598 lines
25 KiB
Haskell
598 lines
25 KiB
Haskell
module Handler.ShowChallenge where
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import Import
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import Yesod.Form.Bootstrap3 (BootstrapFormLayout (..), renderBootstrap3, bfs)
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import qualified Data.Text.Lazy as TL
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import Text.Markdown
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import qualified Data.Text as T
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import qualified Data.Map.Strict as M
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import qualified Yesod.Table as Table
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import Handler.Extract
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import Handler.Shared
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import Handler.Runner
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import Handler.Tables
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import Handler.TagUtils
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import Handler.MakePublic
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import Gonito.ExtractMetadata (ExtractionOptions(..),
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extractMetadataFromRepoDir,
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GonitoMetadata(..),
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parseTags,
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Link(..))
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import qualified Text.Read as TR
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import GEval.Core
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import GEval.OptionsParser
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import GEval.ParseParams (parseParamsFromFilePath, OutputFileParsed(..))
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import PersistSHA1
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import Options.Applicative
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import System.IO (readFile)
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import System.FilePath (takeFileName, dropExtensions)
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import Data.Text (pack, unpack)
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import Data.Conduit.SmartSource
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import Data.List (nub)
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getShowChallengeR :: Text -> Handler Html
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getShowChallengeR name = do
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app <- getYesod
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let leaderboardStyle = appLeaderboardStyle $ appSettings app
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(Entity challengeId challenge) <- runDB $ getBy404 $ UniqueName name
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Just repo <- runDB $ get $ challengePublicRepo challenge
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(leaderboard, (entries, tests)) <- getLeaderboardEntries leaderboardStyle challengeId
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mauth <- maybeAuth
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let muserId = (\(Entity uid _) -> uid) <$> mauth
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let params = getNumericalParams entries
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let scheme = appRepoScheme $ appSettings app
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challengeRepo <- runDB $ get404 $ challengePublicRepo challenge
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challengeLayout True challenge (showChallengeWidget muserId
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challenge scheme
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challengeRepo
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repo
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leaderboard
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params
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tests)
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getChallengeReadmeR :: Text -> Handler Html
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getChallengeReadmeR name = do
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(Entity _ challenge) <- runDB $ getBy404 $ UniqueName name
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readme <- challengeReadme name
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challengeLayout False challenge $ toWidget readme
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challengeReadme :: Text -> HandlerFor App Html
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challengeReadme name = do
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(Entity _ challenge) <- runDB $ getBy404 $ UniqueName name
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let repoId = challengePublicRepo challenge
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repoDir <- getRepoDir repoId
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let readmeFilePath = repoDir </> readmeFile
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contents <- liftIO $ System.IO.readFile readmeFilePath
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return $ markdown def $ TL.pack contents
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showChallengeWidget :: Maybe UserId
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-> Challenge
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-> RepoScheme
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-> Repo
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-> Repo
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-> [LeaderboardEntry]
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-> [Text]
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-> [Entity Test]
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-> WidgetFor App ()
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showChallengeWidget muserId
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challenge
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scheme
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challengeRepo
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repo
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leaderboard
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params
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tests
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= $(widgetFile "show-challenge")
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where leaderboardWithRanks = zip [1..] leaderboard
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maybeRepoLink = getRepoLink repo
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delta = Number 4
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higherTheBetterArray = getIsHigherTheBetterArray $ map entityVal tests
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getRepoLink :: Repo -> Maybe Text
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getRepoLink repo
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| sitePrefix `isPrefixOf` url = Just $ (browsableGitRepo bareRepoName) ++ "/" ++ (repoBranch repo)
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| otherwise = Nothing
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where sitePrefix = "git://gonito.net/" :: Text
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sitePrefixLen = length sitePrefix
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url = repoUrl repo
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bareRepoName = drop sitePrefixLen url
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getChallengeHowToR :: Text -> Handler Html
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getChallengeHowToR name = do
