From cdd82857d5b6dd95c4dd5b6f9fbb6147c0a2ccc3 Mon Sep 17 00:00:00 2001
From: Filip Gralinski <filipg@amu.edu.pl>
Date: Wed, 9 Nov 2022 16:55:32 +0100
Subject: [PATCH] Handle plots/ subdir, fix spaces in names

---
 {{cookiecutter.paper_repo_name}}/helpers/flatten-structure.pl  | 2 +-
 .../helpers/prepare-arxiv-package.sh                           | 3 ++-
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/{{cookiecutter.paper_repo_name}}/helpers/flatten-structure.pl b/{{cookiecutter.paper_repo_name}}/helpers/flatten-structure.pl
index 356d2a5..1c46fd0 100755
--- a/{{cookiecutter.paper_repo_name}}/helpers/flatten-structure.pl
+++ b/{{cookiecutter.paper_repo_name}}/helpers/flatten-structure.pl
@@ -8,7 +8,7 @@ use strict;
 binmode(STDIN, ':utf8');
 binmode(STDOUT, ':utf8');
 
-my $subdir_regexp = qr{(?:figures|images)};
+my $subdir_regexp = qr{(?:figures|images|plots)};
 
 sub fix_subdirs {
     my ($p) = @_;
diff --git a/{{cookiecutter.paper_repo_name}}/helpers/prepare-arxiv-package.sh b/{{cookiecutter.paper_repo_name}}/helpers/prepare-arxiv-package.sh
index 158c586..e587de0 100755
--- a/{{cookiecutter.paper_repo_name}}/helpers/prepare-arxiv-package.sh
+++ b/{{cookiecutter.paper_repo_name}}/helpers/prepare-arxiv-package.sh
@@ -49,7 +49,7 @@ handle_subdir()
             then
                 perl helpers/flatten-structure.pl < "$f" > "$dst"
             else
-                cp $f $dst
+                cp "$f" "$dst"
             fi
         done
     fi
@@ -57,6 +57,7 @@ handle_subdir()
 
 handle_subdir images
 handle_subdir figures
+handle_subdir plots
 handle_subdir scores
 handle_subdir inputs