||
DIR_OPENBLAS="${DIR_BLAP}/openblas"
|
||||
|
||||
apt-get -y install libopenblas-base
|
||||
function openblas_install {
|
||||
|
||||
cp /usr/lib/openblas-base/libblas.so.3 /opt/blap-lib/openblas/
|
||||
cp /usr/lib/openblas-base/liblapack.so.3 /opt/blap-lib/openblas/
|
||||
echo "Started installing OpenBLAS."
|
||||
|
||||
apt-get -y purge libopenblas-base
|
||||
mkdir ${DIR_OPENBLAS}
|
||||
|
||||
apt-get -y install libopenblas-base
|
||||
|
||||
cp /usr/lib/libopenblas.so.0 ${DIR_OPENBLAS}
|
||||
cp /usr/lib/openblas-base/libblas.so.3 ${DIR_OPENBLAS}
|
||||
cp /usr/lib/openblas-base/liblapack.so.3 ${DIR_OPENBLAS}
|
||||
|
||||
apt-get -y purge libopenblas-base
|
||||
apt-get clean
|
||||
|
||||
echo "Installed files:"
|
||||
find ${DIR_OPENBLAS} -type f
|
||||
|
||||
echo "Finished installing OpenBLAS."
|
||||
}
|
||||
|
||||
function openblas_check {
|
||||
|
||||
echo "Started checking OpenBLAS."
|
||||
|
||||
LD_PRELOAD="${DIR_OPENBLAS}/libopenblas.so.0 ${DIR_OPENBLAS}/libblas.so.3 ${DIR_OPENBLAS}/liblapack.so.3" ${R_SAMPLE_BENCHMARK}
|
||||
|
||||
echo "Finished checking OpenBLAS."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# ATLAS (mt) #
|
||||
# - http://math-atlas.sourceforge.net/ #
|
||||
# - BLAS + LAPACK #
|
||||
# - BLAS + netlib LAPACK #
|
||||
# - multi-threaded #
|
||||
##############################################################
|
||||
|
||||
mkdir /opt/blap-lib/atlas-mt/
|
||||
DIR_ATLAS_MT="${DIR_BLAP}/atlas-mt"
|
||||
|
||||
curl -L https://sourceforge.net/projects/math-atlas/files/Developer%20%28unstable%29/3.11.38/atlas3.11.38.tar.bz2/download > atlas3.11.38.tar.bz2
|
||||
tar -xvf atlas3.11.38.tar.bz2
|
||||
rm atlas3.11.38.tar.bz2
|
||||
function atlas_mt_install {
|
||||
|
||||
cd ATLAS
|
||||
mkdir build
|
||||
cd build
|
||||
echo "Started installing ATLAS (multi-threaded)."
|
||||
|
||||
wget ${WGET_OPTIONS} http://www.netlib.org/lapack/lapack-3.6.0.tgz
|
||||
mkdir ${DIR_ATLAS_MT}
|
||||
|
||||
../configure --shared --with-netlib-lapack-tarfile=`pwd`/lapack-3.6.0.tgz
|
||||
make
|
||||
curl -L https://sourceforge.net/projects/math-atlas/files/Developer%20%28unstable%29/3.11.38/atlas3.11.38.tar.bz2/download > atlas3.11.38.tar.bz2
|
||||
tar -xvf atlas3.11.38.tar.bz2
|
||||
rm atlas3.11.38.tar.bz2
|
||||
|
||||
cp lib/libtatlas.so /opt/blap-lib/atlas-mt/
|
||||
cd ATLAS
|
||||
mkdir build
|
||||
cd build
|
||||
|
||||
cd ../../
|
||||
rm -r ATLAS
|
||||
wget ${WGET_OPTIONS} http://www.netlib.org/lapack/lapack-3.6.0.tgz
|
||||
|
||||
../configure --shared --with-netlib-lapack-tarfile=`pwd`/lapack-3.6.0.tgz
|
||||
make
|
||||
|
||||
cp lib/libtatlas.so ${DIR_ATLAS_MT}
|
||||
|
||||
cd ../../
|
||||
rm -r ATLAS
|
||||
|
||||
echo "Installed files:"
|
||||
find ${DIR_ATLAS_MT} -type f
|
||||
|
||||
echo "Finished installing ATLAS (multi-threaded)."