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(Entity _ challenge) <- runDB $ getBy404 $ UniqueName name
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maybeUser <- maybeAuth
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app <- getYesod
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let settings = appSettings app
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let publicRepoId = challengePublicRepo challenge
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repo <- runDB $ get404 publicRepoId
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case maybeUser of
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Just (Entity userId user) -> do
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enableTriggerToken userId (userTriggerToken user)
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Nothing -> return ()
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let mToken = case maybeUser of
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Just (Entity _ user) -> userTriggerToken user
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Nothing -> Nothing
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let isIDSet = case maybeUser of
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Just (Entity _ user) -> isJust $ userLocalId user
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Nothing -> False
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isSSHUploaded <- case maybeUser of
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Just (Entity userId _) -> do
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ukeys <- runDB $ selectList [PublicKeyUser ==. userId] []
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return $ not (null ukeys)
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Nothing -> return False
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challengeLayout False challenge (challengeHowTo
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challenge
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settings
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repo
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(idToBeShown challenge maybeUser)
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isIDSet
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isSSHUploaded
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mToken)
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idToBeShown :: p -> Maybe (Entity User) -> Text
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idToBeShown _ maybeUser =
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case maybeUser of
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Just user -> case userLocalId $ entityVal user of
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Just localId -> localId
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Nothing -> defaultIdToBe
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Nothing -> defaultIdToBe
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where defaultIdToBe = "YOURID" :: Text
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defaultRepo :: RepoScheme -> Challenge -> Repo -> Maybe (Entity User) -> Text
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defaultRepo SelfHosted challenge _ maybeUser = "ssh://gitolite@gonito.net/" ++ (idToBeShown challenge maybeUser) ++ "/" ++ (challengeName challenge)
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defaultRepo Branches _ repo _ = repoUrl repo
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defaultBranch :: IsString a => RepoScheme -> Maybe a
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defaultBranch SelfHosted = Just "master"
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defaultBranch Branches = Nothing
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challengeHowTo challenge settings repo shownId isIDSet isSSHUploaded mToken = $(widgetFile "challenge-how-to")
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where myBranch = case appRepoScheme settings of
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SelfHosted -> "master" :: Text
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_ -> "my-brilliant-branch"
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getChallengeSubmissionR :: Text -> Handler Html
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getChallengeSubmissionR name = do
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(Entity _ challenge) <- runDB $ getBy404 $ UniqueName name
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maybeUser <- maybeAuth
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Just repo <- runDB $ get $ challengePublicRepo challenge
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app <- getYesod
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let scheme = appRepoScheme $ appSettings app
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(formWidget, formEnctype) <- generateFormPost $ submissionForm (Just $ defaultRepo scheme challenge repo maybeUser) (defaultBranch scheme) (repoGitAnnexRemote repo)
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challengeLayout True challenge $ challengeSubmissionWidget formWidget formEnctype challenge
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postChallengeSubmissionR :: Text -> Handler TypedContent
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postChallengeSubmissionR name = do
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(Entity challengeId _) <- runDB $ getBy404 $ UniqueName name
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((result, _), _) <- runFormPost $ submissionForm Nothing Nothing Nothing
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let submissionData = case result of
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FormSuccess res -> Just res
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_ -> Nothing
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Just (mDescription, mTags, submissionUrl, submissionBranch, submissionGitAnnexRemote) = submissionData
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userId <- requireAuthId
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runViewProgress $ doCreateSubmission userId challengeId mDescription mTags RepoSpec {
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repoSpecUrl=submissionUrl,
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repoSpecBranch=submissionBranch,
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repoSpecGitAnnexRemote=submissionGitAnnexRemote}
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postTriggerLocallyR :: Handler TypedContent
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postTriggerLocallyR = do
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(Just challengeName) <- lookupPostParam "challenge"
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(Just localId) <- lookupPostParam "user"
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mBranch <- lookupPostParam "branch"
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[Entity userId _] <- runDB $ selectList [UserLocalId ==. Just localId] []
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let localRepo = gitServer ++ localId ++ "/" ++ challengeName
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trigger userId challengeName localRepo mBranch
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postTriggerRemotelyR :: Handler TypedContent
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postTriggerRemotelyR = do
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(Just challengeName) <- lookupPostParam "challenge"
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(Just url) <- lookupPostParam "url"
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(Just token) <- lookupPostParam "token"
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mBranch <- lookupPostParam "branch"
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[Entity userId _] <- runDB $ selectList [UserTriggerToken ==. Just token] []
