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ium
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Tomasz 2023-04-20 12:13:19 +02:00
parent 0d2ac2309a
commit b079dbb978
3 changed files with 96 additions and 137 deletions

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@ -248,7 +248,7 @@
}
},
"source": [
"Przykładowy Dockerfile:\n",
"### Przykładowy Dockerfile:\n",
"```Dockerfile\n",
"# Nasz obraz będzie dzidziczył z obrazu Ubuntu w wersji latest\n",
"FROM ubuntu:latest\n",

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@ -115,7 +115,7 @@
},
{
"cell_type": "code",
"execution_count": 2,
"execution_count": 3,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -126,40 +126,18 @@
"name": "stdout",
"output_type": "stream",
"text": [
"Collecting sacred\n",
" Downloading sacred-0.8.4-py2.py3-none-any.whl (107 kB)\n",
"\u001b[K |████████████████████████████████| 107 kB 637 kB/s eta 0:00:01\n",
"\u001b[?25hCollecting py-cpuinfo>=4.0\n",
" Downloading py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)\n",
"Collecting GitPython\n",
" Downloading GitPython-3.1.31-py3-none-any.whl (184 kB)\n",
"\u001b[K |████████████████████████████████| 184 kB 617 kB/s eta 0:00:01\n",
"\u001b[?25hCollecting munch<3.0,>=2.5\n",
" Downloading munch-2.5.0-py2.py3-none-any.whl (10 kB)\n",
"Collecting wrapt<2.0,>=1.0\n",
" Downloading wrapt-1.15.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (78 kB)\n",
"\u001b[K |████████████████████████████████| 78 kB 508 kB/s eta 0:00:01\n",
"\u001b[?25hCollecting colorama>=0.4\n",
" Downloading colorama-0.4.6-py2.py3-none-any.whl (25 kB)\n",
"Collecting docopt<1.0,>=0.3\n",
" Downloading docopt-0.6.2.tar.gz (25 kB)\n",
"Collecting jsonpickle>=1.2\n",
" Downloading jsonpickle-3.0.1-py2.py3-none-any.whl (40 kB)\n",
"\u001b[K |████████████████████████████████| 40 kB 518 kB/s eta 0:00:01\n",
"\u001b[?25hRequirement already satisfied: packaging>=18.0 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (23.0)\n",
"Requirement already satisfied: sacred in /home/tomek/miniconda3/lib/python3.9/site-packages (0.8.4)\n",
"Requirement already satisfied: jsonpickle>=1.2 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (3.0.1)\n",
"Requirement already satisfied: colorama>=0.4 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (0.4.6)\n",
"Requirement already satisfied: GitPython in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (3.1.31)\n",
"Requirement already satisfied: py-cpuinfo>=4.0 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (9.0.0)\n",
"Requirement already satisfied: wrapt<2.0,>=1.0 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (1.15.0)\n",
"Requirement already satisfied: munch<3.0,>=2.5 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (2.5.0)\n",
"Requirement already satisfied: docopt<1.0,>=0.3 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (0.6.2)\n",
"Requirement already satisfied: packaging>=18.0 in /home/tomek/miniconda3/lib/python3.9/site-packages (from sacred) (23.0)\n",
"Requirement already satisfied: six in /home/tomek/miniconda3/lib/python3.9/site-packages (from munch<3.0,>=2.5->sacred) (1.16.0)\n",
"Collecting gitdb<5,>=4.0.1\n",