|
||||
}
|
||||
|
||||
function atlas_mt_check {
|
||||
|
||||
echo "Started checking ATLAS (multi-threaded)."
|
||||
|
||||
LD_PRELOAD="${DIR_ATLAS_MT}/libtatlas.so" ${R_SAMPLE_BENCHMARK}
|
||||
|
||||
echo "Finished checking ATLAS (multi-threaded)."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# GotoBLAS2 #
|
||||
@ -132,20 +224,50 @@ rm -r ATLAS
|
||||
# - multi-threaded #
|
||||
##############################################################
|
||||
|
||||
mkdir /opt/blap-lib/gotoblas2/
|
||||
DIR_GOTOBLAS2="${DIR_BLAP}/gotoblas2"
|
||||
|
||||
wget ${WGET_OPTIONS} https://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/SurviveGotoBLAS2_3.141.tar.gz
|
||||
tar -xvf SurviveGotoBLAS2_3.141.tar.gz
|
||||
rm SurviveGotoBLAS2_3.141.tar.gz
|
||||
function gotoblas2_install {
|
||||
|
||||
cd survivegotoblas2-3.141
|
||||
make -j `nproc`
|
||||
cd ..
|
||||
echo "Started installing GotoBLAS2."
|
||||
|
||||
cp survivegotoblas2-3.141/exports/libgoto2_nehalemp-r3.141_blas.so /opt/blap-lib/gotoblas2/
|
||||
cp survivegotoblas2-3.141/exports/libgoto2_nehalemp-r3.141_lapack.so /opt/blap-lib/gotoblas2/
|
||||
mkdir ${DIR_GOTOBLAS2}
|
||||
|
||||
rm -r survivegotoblas2-3.141
|
||||
wget ${WGET_OPTIONS} https://prs.ism.ac.jp/~nakama/SurviveGotoBLAS2/SurviveGotoBLAS2_3.141.tar.gz
|
||||
tar -xvf SurviveGotoBLAS2_3.141.tar.gz
|
||||
rm SurviveGotoBLAS2_3.141.tar.gz
|
||||
|
||||
cd survivegotoblas2-3.141
|
||||
make REFBLAS_ANTILOGY=1 NO_CBLAS=1 GOTOBLASLIBSONAME=libgoto2blas.so GOTOLAPACKLIBSONAME=libgoto2lapack.so -j `nproc`
|
||||
|
||||
cp exports/libgoto2blas.so ${DIR_GOTOBLAS2}
|
||||
cp exports/libgoto2lapack.so ${DIR_GOTOBLAS2}
|
||||
|
||||
cd ..
|
||||
rm -r survivegotoblas2-3.141
|
||||
|
||||
echo "${DIR_GOTOBLAS2}" > /etc/ld.so.conf.d/gotoblas2.conf
|
||||
ldconfig
|
||||
|
||||
Rscript -e "library(checkpoint); checkpoint('${CHECKPOINT_DATE}', scanForPackages=FALSE, verbose=FALSE); install.packages('RhpcBLASctl')"
|
||||
|
||||
echo "Installed files:"
|
||||
find ${DIR_GOTOBLAS2} -type f
|
||||
|
||||
echo "Finished installing GotoBLAS2."
|
||||
}
|
||||
|
||||
function gotoblas2_check {
|
||||
|
||||
echo "Started checking GotoBLAS2."
