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@ -1,3 +1,5 @@
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{-# LANGUAGE TypeFamilies #-}
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module GEval.Core
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module GEval.Core
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( geval,
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( geval,
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gevalCore,
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gevalCore,
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@ -13,6 +15,7 @@ module GEval.Core
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defaultTestName,
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defaultTestName,
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defaultOutFile,
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defaultOutFile,
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defaultExpectedFile,
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defaultExpectedFile,
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defaultInputFile,
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defaultMetric,
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defaultMetric,
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getExpectedDirectory,
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getExpectedDirectory,
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configFileName
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configFileName
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@ -43,6 +46,7 @@ import GEval.ClippEU
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import GEval.PrecisionRecall
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import GEval.PrecisionRecall
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import GEval.ClusteringMetrics
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import GEval.ClusteringMetrics
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import GEval.LogLossHashed
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import GEval.LogLossHashed
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import GEval.CharMatch
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import qualified Data.HashMap.Strict as M
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import qualified Data.HashMap.Strict as M
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@ -53,7 +57,7 @@ type MetricValue = Double
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defaultLogLossHashedSize :: Word32
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defaultLogLossHashedSize :: Word32
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defaultLogLossHashedSize = 10
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defaultLogLossHashedSize = 10
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data Metric = RMSE | MSE | BLEU | Accuracy | ClippEU | FMeasure Double | NMI | LogLossHashed Word32
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data Metric = RMSE | MSE | BLEU | Accuracy | ClippEU | FMeasure Double | NMI | LogLossHashed Word32 | CharMatch
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deriving (Eq)
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deriving (Eq)
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instance Show Metric where
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instance Show Metric where
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@ -70,6 +74,7 @@ instance Show Metric where
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""
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""
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else
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else
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(show nbOfBits))
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(show nbOfBits))
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show CharMatch = "CharMatch"
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instance Read Metric where
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instance Read Metric where
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readsPrec _ ('R':'M':'S':'E':theRest) = [(RMSE, theRest)]
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readsPrec _ ('R':'M':'S':'E':theRest) = [(RMSE, theRest)]
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@ -84,7 +89,7 @@ instance Read Metric where
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readsPrec p ('L':'o':'g':'L':'o':'s':'s':'H':'a':'s':'h':'e':'d':theRest) = case readsPrec p theRest of
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readsPrec p ('L':'o':'g':'L':'o':'s':'s':'H':'a':'s':'h':'e':'d':theRest) = case readsPrec p theRest of
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[(nbOfBits, theRest)] -> [(LogLossHashed nbOfBits, theRest)]
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[(nbOfBits, theRest)] -> [(LogLossHashed nbOfBits, theRest)]
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_ -> [(LogLossHashed defaultLogLossHashedSize, theRest)]
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_ -> [(LogLossHashed defaultLogLossHashedSize, theRest)]
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readsPrec p ('C':'h':'a':'r':'M':'a':'t':'c':'h':theRest) = [(CharMatch, theRest)]
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data MetricOrdering = TheLowerTheBetter | TheHigherTheBetter
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data MetricOrdering = TheLowerTheBetter | TheHigherTheBetter
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@ -97,11 +102,13 @@ getMetricOrdering ClippEU = TheHigherTheBetter
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getMetricOrdering (FMeasure _) = TheHigherTheBetter
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getMetricOrdering (FMeasure _) = TheHigherTheBetter
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getMetricOrdering NMI = TheHigherTheBetter
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getMetricOrdering NMI = TheHigherTheBetter
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getMetricOrdering (LogLossHashed _) = TheLowerTheBetter
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getMetricOrdering (LogLossHashed _) = TheLowerTheBetter
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getMetricOrdering CharMatch = TheHigherTheBetter
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defaultOutDirectory = "."
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defaultOutDirectory = "."