" Downloading gitdb-4.0.10-py3-none-any.whl (62 kB)\n",
"\u001b[K |████████████████████████████████| 62 kB 430 kB/s eta 0:00:01\n",
"\u001b[?25hCollecting smmap<6,>=3.0.1\n",
" Using cached smmap-5.0.0-py3-none-any.whl (24 kB)\n",
"Building wheels for collected packages: docopt\n",
" Building wheel for docopt (setup.py) ... \u001b[?25ldone\n",
"\u001b[?25h Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13723 sha256=9ae6354916cc7817db186faf89036b67a6562e0391c04e901e72698d9ce5bd8b\n",
" Stored in directory: /home/tomek/.cache/pip/wheels/70/4a/46/1309fc853b8d395e60bafaf1b6df7845bdd82c95fd59dd8d2b\n",
"Successfully built docopt\n",
"Installing collected packages: smmap, gitdb, wrapt, py-cpuinfo, munch, jsonpickle, GitPython, docopt, colorama, sacred\n",
"Successfully installed GitPython-3.1.31 colorama-0.4.6 docopt-0.6.2 gitdb-4.0.10 jsonpickle-3.0.1 munch-2.5.0 py-cpuinfo-9.0.0 sacred-0.8.4 smmap-5.0.0 wrapt-1.15.0\n"
"Requirement already satisfied: gitdb<5,>=4.0.1 in /home/tomek/miniconda3/lib/python3.9/site-packages (from GitPython->sacred) (4.0.10)\n",
"Requirement already satisfied: smmap<6,>=3.0.1 in /home/tomek/miniconda3/lib/python3.9/site-packages (from gitdb<5,>=4.0.1->GitPython->sacred) (5.0.0)\n"
]
}
],
@ -208,7 +186,7 @@
},
{
"cell_type": "code",
"execution_count": 14,
"execution_count": 5,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -262,7 +240,7 @@
},
{
"cell_type": "code",
"execution_count": 15,
"execution_count": 6,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -300,6 +278,7 @@
" -f --force Disable warnings about suspicious changes for\r\n",
" this run.\r\n",
" -h --help Print this help message and exit.\r\n",
" -i VALUE --id=VALUE Set the id for this run.\r\n",
" -l VALUE --loglevel=VALUE Set the LogLevel. Loglevel either as 0 - 50 or\r\n",
" as string: DEBUG(10), INFO(20), WARNING(30),\r\n",
" ERROR(40), CRITICAL(50)\r\n",
@ -378,7 +357,7 @@
},
{
"cell_type": "code",
"execution_count": 5,
"execution_count": 8,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -407,7 +386,7 @@
},
{
"cell_type": "code",
"execution_count": 6,
"execution_count": 9,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -434,10 +413,10 @@
{
"data": {
"text/plain": [
"<sacred.run.Run at 0x7f641e9ddba8>"
"<sacred.run.Run at 0x7f89cc3175b0>"
]
},
"execution_count": 6,
"execution_count": 9,
"metadata": {},
"output_type": "execute_result"
}
@ -459,7 +438,7 @@
},
{
"cell_type": "code",
"execution_count": 19,
"execution_count": 10,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -472,7 +451,7 @@
"{'recipient': 'Świecie', 'greeting': 'Witaj', 'message': 'Witaj Świecie!'}"
]
},
"execution_count": 19,
"execution_count": 10,
"metadata": {},
"output_type": "execute_result"
}
@ -521,7 +500,7 @@
},
{
"cell_type": "code",
"execution_count": 21,
"execution_count": 14,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -546,7 +525,7 @@
},
{
"cell_type": "code",
"execution_count": 24,
"execution_count": 15,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -563,7 +542,7 @@
" greeting = 'Witaj'\r\n",
" message = 'Witaj Świecie!'\r\n",
" recipient = 'Świecie'\r\n",
" seed = 539001265 \u001b[2m# the random seed for this experiment\u001b[0m\r\n",