|
||||
|
||||
sed "2i\library(RhpcBLASctl); blas_set_num_threads(`nproc`)" sample-benchmark.R > sample-benchmark-gotoblas2.R
|
||||
|
||||
LD_PRELOAD="${DIR_GOTOBLAS2}/libgoto2blas.so ${DIR_GOTOBLAS2}/libgoto2lapack.so" GOTO_NUM_THREADS=`nproc` Rscript sample-benchmark-gotoblas2.R
|
||||
|
||||
rm sample-benchmark-gotoblas2.R
|
||||
|
||||
echo "Finished checking GotoBLAS2."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# MKL #
|
||||
@ -154,17 +276,36 @@ rm -r survivegotoblas2-3.141
|
||||
# - multi-threaded #
|
||||
##############################################################
|
||||
|
||||
mkdir /opt/blap-lib/mkl/
|
||||
DIR_MKL="${DIR_BLAP}/mkl"
|
||||
|
||||
wget ${WGET_OPTIONS} https://mran.microsoft.com/install/mro/${MRO_VERSION}/RevoMath-${MRO_VERSION}.tar.gz
|
||||
tar -xvzf RevoMath-${MRO_VERSION}.tar.gz
|
||||
rm RevoMath-${MRO_VERSION}.tar.gz
|
||||
sed -i '16,18d' RevoMath/RevoMath.sh
|
||||
function mkl_install {
|
||||
|
||||
mv RevoMath /opt/blap-lib/mkl/
|
||||
echo "Started installing MKL."
|
||||
|
||||
# install: cd /opt/blap-lib/mkl/RevoMath ; echo 1 | ./RevoMath.sh
|
||||
# uninstall: cd /opt/blap-lib/mkl/RevoMath ; echo 2 | ./RevoMath.sh
|
||||
mkdir ${DIR_MKL}
|
||||
|
||||
wget ${WGET_OPTIONS} https://mran.microsoft.com/install/mro/${MRO_VERSION}/RevoMath-${MRO_VERSION}.tar.gz
|
||||
tar -xvzf RevoMath-${MRO_VERSION}.tar.gz
|
||||
rm RevoMath-${MRO_VERSION}.tar.gz
|
||||
|
||||
cp RevoMath/mkl/libs/*.so ${DIR_MKL}
|
||||
|
||||
rm RevoMath -r
|
||||
|
||||
echo "Installed files:"
|
||||
find ${DIR_MKL} -type f
|
||||
|
||||
echo "Finished installing MKL."
|
||||
}
|
||||
|
||||
function mkl_check {
|
||||
|
||||
echo "Started checking MKL."
|
||||
|
||||
LD_PRELOAD="${DIR_MKL}/libRblas.so ${DIR_MKL}/libRlapack.so ${DIR_MKL}/libmkl_vml_mc3.so ${DIR_MKL}/libmkl_vml_def.so ${DIR_MKL}/libmkl_gnu_thread.so ${DIR_MKL}/libmkl_core.so ${DIR_MKL}/libmkl_gf_lp64.so ${DIR_MKL}/libiomp5.so ${DIR_MKL}/libmkl_gf_ilp64.so" MKL_INTERFACE_LAYER="GNU,LP64" MKL_THREADING_LAYER="GNU" ${R_SAMPLE_BENCHMARK}
|
||||
|
||||
echo "Finished checking MKL."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# BLIS #
|
||||
@ -173,20 +314,41 @@ mv RevoMath /opt/blap-lib/mkl/
|
||||
# - multi-threaded #
|
||||
##############################################################
|
||||
|
||||
mkdir /opt/blap-lib/blis/
|
||||
DIR_BLIS="${DIR_BLAP}/blis"
|
||||
|
||||
wget ${WGET_OPTIONS} https://github.com/flame/blis/archive/0.2.0.tar.gz -O blis-0.2.0.tar.gz
|
||||
tar -xvzf blis-0.2.0.tar.gz
|
||||
rm blis-0.2.0.tar.gz
|
||||
function blis_install {
|
||||
|
||||
cd blis-0.2.0
|
||||
./configure --enable-shared auto
|
||||
make -j `nproc`
|
||||
cd ..
|
||||
echo "Started installing BLIS."