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defaultTestName = "test-A"
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defaultTestName = "test-A"
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defaultOutFile = "out.tsv"
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defaultOutFile = "out.tsv"
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defaultExpectedFile = "expected.tsv"
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defaultExpectedFile = "expected.tsv"
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defaultInputFile = "in.tsv"
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defaultMetric :: Metric
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defaultMetric :: Metric
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defaultMetric = RMSE
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defaultMetric = RMSE
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@ -115,6 +122,7 @@ data GEvalSpecification = GEvalSpecification
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gesTestName :: String,
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gesTestName :: String,
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gesOutFile :: String,
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gesOutFile :: String,
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gesExpectedFile :: String,
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gesExpectedFile :: String,
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gesInputFile :: String,
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gesMetric :: Metric }
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gesMetric :: Metric }
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getExpectedDirectory :: GEvalSpecification -> FilePath
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getExpectedDirectory :: GEvalSpecification -> FilePath
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@ -133,9 +141,12 @@ data GEvalException = NoExpectedFile FilePath
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| NoOutDirectory FilePath
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| NoOutDirectory FilePath
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| NoExpectedTestDirectory FilePath
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| NoExpectedTestDirectory FilePath
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| NoOutTestDirectory FilePath
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| NoOutTestDirectory FilePath
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| NoInputFile FilePath
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| FileAlreadyThere FilePath
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| FileAlreadyThere FilePath
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| TooFewLines
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| TooFewLines
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| TooManyLines
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| TooManyLines
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| TooFewLinesInInput
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| TooManyLinesInInput
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| EmptyOutput
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| EmptyOutput
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| UnexpectedData String
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| UnexpectedData String
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deriving (Eq)
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deriving (Eq)
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@ -149,9 +160,12 @@ instance Show GEvalException where
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show (NoOutDirectory filePath) = somethingWrongWithFilesMessage "No directory with the test results" filePath
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show (NoOutDirectory filePath) = somethingWrongWithFilesMessage "No directory with the test results" filePath
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show (NoExpectedTestDirectory filePath) = somethingWrongWithFilesMessage "No test subdirectory with the expected results" filePath
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show (NoExpectedTestDirectory filePath) = somethingWrongWithFilesMessage "No test subdirectory with the expected results" filePath
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show (NoOutTestDirectory filePath) = somethingWrongWithFilesMessage "No test subdirectory with the results obtained" filePath
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show (NoOutTestDirectory filePath) = somethingWrongWithFilesMessage "No test subdirectory with the results obtained" filePath
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show (NoInputFile filePath) = somethingWrongWithFilesMessage "No file with the input" filePath
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show (FileAlreadyThere filePath) = somethingWrongWithFilesMessage "File already there" filePath
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show (FileAlreadyThere filePath) = somethingWrongWithFilesMessage "File already there" filePath
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show TooFewLines = "Too few lines in the output file"
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show TooFewLines = "Too few lines in the output file"
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show TooManyLines = "Too many lines in the output file"
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show TooManyLines = "Too many lines in the output file"
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show TooFewLinesInInput = "Too few lines in the input file"
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show TooManyLinesInInput = "Too many lines in the input file"
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show EmptyOutput = "The output file is empty"
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show EmptyOutput = "The output file is empty"
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show (UnexpectedData message) = "Unexpected data [" ++ message ++ "]"
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show (UnexpectedData message) = "Unexpected data [" ++ message ++ "]"
