# ---- download-data ---- source("init.R") source("utils.R") setup.logger(LOGGER.OUTPUT.S1.FILE, LOGGER.OVERWRITE.EXISTING.FILES) flog.info("Step 1: download dataset collection") for (dir.name in dir(DATASETS.DIR)) { flog.info(paste("Dataset:", dir.name)) dest.dir = gsub(DATASET.NAME.PATTERN, dir.name, DATASET.ORIGINAL.DIR) config.yaml.file = file.path(DATASETS.DIR, dir.name, DATASET.CONFIG.FILE) urls.list = yaml.load_file(config.yaml.file)$urls if (!dir.exists(dest.dir)) { dir.create(dest.dir) } for (url in urls.list) { flog.info(paste("URL:", url)) dest.file = URLdecode(basename(url)) dest.file.path = file.path(dest.dir, dest.file) if (!file.exists(dest.file.path) | OVERWRITE.OUTPUT.FILES) { tryCatch( raw.content <- getBinaryURL(url, .opts = curlOptions(ssl.verifypeer = SSL.VERIFY.PEER)), error = function(e){flog.error(e); stop(e)} ) writeBin(raw.content, dest.file.path) } else { flog.warn(paste("Target file", basename(dest.file.path), "already exists, skipping")) } } flog.info(paste(rep("*", 25), collapse = "")) }