" seed = 269258424 \u001b[2m# the random seed for this experiment\u001b[0m\r\n",
"INFO - sacred_scopes - Completed after 0:00:00\r\n"
]
}
@ -574,7 +553,7 @@
},
{
"cell_type": "code",
"execution_count": 90,
"execution_count": 16,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -591,7 +570,7 @@
" greeting = 'Witaj'\r\n",
" message = 'Witaj Przygodo!'\r\n",
"\u001b[34m recipient = 'Przygodo'\u001b[0m\r\n",
" seed = 215765170 \u001b[2m# the random seed for this experiment\u001b[0m\r\n",
" seed = 667939214 \u001b[2m# the random seed for this experiment\u001b[0m\r\n",
"INFO - sacred_scopes - Completed after 0:00:00\r\n"
]
}
@ -613,24 +592,13 @@
},
{
"cell_type": "code",
"execution_count": 7,
"execution_count": null,
"metadata": {
"slideshow": {
"slide_type": "fragment"
}
},
"outputs": [
{
"data": {
"text/plain": [
"{'recipient': 'samotności', 'greeting': 'Żegnaj'}"
]
},
"execution_count": 7,
"metadata": {},
"output_type": "execute_result"
}
],
"outputs": [],
"source": [
"# %load IUM_07/config.json\n",
"{\n",
@ -641,7 +609,7 @@
},
{
"cell_type": "code",
"execution_count": 119,
"execution_count": 20,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -671,7 +639,7 @@
},
{
"cell_type": "code",
"execution_count": 120,
"execution_count": 21,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -702,7 +670,7 @@
},
{
"cell_type": "code",
"execution_count": 121,
"execution_count": 22,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -712,10 +680,10 @@
{
"data": {
"text/plain": [
"{'recipient': 'samotności', 'greeting': 'Żegnaj', 'seed': 529757761}"
"{'recipient': 'samotności', 'greeting': 'Żegnaj', 'seed': 877272352}"
]
},
"execution_count": 121,
"execution_count": 22,
"metadata": {},
"output_type": "execute_result"
}
@ -737,7 +705,7 @@
},
{
"cell_type": "code",
"execution_count": 124,
"execution_count": 23,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -783,7 +751,7 @@
},
{
"cell_type": "code",
"execution_count": 193,
"execution_count": 24,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -811,10 +779,10 @@
{
"data": {
"text/plain": [
"<sacred.run.Run at 0x7f423c40d820>"
"<sacred.run.Run at 0x7f89a0db5550>"
]
},
"execution_count": 193,
"execution_count": 24,
"metadata": {},
"output_type": "execute_result"
}
@ -864,11 +832,24 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 28,
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"total 20\r\n",
"drwsrwsr-t 2 tomek tomek 4096 May 28 2022 1\r\n",
"drwsrwsr-t 2 tomek tomek 4096 May 28 2022 2\r\n",
"drwxr-sr-x 2 tomek tomek 4096 Apr 12 15:11 3\r\n",
"drwxr-sr-x 2 tomek tomek 4096 Apr 12 15:11 _resources\r\n",
"drwsrwsr-t 2 tomek tomek 4096 May 28 2022 _sources\r\n"
]
}
],
"source": [
"!ls -l runs"
"!ls -l my_runs"
]
},
{
@ -906,21 +887,13 @@
},
{
"cell_type": "code",
"execution_count": 9,
"execution_count": null,
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"Overwriting IUM_07/file_observer.py\n"
]
}
],
"outputs": [],
"source": [
"%%writefile IUM_07/file_observer.py\n",
"from sacred.observers import FileStorageObserver\n",
@ -946,7 +919,7 @@
},
{
"cell_type": "code",
"execution_count": 11,
"execution_count": 29,
"metadata": {
"slideshow": {
"slide_type": "fragment"
@ -958,7 +931,7 @@
"output_type": "stream",
