Change HashMap to Map, clean up
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@ -22,7 +22,7 @@ import System.Exit
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import System.Process
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import qualified Data.Set as S
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import qualified Data.HashMap.Strict as H
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import qualified Data.Map.Strict as M
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import Handler.Shared (gitPath)
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@ -31,7 +31,7 @@ import "Glob" System.FilePath.Glob as G
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data ExtractionOptions = ExtractionOptions {
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extractionOptionsDescription :: Maybe Text,
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extractionOptionsTags :: Maybe Text,
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extractionOptionsGeneralParams :: Maybe (H.HashMap Text Text),
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extractionOptionsGeneralParams :: Maybe (M.Map Text Text),
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extractionOptionsUnwantedParams :: Maybe [Text],
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extractionOptionsParamFiles :: Maybe [String],
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extractionOptionsMLRunPath :: Maybe FilePath
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@ -59,7 +59,7 @@ instance Default ExtractionOptions where
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data GonitoMetadata = GonitoMetadata {
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gonitoMetadataDescription :: Text,
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gonitoMetadataTags :: S.Set Text,
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gonitoMetadataGeneralParams :: H.HashMap Text Text
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gonitoMetadataGeneralParams :: M.Map Text Text
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}
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deriving (Eq, Show)
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@ -75,9 +75,9 @@ combineExtractionOptions Nothing options = options
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combineExtractionOptions (Just otherOptions) options = ExtractionOptions {
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extractionOptionsDescription = combineWithT extractionOptionsDescription,
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extractionOptionsTags = combineWithT extractionOptionsTags,
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extractionOptionsGeneralParams = Just $ (fromMaybe H.empty $ extractionOptionsGeneralParams options)
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`H.union`
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(fromMaybe H.empty $ extractionOptionsGeneralParams otherOptions),
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extractionOptionsGeneralParams = Just $ (fromMaybe M.empty $ extractionOptionsGeneralParams options)
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`M.union`
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(fromMaybe M.empty $ extractionOptionsGeneralParams otherOptions),
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extractionOptionsUnwantedParams = Just $ (fromMaybe [] $ extractionOptionsUnwantedParams options)
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++
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(fromMaybe [] $ extractionOptionsUnwantedParams otherOptions),
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@ -112,17 +112,16 @@ extractMetadataFromRepoDir repoDir formExtractionOptions = do
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let tagsParsed = union commitTagsParsed formTagsParsed
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paramFiles <- case extractionOptionsParamFiles extractionOptions of
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Just paramFilesGlobs -> G.globDir (Import.map G.compile $ traceShowId paramFilesGlobs) repoDir
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Just paramFilesGlobs -> G.globDir (Import.map G.compile paramFilesGlobs) repoDir
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Nothing -> pure []
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params' <- H.unions <$> (mapM parseParamFile
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$ traceShowId
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params' <- M.unions <$> (mapM parseParamFile
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$ Import.filter (/= (repoDir </> gonitoYamlFile))
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$ Import.concat paramFiles)
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let params =
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Import.foldl' (flip H.delete) params' (fromMaybe [] $ extractionOptionsUnwantedParams extractionOptions)
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`H.union`
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fromMaybe H.empty (extractionOptionsGeneralParams extractionOptions)
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Import.foldl' (flip M.delete) params' (fromMaybe [] $ extractionOptionsUnwantedParams extractionOptions)
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`M.union`
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fromMaybe M.empty (extractionOptionsGeneralParams extractionOptions)
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pure $ GonitoMetadata {
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gonitoMetadataDescription = description,
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@ -131,18 +130,18 @@ extractMetadataFromRepoDir repoDir formExtractionOptions = do
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}
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parseParamFile :: FilePath -> IO (H.HashMap Text Text)
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parseParamFile :: FilePath -> IO (M.Map Text Text)
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parseParamFile yamlFile = do
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decoded <- Y.decodeFileEither yamlFile
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return $ case decoded of
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Left _ -> H.empty
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Left _ -> M.empty
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Right h -> enforceTextHash h
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enforceTextHash :: H.HashMap Text Value -> H.HashMap Text Text
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enforceTextHash h = H.fromList