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trigger userId challengeName url mBranch
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trigger :: UserId -> Text -> Text -> Maybe Text -> Handler TypedContent
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trigger userId challengeName url mBranch = do
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let branch = fromMaybe "master" mBranch
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mChallengeEnt <- runDB $ getBy $ UniqueName challengeName
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case mChallengeEnt of
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Just (Entity challengeId _) -> runOpenViewProgress $ doCreateSubmission userId challengeId
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Nothing Nothing
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RepoSpec {repoSpecUrl=url,
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repoSpecBranch=branch,
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repoSpecGitAnnexRemote=Nothing}
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Nothing -> return $ toTypedContent (("Unknown challenge `" ++ (Data.Text.unpack challengeName) ++ "`. Cannot be triggered, must be submitted manually at Gonito.net!\n") :: String)
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doCreateSubmission :: UserId -> Key Challenge -> Maybe Text -> Maybe Text -> RepoSpec -> Channel -> Handler ()
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doCreateSubmission userId challengeId mDescription mTags repoSpec chan = do
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maybeRepoKey <- getSubmissionRepo userId challengeId repoSpec chan
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case maybeRepoKey of
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Just repoId -> do
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repo <- runDB $ get404 repoId
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repoDir <- getRepoDir repoId
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gonitoMetadata <- liftIO
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$ extractMetadataFromRepoDir repoDir (ExtractionOptions {
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extractionOptionsDescription = mDescription,
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extractionOptionsTags = Just $ parseTags mTags,
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extractionOptionsGeneralParams = Nothing,
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extractionOptionsUnwantedParams = Nothing,
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extractionOptionsParamFiles = Nothing,
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extractionOptionsMLRunPath = Nothing })
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submissionId <- getSubmission userId
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repoId
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(repoCurrentCommit repo)
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challengeId
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(gonitoMetadataDescription gonitoMetadata)
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chan
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_ <- runDB $ mapM insert $ map (\l -> ExternalLink {
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externalLinkSubmission = submissionId,
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externalLinkTitle = linkTitle l,
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externalLinkUrl = linkUrl l }) $ gonitoMetadataExternalLinks gonitoMetadata
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_ <- getOuts chan submissionId (gonitoMetadataGeneralParams gonitoMetadata)
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currentTagIds <- runDB $ selectList [SubmissionTagSubmission ==. submissionId] []
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runDB $ addTags submissionId (gonitoMetadataTags gonitoMetadata) (
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map (submissionTagTag . entityVal) currentTagIds)
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msg chan "SUBMISSION CREATED"
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app <- getYesod
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if appAutoOpening $ appSettings app
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then
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doMakePublic userId submissionId chan
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else
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return ()
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Nothing -> return ()
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getSubmission :: UserId -> Key Repo -> SHA1 -> Key Challenge -> Text -> Channel -> Handler (Key Submission)
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getSubmission userId repoId commit challengeId description chan = do
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maybeSubmission <- runDB $ getBy $ UniqueSubmissionRepoCommitChallenge repoId commit challengeId
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case maybeSubmission of
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Just (Entity submissionId _) -> do
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msg chan "Submission already there, re-checking"
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return submissionId
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Nothing -> do
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msg chan "Creating new submission"
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time <- liftIO getCurrentTime
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runDB $ insert $ Submission {
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submissionRepo=repoId,
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submissionCommit=commit,
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submissionChallenge=challengeId,
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submissionDescription=description,
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submissionStamp=time,
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submissionSubmitter=userId,
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submissionIsPublic=False,
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submissionIsHidden=Just False }
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getOuts :: Channel -> Key Submission -> M.Map Text Text -> Handler ([Out])
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getOuts chan submissionId generalParams = do
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submission <- runDB $ get404 submissionId
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let challengeId = submissionChallenge submission
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repoDir <- getRepoDir $ submissionRepo submission
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activeTests <- runDB $ selectList [TestChallenge ==. challengeId, TestActive ==. True] []
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outs' <- mapM (outsForTest repoDir submissionId generalParams) activeTests
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let outs = concat outs'
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mapM_ checkOrInsertOut outs
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mapM_ (checkOrInsertEvaluation repoDir chan) outs
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return outs
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outFileName :: FilePath
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outFileName = "out.tsv"
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getOutFilePath :: FilePath -> Test -> FilePath
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getOutFilePath repoDir test = repoDir </> (T.unpack $ testName test) </> outFileName