|
||||
|
||||
cp `find ./blis-0.2.0/ -name "libblis.so"` /opt/blap-lib/blis/
|
||||
mkdir ${DIR_BLIS}
|
||||
|
||||
rm -r blis-0.2.0
|
||||
git clone https://github.com/flame/blis.git
|
||||
cd blis
|
||||
git checkout 0b01d355ae861754ae2da6c9a545474af010f02e
|
||||
|
||||
./configure -t pthreads --enable-shared auto
|
||||
make -j `nproc`
|
||||
cd ..
|
||||
|
||||
cp `find ./blis/ -name "libblis.so"` ${DIR_BLIS}
|
||||
|
||||
rm -r blis
|
||||
|
||||
echo "Installed files:"
|
||||
find ${DIR_BLIS} -type f
|
||||
|
||||
echo "Finished installing BLIS."
|
||||
}
|
||||
|
||||
function blis_check {
|
||||
|
||||
echo "Started checking BLIS."
|
||||
|
||||
# TODO: auto set variables according to https://github.com/flame/blis/wiki/Multithreading
|
||||
LD_PRELOAD="${DIR_BLIS}/libblis.so" BLIS_JC_NT=2 BLIS_IC_NT=1 BLIS_JR_NT=1 BLIS_IR_NT=1 ${R_SAMPLE_BENCHMARK}
|
||||
|
||||
echo "Finished checking BLIS."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
##############################################################
|
||||
@ -201,13 +363,21 @@ rm -r blis-0.2.0
|
||||
# - OpenCL #
|
||||
##############################################################
|
||||
|
||||
wget ${WGET_OPTIONS} https://github.com/clMathLibraries/clBLAS/archive/v2.10.tar.gz -O clBLAS-2.10.tar.gz
|
||||
tar -xvzf clBLAS-2.10.tar.gz
|
||||
rm clBLAS-2.10.tar.gz
|
||||
function clblas_install {
|
||||
|
||||
#cd clBLAS-2.10
|
||||
#
|
||||
#cd ..
|
||||
echo "Started installing clBLAS."
|
||||
|
||||
wget ${WGET_OPTIONS} https://github.com/clMathLibraries/clBLAS/archive/v2.10.tar.gz -O clBLAS-2.10.tar.gz
|
||||
tar -xvzf clBLAS-2.10.tar.gz
|
||||
rm clBLAS-2.10.tar.gz
|
||||
|
||||
#cd clBLAS-2.10
|
||||
#
|
||||
#cd ..
|
||||
echo "TODO!"
|
||||
|
||||
echo "Finished installing clBLAS."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# cuBLAS (NVBLAS) #
|
||||
@ -216,31 +386,40 @@ rm clBLAS-2.10.tar.gz
|
||||
# - CUDA #
|
||||
##############################################################
|
||||
|
||||
# TODO: cuSOLVE (dense, LAPACK)?
|
||||
function cublas_install {
|
||||
|
||||
mkdir /opt/blap-lib/cublas/
|
||||
echo "Started installing cuBLAS."
|
||||
|
||||
# Ubuntu dependencies
|
||||
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/x/x-kit/python3-xkit_0.5.0ubuntu2_all.deb
|
||||
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/s/screen-resolution-extra/screen-resolution-extra_0.17.1_all.deb