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@ -165,6 +179,7 @@ defaultGEvalSpecification = GEvalSpecification {
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gesTestName = defaultTestName,
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gesTestName = defaultTestName,
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gesOutFile = defaultOutFile,
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gesOutFile = defaultOutFile,
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gesExpectedFile = defaultExpectedFile,
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gesExpectedFile = defaultExpectedFile,
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gesInputFile = defaultInputFile,
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gesMetric = defaultMetric }
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gesMetric = defaultMetric }
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isEmptyFile :: FilePath -> IO (Bool)
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isEmptyFile :: FilePath -> IO (Bool)
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@ -178,9 +193,10 @@ geval gevalSpec = do
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unlessM (D.doesDirectoryExist expectedDirectory) $ throwM $ NoExpectedDirectory expectedDirectory
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unlessM (D.doesDirectoryExist expectedDirectory) $ throwM $ NoExpectedDirectory expectedDirectory
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unlessM (D.doesDirectoryExist outTestDirectory) $ throwM $ NoOutTestDirectory outTestDirectory
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unlessM (D.doesDirectoryExist outTestDirectory) $ throwM $ NoOutTestDirectory outTestDirectory
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unlessM (D.doesDirectoryExist expectedTestDirectory) $ throwM $ NoExpectedTestDirectory expectedTestDirectory
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unlessM (D.doesDirectoryExist expectedTestDirectory) $ throwM $ NoExpectedTestDirectory expectedTestDirectory
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gevalCore metric expectedFilePath outFilePath
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gevalCore metric inputFilePath expectedFilePath outFilePath
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where expectedFilePath = expectedTestDirectory </> (gesExpectedFile gevalSpec)
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where expectedFilePath = expectedTestDirectory </> (gesExpectedFile gevalSpec)
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outFilePath = outTestDirectory </> (gesOutFile gevalSpec)
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outFilePath = outTestDirectory </> (gesOutFile gevalSpec)
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inputFilePath = expectedTestDirectory </> (gesInputFile gevalSpec)
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expectedTestDirectory = expectedDirectory </> testName
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expectedTestDirectory = expectedDirectory </> testName
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outTestDirectory = outDirectory </> testName
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outTestDirectory = outDirectory </> testName
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expectedDirectory = getExpectedDirectory gevalSpec
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expectedDirectory = getExpectedDirectory gevalSpec
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@ -188,22 +204,22 @@ geval gevalSpec = do
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testName = gesTestName gevalSpec
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testName = gesTestName gevalSpec
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metric = gesMetric gevalSpec
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metric = gesMetric gevalSpec
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gevalCore :: Metric -> String -> String -> IO (MetricValue)
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gevalCore :: Metric -> String -> String -> String -> IO (MetricValue)
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gevalCore RMSE expectedFilePath outFilePath = do
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gevalCore RMSE inputFilePath expectedFilePath outFilePath = do
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mse <- gevalCore MSE expectedFilePath outFilePath
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mse <- gevalCore MSE inputFilePath expectedFilePath outFilePath
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return $ mse ** 0.5
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return $ mse ** 0.5
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gevalCore metric expectedFilePath outFilePath = do
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gevalCore metric inputFilePath expectedFilePath outFilePath = do
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unlessM (D.doesFileExist expectedFilePath) $ throwM $ NoExpectedFile expectedFilePath
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unlessM (D.doesFileExist expectedFilePath) $ throwM $ NoExpectedFile expectedFilePath
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unlessM (D.doesFileExist outFilePath) $ throwM $ NoOutFile outFilePath
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unlessM (D.doesFileExist outFilePath) $ throwM $ NoOutFile outFilePath
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whenM (isEmptyFile outFilePath) $ throwM $ EmptyOutput
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whenM (isEmptyFile outFilePath) $ throwM $ EmptyOutput
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gevalCore' metric expectedFilePath outFilePath
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gevalCore' metric inputFilePath expectedFilePath outFilePath
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gevalCore' :: Metric -> String -> String -> IO (MetricValue)
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gevalCore' :: Metric -> String -> String -> String -> IO (MetricValue)
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gevalCore' MSE = gevalCore'' outParser outParser itemError averageC id