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findOutFile :: FilePath -> Test -> IO (Maybe FilePath)
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findOutFile repoDir test = do
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let baseOut = getOutFilePath repoDir test
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findFilePossiblyCompressed baseOut
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doesOutExist :: FilePath -> Entity Test -> IO Bool
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doesOutExist repoDir (Entity _ test) = do
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result <- findOutFile repoDir test
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return $ isJust result
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outForTest :: MonadIO m => FilePath -> FilePath -> Key Variant -> Entity Test -> m Out
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outForTest repoDir outF variantId (Entity testId test) = do
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let outPath = repoDir </> (T.unpack $ testName test) </> outF
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checksum <- liftIO $ gatherSHA1ForCollectionOfFiles [outPath]
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return Out {
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outVariant=variantId,
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outTest=testId,
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outChecksum=SHA1 checksum }
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outsForTest :: FilePath -> SubmissionId -> M.Map Text Text -> Entity Test -> HandlerFor App [Out]
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outsForTest repoDir submissionId generalParams testEnt@(Entity _ test) = do
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outFiles <- liftIO $ outFilesForTest repoDir test
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forM outFiles $ \outFile -> do
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theVariant <- getVariant submissionId generalParams outFile
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outForTest repoDir outFile theVariant testEnt
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-- returns the filename (not file path)
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outFilesForTest :: FilePath -> Test -> IO [FilePath]
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outFilesForTest repoDir test = do
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mMultipleOuts <- checkMultipleOutsCore repoDir (Data.Text.unpack $ testName test) "out.tsv"
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case mMultipleOuts of
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Just outFiles -> return $ map takeFileName outFiles
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Nothing -> do
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mOutFile <- findOutFile repoDir test
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case mOutFile of
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Just outF -> return [takeFileName outF]
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Nothing -> return []
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getVariant :: SubmissionId -> M.Map Text Text -> FilePath -> Handler VariantId
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getVariant submissionId generalParams outFilePath = runDB $ do
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let outFile = takeFileName outFilePath
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let name = Data.Text.pack $ dropExtensions outFile
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maybeVariant <- getBy $ UniqueVariantSubmissionName submissionId name
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case maybeVariant of
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Just (Entity vid _) -> return vid
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Nothing -> do
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vid <- insert $ Variant submissionId name
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let (OutputFileParsed _ paramMap) = parseParamsFromFilePath outFile
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forM_ (M.toList (paramMap `M.union` generalParams)) $ \(param, val) -> do
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_ <- insert $ Parameter vid param val
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return ()
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return vid
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checkOrInsertOut :: Out -> Handler ()
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checkOrInsertOut out = do
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maybeOut <- runDB $ getBy $ UniqueOutVariantTestChecksum (outVariant out) (outTest out) (outChecksum out)
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case maybeOut of
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Just _ -> return ()
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Nothing -> (runDB $ insert out) >> return ()
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checkOrInsertEvaluation :: FilePath -> Channel -> Out -> Handler ()
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checkOrInsertEvaluation repoDir chan out = do
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test <- runDB $ get404 $ outTest out
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challenge <- runDB $ get404 $ testChallenge test
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maybeEvaluation <- runDB $ getBy $ UniqueEvaluationTestChecksum (outTest out) (outChecksum out)
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case maybeEvaluation of
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Just (Entity _ evaluation) -> do
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msg chan $ concat ["Already evaluated with score ", (fromMaybe "???" $ formatNonScientifically <$> evaluationScore evaluation)]
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Nothing -> do
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msg chan $ "Start evaluation..."
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challengeDir <- getRepoDir $ challengePrivateRepo challenge
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variant <- runDB $ get404 $ outVariant out
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resultOrException <- liftIO $ rawEval challengeDir (testMetric test) repoDir (testName test) ((T.unpack $ variantName variant) <.> "tsv")
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case resultOrException of
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Right (Left _) -> do
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err chan "Cannot parse options, check the challenge repo"
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Right (Right (_, Just [(_, [result])])) -> do
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msg chan $ concat [ "Evaluated! Score ", (formatNonScientifically result) ]
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time <- liftIO getCurrentTime
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_ <- runDB $ insert $ Evaluation {
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evaluationTest=outTest out,
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evaluationChecksum=outChecksum out,
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evaluationScore=Just result,
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evaluationErrorMessage=Nothing,
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evaluationStamp=time }
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msg chan "Evaluation done"
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Right (Right (_, Just _)) -> do
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err chan "Unexpected multiple results (???)"
