Fix line-by-line mode not working for BIO-F1

src/GEval/Core.hs

@@ -162,9 +162,9 @@ isPreprocessable CharMatch = True
 isPreprocessable MAP = False
 isPreprocessable LogLoss = False
 isPreprocessable Likelihood = False
-isPreprocessable BIOF1 = False
-isPreprocessable BIOF1Labels = False
-isPreprocessable BIOWeightedF1 = False
+isPreprocessable BIOF1 = True
+isPreprocessable BIOF1Labels = True
+isPreprocessable BIOWeightedF1 = True
 isPreprocessable TokenAccuracy = True
 isPreprocessable SegmentAccuracy = True
 isPreprocessable MAE = False

test/Spec.hs

@@ -382,6 +382,8 @@ main = hspec $ do
   describe "Preprocessing operations" $ do
     it "F1 with preprocessing" $ do
       runGEvalTest "f1-with-preprocessing" `shouldReturnAlmost` 0.57142857142857
+    it "BIO-F1 with preprocessing" $ do
+      runGEvalTest "bio-f1-flags" `shouldReturnAlmost` 0.75
     it "Regexp substition" $ do
       runGEvalTest "accuracy-with-flags" `shouldReturnAlmost` 0.8
     let sampleChallenge = GEvalSpecification
@@ -895,7 +897,7 @@ extractVal (Left result) = do
 
 runGEvalTest testName = do
   r <- runGEvalTestExtraOptions [] testName
---  _ <- runGEvalTestExtraOptions ["--line-by-line", "-i", "expected.tsv"] testName
+  --  _ <- runGEvalTestExtraOptions ["--line-by-line", "-i", "expected.tsv"] testName
   return r
 
 runGEvalTestExtraOptions extraOptions testName = (runGEval ([

test/bio-f1-flags/bio-f1-flags-solution/test-A/out.tsv

@@ -0,0 +1,3 @@
+foo bar
+bar
+foo

test/bio-f1-flags/bio-f1-flags/config.txt

@@ -0,0 +1 @@
+--metric BIO-F1:s<foo><B-FOO>s<bar><B-BAR>

test/bio-f1-flags/bio-f1-flags/test-A/expected.tsv

@@ -0,0 +1,3 @@
+foo bar
+foo
+foo