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gevalCore' MSE _ = gevalCoreWithoutInput outParser outParser itemError averageC id
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where outParser = getValue . TR.double
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where outParser = getValue . TR.double
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gevalCore' BLEU = gevalCore'' (Prelude.map Prelude.words . DLS.splitOn "\t" . unpack) (Prelude.words . unpack) bleuCombine bleuAgg bleuFinal
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gevalCore' BLEU _ = gevalCoreWithoutInput (Prelude.map Prelude.words . DLS.splitOn "\t" . unpack) (Prelude.words . unpack) bleuCombine bleuAgg bleuFinal
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where bleuFinal (p1, p2, p3, p4, rl, l1, l2, l3, l4) = ((p1 /. l1) * (p2 /. l2) * (p3 /. l3) * (p4 /. l4)) ** 0.25 * (brevityPenalty l1 rl)
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where bleuFinal (p1, p2, p3, p4, rl, l1, l2, l3, l4) = ((p1 /. l1) * (p2 /. l2) * (p3 /. l3) * (p4 /. l4)) ** 0.25 * (brevityPenalty l1 rl)
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bleuCombine (refs, sen) = bleuStep refs sen
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bleuCombine (refs, sen) = bleuStep refs sen
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bleuAgg = CC.foldl bleuFuse (0, 0, 0, 0, 0, 0, 0, 0, 0)
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bleuAgg = CC.foldl bleuFuse (0, 0, 0, 0, 0, 0, 0, 0, 0)
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@ -212,10 +228,10 @@ gevalCore' BLEU = gevalCore'' (Prelude.map Prelude.words . DLS.splitOn "\t" . un
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| c >= r = 1.0
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| c >= r = 1.0
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| otherwise = exp (1.0 - (r /. c))
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| otherwise = exp (1.0 - (r /. c))
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gevalCore' Accuracy = gevalCore'' strip strip hitOrMiss averageC id
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gevalCore' Accuracy _ = gevalCoreWithoutInput strip strip hitOrMiss averageC id
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where hitOrMiss (x,y) = if x == y then 1.0 else 0.0
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where hitOrMiss (x,y) = if x == y then 1.0 else 0.0
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gevalCore' (FMeasure beta) = gevalCore'' outParser outParser getCount countAgg (fMeasureOnCounts beta)
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gevalCore' (FMeasure beta) _ = gevalCoreWithoutInput outParser outParser getCount countAgg (fMeasureOnCounts beta)
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where outParser = detected . getValue . TR.double
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where outParser = detected . getValue . TR.double
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expParser = expected . getValue . TR.decimal
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expParser = expected . getValue . TR.decimal
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expected 1 = True
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expected 1 = True
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@ -233,7 +249,7 @@ gevalCore' (FMeasure beta) = gevalCore'' outParser outParser getCount countAgg (
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getCount (False, False) = (0, 0, 0)
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getCount (False, False) = (0, 0, 0)
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countAgg = CC.foldl countFolder (0, 0, 0)
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countAgg = CC.foldl countFolder (0, 0, 0)
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gevalCore' ClippEU = gevalCore'' parseClippingSpecs parseClippings matchStep clippeuAgg finalStep
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gevalCore' ClippEU _ = gevalCoreWithoutInput parseClippingSpecs parseClippings matchStep clippeuAgg finalStep
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where
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where
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parseClippings = controlledParse lineClippingsParser
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parseClippings = controlledParse lineClippingsParser
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parseClippingSpecs = controlledParse lineClippingSpecsParser
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parseClippingSpecs = controlledParse lineClippingSpecsParser
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@ -243,12 +259,20 @@ gevalCore' ClippEU = gevalCore'' parseClippingSpecs parseClippings matchStep cli
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clippeuAgg = CC.foldl countFolder (0, 0, 0)
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clippeuAgg = CC.foldl countFolder (0, 0, 0)
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finalStep counts = f2MeasureOnCounts counts
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finalStep counts = f2MeasureOnCounts counts
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gevalCore' NMI = gevalCore'' id id id (CC.foldl updateConfusionMatrix M.empty) normalizedMutualInformationFromConfusionMatrix
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gevalCore' NMI _ = gevalCoreWithoutInput id id id (CC.foldl updateConfusionMatrix M.empty) normalizedMutualInformationFromConfusionMatrix
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gevalCore' (LogLossHashed nbOfBits) _ = helper nbOfBits
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gevalCore' (LogLossHashed nbOfBits) =
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-- for LogLossHashed we "salt" each hash with the line number
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-- for LogLossHashed we "salt" each hash with the line number
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gevalCore''' id id (\(lineNo, (t,d)) -> calculateLogLoss nbOfBits lineNo t (parseDistributionWrapper nbOfBits lineNo d)) averageC negate