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Right (Right (_, Nothing)) -> do
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err chan "Error during the evaluation"
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Left exception -> do
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err chan $ "Evaluation failed: " ++ (T.pack $ show exception)
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rawEval :: FilePath -> Metric -> FilePath -> Text -> FilePath -> IO (Either GEvalException (Either (ParserResult GEvalOptions) (GEvalOptions, Maybe [(SourceSpec, [MetricValue])])))
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rawEval challengeDir metric repoDir name outF = Import.try (runGEvalGetOptions [
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"--alt-metric", (show metric),
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"--expected-directory", challengeDir,
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"--out-directory", repoDir,
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"--out-file", outF,
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"--test-name", (T.unpack name)])
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getSubmissionRepo :: UserId -> Key Challenge -> RepoSpec -> Channel -> Handler (Maybe (Key Repo))
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getSubmissionRepo userId challengeId repoSpec chan = do
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let url = repoSpecUrl repoSpec
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let branch = repoSpecBranch repoSpec
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let gitAnnexRemote = repoSpecGitAnnexRemote repoSpec
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maybeRepo <- runDB $ getBy $ UniqueUrlBranch url branch
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case maybeRepo of
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Just (Entity repoId _) -> do
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msg chan "Repo already there"
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available <- checkRepoAvailibility challengeId repoId chan
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if available
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then
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do
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-- this is not completely right... some other thread
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-- might update this to a different value
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runDB $ update repoId [RepoGitAnnexRemote =. gitAnnexRemote]
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updateStatus <- updateRepo repoId chan
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if updateStatus
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then
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return $ Just repoId
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else
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return Nothing
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else
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return Nothing
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Nothing -> do
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challenge <- runDB $ get404 challengeId
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let repoId = challengePublicRepo challenge
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repo <- runDB $ get404 repoId
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repoDir <- getRepoDir repoId
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let repoCloningSpec = RepoCloningSpec {
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cloningSpecRepo = repoSpec,
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cloningSpecReferenceRepo = RepoSpec {
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repoSpecUrl = (T.pack repoDir),
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repoSpecBranch = (repoBranch repo),
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repoSpecGitAnnexRemote = Nothing
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}
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}
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cloneRepo' userId repoCloningSpec chan
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checkRepoAvailibility :: Key Challenge -> Key Repo -> Channel -> Handler Bool
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checkRepoAvailibility challengeId repoId chan = do
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maybeOtherChallengeId <- runDB $ selectFirst ( [ChallengePublicRepo ==. repoId]
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||. [ChallengePrivateRepo ==. repoId]) []
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case maybeOtherChallengeId of
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Just _ -> do
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err chan "Repository already used as a challenge repo, please use a different repo or a different branch"
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return False
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Nothing -> do
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maybeOtherSubmissionId <- runDB $ selectFirst [SubmissionRepo ==. repoId,
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SubmissionChallenge !=. challengeId] []
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case maybeOtherSubmissionId of
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Just _ -> do
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err chan "Repository already used as a submission repo for a different challenge, please use a different repo or a different branch"
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return False
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Nothing -> return True
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challengeSubmissionWidget formWidget formEnctype challenge = $(widgetFile "challenge-submission")
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submissionForm :: Maybe Text -> Maybe Text -> Maybe Text -> Form (Maybe Text, Maybe Text, Text, Text, Maybe Text)
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submissionForm defaultUrl defBranch defaultGitAnnexRemote = renderBootstrap3 BootstrapBasicForm $ (,,,,)
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<$> aopt textField (fieldWithTooltip MsgSubmissionDescription MsgSubmissionDescriptionTooltip) Nothing
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<*> aopt textField (tagsfs MsgSubmissionTags) Nothing
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<*> areq textField (bfs MsgSubmissionUrl) defaultUrl
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<*> areq textField (bfs MsgSubmissionBranch) defBranch
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<*> aopt textField (bfs MsgSubmissionGitAnnexRemote) (Just defaultGitAnnexRemote)
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getChallengeMySubmissionsR :: Text -> Handler Html
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getChallengeMySubmissionsR name = do
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userId <- requireAuthId
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getChallengeSubmissions (\(Entity _ submission) -> (submissionSubmitter submission == userId)) name
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getChallengeAllSubmissionsR :: Text -> Handler Html