|
||||
gdebi -n python3-xkit_0.5.0ubuntu2_all.deb
|
||||
gdebi -n screen-resolution-extra_0.17.1_all.deb
|
||||
# TODO: cuSOLVE (dense, LAPACK)?
|
||||
|
||||
wget ${WGET_OPTIONS} http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1504/x86_64/cuda-repo-ubuntu1504_7.5-18_amd64.deb
|
||||
gdebi -n cuda-repo-ubuntu1504_7.5-18_amd64.deb
|
||||
rm cuda-repo-ubuntu1504_7.5-18_amd64.deb
|
||||
mkdir /opt/blap-lib/cublas
|
||||
|
||||
apt-get update
|
||||
apt-get install cuda
|
||||
# Ubuntu dependencies
|
||||
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/x/x-kit/python3-xkit_0.5.0ubuntu2_all.deb
|
||||
wget ${WGET_OPTIONS} http://de.archive.ubuntu.com/ubuntu/pool/main/s/screen-resolution-extra/screen-resolution-extra_0.17.1_all.deb
|
||||
gdebi -n python3-xkit_0.5.0ubuntu2_all.deb
|
||||
gdebi -n screen-resolution-extra_0.17.1_all.deb
|
||||
|
||||
echo "NVBLAS_LOGFILE nvblas.log
|
||||
NVBLAS_CPU_BLAS_LIB /opt/blap-lib/netlib/libblas.so.3.0
|
||||
NVBLAS_GPU_LIST ALL0
|
||||
NVBLAS_TILE_DIM 2048
|
||||
NVBLAS_AUTOPIN_MEM_ENABLED" > /opt/blap-lib/cublas/nvblas.conf
|
||||
wget ${WGET_OPTIONS} http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1504/x86_64/cuda-repo-ubuntu1504_7.5-18_amd64.deb
|
||||
gdebi -n cuda-repo-ubuntu1504_7.5-18_amd64.deb
|
||||
rm cuda-repo-ubuntu1504_7.5-18_amd64.deb
|
||||
|
||||
# run R:
|
||||
# NVBLAS_CONFIG_FILE=/opt/blap-lib/cublas/nvblas.conf LD_PRELOAD="/usr/local/cuda-7.5/targets/x86_64-linux/lib/libnvblas.so.7.5 /usr/local/cuda-7.5/targets/x86_64-linux/lib/libcublas.so.7.5" R
|
||||
apt-get update
|
||||
apt-get install cuda
|
||||
|
||||
echo "NVBLAS_LOGFILE nvblas.log
|
||||
NVBLAS_CPU_BLAS_LIB /opt/blap-lib/netlib/libblas.so.3.0
|
||||
NVBLAS_GPU_LIST ALL0
|
||||
NVBLAS_TILE_DIM 2048
|
||||
NVBLAS_AUTOPIN_MEM_ENABLED" > /opt/blap-lib/cublas/nvblas.conf
|
||||
|
||||
apt-get clean
|
||||
|
||||
# run R:
|
||||
# NVBLAS_CONFIG_FILE=/opt/blap-lib/cublas/nvblas.conf LD_PRELOAD="/usr/local/cuda-7.5/targets/x86_64-linux/lib/libnvblas.so.7.5 /usr/local/cuda-7.5/targets/x86_64-linux/lib/libcublas.so.7.5" R
|
||||
|
||||
echo "Finished installing cuBLAS."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# MAGMA #
|
||||
@ -249,9 +428,40 @@ NVBLAS_AUTOPIN_MEM_ENABLED" > /opt/blap-lib/cublas/nvblas.conf
|
||||
# - OpenCL, CUDA #
|
||||
##############################################################
|
||||
|
||||
function magma_install {
|
||||
|
||||
echo "Started installing MAGMA."
|
||||
|
||||
echo "TODO!"
|
||||
|
||||
echo "Finished installing MAGMA."
|
||||
}
|
||||
|
||||
##############################################################
|
||||
# CULA #
|
||||
# - http://www.culatools.com/ #
|
||||
# - LAPACK #
|
||||
# - CUDA #
|
||||
##############################################################
|
||||
|
||||
function cula_install {
|
||||
|
||||
echo "Started installing CULA."
|
||||
|
||||
echo "TODO!"
|
||||
|
||||
echo "Finished installing CULA."
|
||||
}
|
||||
|
||||
|
||||
##############################################################
|
||||
##############################################################
|
||||
|
||||
if [ $# -eq 0 ]; then
|
||||
echo "No arguments supplied"
|
||||
else
|
||||
for i in "$@"
|
||||
do
|
||||
$i
|
||||
done
|
||||
fi
|
||||
|
||||
@ -1,6 +1,3 @@
|
||||
library(checkpoint)
|
||||
checkpoint("2016-04-01")
|
||||
|
||||
library(rbenchmark)
|
||||
|
||||
f = function()
|
||||
|
||||
Loading…
Reference in New Issue
Block a user