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where helper nbOfBits expectedFilePath outFilePath =
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gevalCore''' (ParserSpecWithoutInput id id) (\(lineNo, (t,d)) -> calculateLogLoss nbOfBits lineNo t (parseDistributionWrapper nbOfBits lineNo d)) averageC negate (WithoutInput expectedFilePath outFilePath)
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gevalCore' CharMatch inputFilePath = helper inputFilePath
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where
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helper inputFilePath expectedFilePath outFilePath = do
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unlessM (D.doesFileExist inputFilePath) $ throwM $ NoInputFile inputFilePath
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gevalCoreGeneralized (ParserSpecWithInput unpack unpack unpack) step countAgg (fMeasureOnCounts charMatchBeta) (WithInput inputFilePath expectedFilePath outFilePath)
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step (ParsedRecordWithInput inp exp out) = getCharMatchCount inp exp out
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countAgg = CC.foldl countFolder (0, 0, 0)
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parseDistributionWrapper :: Word32 -> Word32 -> Text -> HashedDistribution
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parseDistributionWrapper :: Word32 -> Word32 -> Text -> HashedDistribution
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parseDistributionWrapper nbOfBits seed distroSpec = case parseDistribution nbOfBits seed distroSpec of
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parseDistributionWrapper nbOfBits seed distroSpec = case parseDistribution nbOfBits seed distroSpec of
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@ -257,31 +281,84 @@ parseDistributionWrapper nbOfBits seed distroSpec = case parseDistribution nbOfB
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data SourceItem a = Got a | Done
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data SourceItem a = Got a | Done
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skipLineNumber :: ((a, b) -> c) -> ((Word32, (a, b)) -> c)
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skipLineNumber :: (x -> c) -> ((Word32, x) -> c)
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skipLineNumber fun = fun . snd
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skipLineNumber fun = fun . snd
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gevalCore'' :: (Text -> a) -> (Text -> b) -> ((a, b) -> c) -> (Sink c (ResourceT IO) d) -> (d -> Double) -> String -> String -> IO (MetricValue)
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gevalCoreWithoutInput :: (Text -> a) -> (Text -> b) -> ((a, b) -> c) -> (Sink c (ResourceT IO) d) -> (d -> Double) -> String -> String -> IO (MetricValue)
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gevalCore'' expParser outParser itemStep aggregator finalStep expectedFilePath outFilePath =
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gevalCoreWithoutInput expParser outParser itemStep aggregator finalStep expectedFilePath outFilePath =
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gevalCore''' expParser outParser (skipLineNumber itemStep) aggregator finalStep expectedFilePath outFilePath
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gevalCoreGeneralized (ParserSpecWithoutInput expParser outParser) (trans itemStep) aggregator finalStep (WithoutInput expectedFilePath outFilePath)
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where
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trans :: ((a, b) -> c) -> ParsedRecord (WithoutInput a b) -> c
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trans step (ParsedRecordWithoutInput x y) = step (x, y)
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gevalCore''' :: (Text -> a) -> (Text -> b) -> ((Word32, (a, b)) -> c) -> (Sink c (ResourceT IO) d) -> (d -> Double) -> String -> String -> IO (MetricValue)
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gevalCore''' :: ParserSpec (WithoutInput a b) -> ((Word32, (a, b)) -> c) -> (Sink c (ResourceT IO) d) -> (d -> Double) -> WithoutInput a b -> IO (MetricValue)
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gevalCore''' expParser outParser itemStep aggregator finalStep expectedFilePath outFilePath = do
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gevalCore''' parserSpec itemStep aggregator finalStep context =
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gevalCoreGeneralized' parserSpec (trans itemStep) aggregator finalStep context
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where
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trans :: ((Word32, (a, b)) -> c) -> (Word32, ParsedRecord (WithoutInput a b)) -> c
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trans step (n, ParsedRecordWithoutInput x y) = step (n, (x, y))
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gevalCoreGeneralized :: EvaluationContext ctxt => ParserSpec ctxt -> (ParsedRecord ctxt -> c) -> (Sink c (ResourceT IO) d) -> (d -> Double) -> ctxt -> IO (MetricValue)
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gevalCoreGeneralized parserSpec itemStep aggregator finalStep context =
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gevalCoreGeneralized' parserSpec (skipLineNumber itemStep) aggregator finalStep context
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gevalCoreGeneralized' :: EvaluationContext ctxt => ParserSpec ctxt -> ((Word32, ParsedRecord ctxt) -> c) -> (Sink c (ResourceT IO) d) -> (d -> Double) -> ctxt -> IO (MetricValue)
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gevalCoreGeneralized' parserSpec itemStep aggregator finalStep context = do
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v <- runResourceT $
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v <- runResourceT $
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(getZipSource $ (,)
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(getZipSource $ (,)
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<$> ZipSource (CL.sourceList [1..])
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<$> ZipSource (CL.sourceList [1..])