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getChallengeAllSubmissionsR name = getChallengeSubmissions (\_ -> True) name
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getChallengeSubmissions :: ((Entity Submission) -> Bool) -> Text -> Handler Html
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getChallengeSubmissions condition name = do
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Entity challengeId challenge <- runDB $ getBy404 $ UniqueName name
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(evaluationMaps, tests') <- runDB $ getChallengeSubmissionInfos condition challengeId
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let tests = sortBy testComparator tests'
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mauth <- maybeAuth
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let muserId = (\(Entity uid _) -> uid) <$> mauth
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app <- getYesod
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let scheme = appRepoScheme $ appSettings app
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challengeRepo <- runDB $ get404 $ challengePublicRepo challenge
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let params = getNumericalParams evaluationMaps
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challengeLayout True challenge (challengeAllSubmissionsWidget muserId
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challenge
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scheme
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challengeRepo
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evaluationMaps
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tests
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params)
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getNumericalParams :: [TableEntry] -> [Text]
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getNumericalParams entries = filter (isNumericalParam entries) $ getAllParams entries
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isNumericalParam :: [TableEntry] -> Text -> Bool
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isNumericalParam entries param =
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all doesTextRepresentNumber
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$ concat
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$ map ((map parameterValue)
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. (filter (\p -> parameterName p == param))
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. (map entityVal)
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. tableEntryParams) entries
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doesTextRepresentNumber :: Text -> Bool
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doesTextRepresentNumber t = isJust $ ((TR.readMaybe $ T.unpack t) :: Maybe Double)
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getAllParams :: [TableEntry] -> [Text]
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getAllParams entries = sort
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$ nub
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$ concat
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$ map (\entry -> map (parameterName . entityVal) (tableEntryParams entry)) entries
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challengeAllSubmissionsWidget :: Maybe UserId
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-> Challenge
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-> RepoScheme
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-> Repo
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-> [TableEntry]
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-> [Entity Test]
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-> [Text]
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-> WidgetFor App ()
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challengeAllSubmissionsWidget muserId challenge scheme challengeRepo submissions tests params =
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$(widgetFile "challenge-all-submissions")
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where delta = Number 4
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higherTheBetterArray = getIsHigherTheBetterArray $ map entityVal tests
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paramGraphsWidget :: Challenge -> [Entity Test] -> [Text] -> WidgetFor App ()
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paramGraphsWidget challenge tests params = $(widgetFile "param-graphs")
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where chartJSs = getChartJss challenge selectedTests params
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selectedTests = reverse $ getMainTests tests
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getChartJss :: Challenge -> [Entity Test] -> [Text] -> JavascriptUrl (Route App)
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getChartJss challenge tests params =
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mconcat $ [(getChartJs challenge test param) | test <- tests, param <- params]
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getChartJs :: Challenge
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-> Entity Test
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-> Text
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-> JavascriptUrl (Route App)
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getChartJs challenge (Entity testId test) param = [julius|
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$.getJSON("@{ChallengeParamGraphDataR (challengeName challenge) testId param}", function(data) {
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c3.generate({
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bindto: '#chart-' + #{toJSON param} + '-' + #{toJSON testId},
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data: data,
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axis: {
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x: {
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label: #{toJSON param},
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},
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y: {
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label: #{toJSON testFormatted},
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}
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}
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}) });
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|]
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where testFormatted = formatTest test
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challengeLayout :: Bool -> Challenge -> WidgetFor App () -> HandlerFor App Html
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challengeLayout withHeader challenge widget = do
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tagsAvailableAsJSON <- runDB $ getAvailableTagsAsJSON
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maybeUser <- maybeAuth
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bc <- widgetToPageContent widget
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defaultLayout $ do
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setTitle "Challenge"
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$(widgetFile "challenge")
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