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enforceTextHash :: M.Map Text Value -> M.Map Text Text
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enforceTextHash h = M.fromList
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$ Import.map (\(p, pv) -> (p, strip $ DTE.decodeUtf8 $ Y.encode pv))
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$ H.toList h
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$ M.toList h
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getLastCommitMessage :: FilePath -> IO (Maybe Text)
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getLastCommitMessage repoDir = do
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@ -333,7 +333,7 @@ outsForTest repoDir submissionId testEnt@(Entity _ test) = do
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outFiles <- liftIO $ outFilesForTest repoDir test
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forM outFiles $ \outFile -> do
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theVariant <- getVariant submissionId outFile
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theVariant <- getVariant submissionId M.empty outFile
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outForTest repoDir outFile theVariant testEnt
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-- returns the filename (not file path)
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@ -348,8 +348,8 @@ outFilesForTest repoDir test = do
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Just outF -> return [takeFileName outF]
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Nothing -> return []
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getVariant :: SubmissionId -> FilePath -> Handler VariantId
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getVariant submissionId outFilePath = runDB $ do
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getVariant :: SubmissionId -> M.Map Text Text -> FilePath -> Handler VariantId
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getVariant submissionId generalParams outFilePath = runDB $ do
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let outFile = takeFileName outFilePath
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let name = Data.Text.pack $ dropExtensions outFile
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maybeVariant <- getBy $ UniqueVariantSubmissionName submissionId name
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@ -358,9 +358,11 @@ getVariant submissionId outFilePath = runDB $ do
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Nothing -> do
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vid <- insert $ Variant submissionId name
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let (OutputFileParsed _ paramMap) = parseParamsFromFilePath outFile
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forM_ (M.toList paramMap) $ \(param, val) -> do
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forM_ (M.toList (paramMap `M.union` generalParams)) $ \(param, val) -> do
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_ <- insert $ Parameter vid param val
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return ()
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return vid
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checkOrInsertOut :: Out -> Handler ()
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@ -5,7 +5,7 @@ module Gonito.ExtractMetadataSpec (spec) where
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import Import
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import qualified Data.Set as S
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import qualified Data.HashMap.Strict as H
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import qualified Data.Map.Strict as M
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import Test.Hspec
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import Gonito.ExtractMetadata (extractMetadataFromRepoDir, GonitoMetadata(..), ExtractionOptions(..))
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@ -17,7 +17,7 @@ spec = do
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extractMetadataFromRepoDir "test/fake-git-repos/simple/" def `shouldReturn` GonitoMetadata {
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gonitoMetadataDescription = "Simple solution",
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gonitoMetadataTags = S.fromList ["foo", "simple-solution", "baz"],
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gonitoMetadataGeneralParams = H.empty
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gonitoMetadataGeneralParams = M.empty
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}
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it "simple with some fields from the form" $ do
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extractMetadataFromRepoDir "test/fake-git-repos/simple/" def {
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@ -26,13 +26,13 @@ spec = do
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} `shouldReturn` GonitoMetadata {
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gonitoMetadataDescription = "Other solution",
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gonitoMetadataTags = S.fromList ["foo", "simple-solution", "baz", "other-tag"],
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gonitoMetadataGeneralParams = H.empty
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gonitoMetadataGeneralParams = M.empty
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}
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it "with gonito.yaml" $ do
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extractMetadataFromRepoDir "test/fake-git-repos/with-gonito-yaml/" def `shouldReturn` GonitoMetadata {
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gonitoMetadataDescription = "Test solution",
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gonitoMetadataTags = S.fromList ["zzz", "baz", "simple", "machine-learning"],
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gonitoMetadataGeneralParams = H.fromList [("level", "4"),
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gonitoMetadataGeneralParams = M.fromList [("level", "4"),
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("altitude", "8900.3"),
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("q", "10.4"),
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("style", "bold")]
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@ -1 +1 @@
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Subproject commit e54aa938430ccf03383d84a435183aa8d8f64a8b
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Subproject commit a71de45eacb63081b2b39db09c48ad3d848c2541
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