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<*> (ZipSource $ getZipSource $ (,)
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<*> (ZipSource $ recordSource context parserSpec))
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<$> ZipSource (items expectedFilePath expParser)
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<*> ZipSource (items outFilePath outParser)))
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$$ (CL.map (checkStep itemStep)
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$$ (CL.map (checkStep itemStep)
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=$= CL.catMaybes
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=$= CL.catMaybes
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=$ aggregator)
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=$ aggregator)
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return $ finalStep v
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return $ finalStep v
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checkStep :: ((Word32, (a, b)) -> c) -> (Word32, (SourceItem a, SourceItem b)) -> Maybe c
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class EvaluationContext ctxt where
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checkStep step (lineNo, (Got expectedItem, Got outItem)) = Just $ step (lineNo, (expectedItem, outItem))
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data ParserSpec ctxt :: *
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checkStep _ (_, (Got _, Done)) = throw TooFewLines
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data WrappedParsedRecord ctxt :: *
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checkStep _ (_, (Done, Got _)) = throw TooManyLines
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data ParsedRecord ctxt :: *
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checkStep _ (_, (Done, Done)) = Nothing
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recordSource :: MonadResource m0 => ctxt -> ParserSpec ctxt -> Source m0 (WrappedParsedRecord ctxt)
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getExpectedFilePath :: ctxt -> String
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getOutFilePath :: ctxt -> String
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checkStep :: ((Word32, ParsedRecord ctxt) -> c) -> (Word32, WrappedParsedRecord ctxt) -> Maybe c
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data WithoutInput e o = WithoutInput String String
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instance EvaluationContext (WithoutInput e o) where
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data ParserSpec (WithoutInput e o) = ParserSpecWithoutInput (Text -> e) (Text -> o)
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data WrappedParsedRecord (WithoutInput e o) = WrappedParsedRecordWithoutInput (SourceItem e) (SourceItem o)
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data ParsedRecord (WithoutInput e o) = ParsedRecordWithoutInput e o
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getExpectedFilePath (WithoutInput expectedFilePath _) = expectedFilePath
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getOutFilePath (WithoutInput _ outFilePath) = outFilePath
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recordSource (WithoutInput expectedFilePath outFilePath) (ParserSpecWithoutInput expParser outParser) = getZipSource $ WrappedParsedRecordWithoutInput
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<$> ZipSource (items expectedFilePath expParser)
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<*> ZipSource (items outFilePath outParser)
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checkStep step (lineNo, WrappedParsedRecordWithoutInput (Got expectedItem) (Got outItem)) = Just $ step (lineNo, ParsedRecordWithoutInput expectedItem outItem)
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checkStep _ (_, WrappedParsedRecordWithoutInput (Got _) Done) = throw TooFewLines
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checkStep _ (_, WrappedParsedRecordWithoutInput Done (Got _)) = throw TooManyLines
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checkStep _ (_, WrappedParsedRecordWithoutInput Done Done) = Nothing
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data WithInput i e o = WithInput String String String
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getInputFilePath (WithInput inputFilePath _ _) = inputFilePath
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instance EvaluationContext (WithInput i e o) where
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data ParserSpec (WithInput i e o) = ParserSpecWithInput (Text -> i) (Text -> e) (Text -> o)
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data WrappedParsedRecord (WithInput i e o) = WrappedParsedRecordWithInput (SourceItem i) (SourceItem e) (SourceItem o)
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data ParsedRecord (WithInput i e o) = ParsedRecordWithInput i e o
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getExpectedFilePath (WithInput _ expectedFilePath _) = expectedFilePath
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getOutFilePath (WithInput _ _ outFilePath) = outFilePath
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recordSource (WithInput inputFilePath expectedFilePath outFilePath) (ParserSpecWithInput inpParser expParser outParser) = getZipSource $ (\x (y,z) -> WrappedParsedRecordWithInput x y z)
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<$> ZipSource (items inputFilePath inpParser) <*> (ZipSource $ getZipSource $ (,)
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<$> ZipSource (items expectedFilePath expParser)
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<*> ZipSource (items outFilePath outParser))
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checkStep step (lineNo, WrappedParsedRecordWithInput (Got inputItem) (Got expectedItem) (Got outItem)) = Just $ step (lineNo, ParsedRecordWithInput inputItem expectedItem outItem)
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checkStep _ (_, WrappedParsedRecordWithInput _ (Got _) Done) = throw TooFewLines
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checkStep _ (_, WrappedParsedRecordWithInput _ Done (Got _)) = throw TooManyLines
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checkStep _ (_, WrappedParsedRecordWithInput Done (Got _) (Got _)) = throw TooFewLinesInInput
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checkStep _ (_, WrappedParsedRecordWithInput (Got _) Done Done) = throw TooManyLinesInInput
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checkStep _ (_, WrappedParsedRecordWithInput Done Done Done) = Nothing
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