"text": [
"INFO - file_observer - Running command 'my_main'\r\n",
"INFO - file_observer - Started run with ID \"1\"\r\n",
"INFO - file_observer - Started run with ID \"4\"\r\n",
"Witaj Świecie!\r\n",
"INFO - file_observer - Completed after 0:00:00\r\n"
]
@ -981,7 +954,7 @@
},
{
"cell_type": "code",
"execution_count": 12,
"execution_count": 30,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -992,9 +965,13 @@
"name": "stdout",
"output_type": "stream",
"text": [
"total 0\r\n",
"drwxr-xr-x 1 tomek tomek 512 Apr 25 09:51 1\r\n",
"drwxr-xr-x 1 tomek tomek 512 Apr 25 09:51 _sources\r\n"
"total 24\r\n",
"drwsrwsr-t 2 tomek tomek 4096 May 28 2022 1\r\n",
"drwsrwsr-t 2 tomek tomek 4096 May 28 2022 2\r\n",
"drwxr-sr-x 2 tomek tomek 4096 Apr 12 15:11 3\r\n",
"drwxr-sr-x 2 tomek tomek 4096 Apr 20 12:09 4\r\n",
"drwxr-sr-x 2 tomek tomek 4096 Apr 12 15:11 _resources\r\n",
"drwsrwsr-t 2 tomek tomek 4096 May 28 2022 _sources\r\n"
]
}
],
@ -1004,25 +981,13 @@
},
{
"cell_type": "code",
"execution_count": 14,
"execution_count": null,
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"total 4\r\n",
"-rw-r--r-- 1 tomek tomek 77 Apr 25 09:51 config.json\r\n",
"-rw-r--r-- 1 tomek tomek 159 Apr 25 09:51 cout.txt\r\n",
"-rw-r--r-- 1 tomek tomek 2 Apr 25 09:51 metrics.json\r\n",
"-rw-r--r-- 1 tomek tomek 1659 Apr 25 09:51 run.json\r\n"
]
}
],
"outputs": [],
"source": [
"!ls -l my_runs/1"
]
@ -1047,7 +1012,7 @@
},
{
"cell_type": "code",
"execution_count": 16,
"execution_count": 31,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -1153,7 +1118,7 @@
},
{
"cell_type": "code",
"execution_count": 170,
"execution_count": 32,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -1165,7 +1130,7 @@
"output_type": "stream",
"text": [
"total 4\r\n",
"-rw-rw-r-- 1 tomek tomek 463 kwi 26 10:21 file_observer_bb0a5c4720d1072b641d23da080696b6.py\r\n"
"-rw-r--r-- 1 tomek tomek 464 May 28 2022 file_observer_cd34a0ef4a32fb0a966eaa01ea6371ad.py\r\n"
]
}
],
@ -1184,8 +1149,7 @@
},
"outputs": [],
"source": [
"## Źródła zostały zapisane\n",
"# %load my_runs/_sources/file_observer_bb0a5c4720d1072b641d23da080696b6.py\n",
"# %load my_runs/_sources/file_observer_cd34a0ef4a32fb0a966eaa01ea6371ad.py\n",
"from sacred.observers import FileStorageObserver\n",
"from sacred import Experiment\n",
"\n",
@ -1204,7 +1168,7 @@
"\n",
"@ex.automain\n",
"def my_main(recipient, greeting):\n",
" print(prepare_message()) ## Nie musimy przekazywać wartości"
" print(prepare_message()) ## Nie musimy przekazywać wartości\n"
]
},
{
@ -1220,7 +1184,7 @@
},
{
"cell_type": "code",
"execution_count": 22,
"execution_count": 36,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -1232,7 +1196,7 @@
"output_type": "stream",
"text": [
"INFO - file_observer - Running command 'my_main'\n",
"INFO - file_observer - Started run with ID \"2\"\n",
"INFO - file_observer - Started run with ID \"5\"\n",
"INFO - file_observer - Completed after 0:00:00\n"
]
},
@ -1275,7 +1239,7 @@
},
{
"cell_type": "code",
"execution_count": 185,
"execution_count": 37,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -1287,13 +1251,13 @@
"output_type": "stream",
"text": [
"{\r\n",
" \"prepare_message_ts\": \"2021-04-26 10:39:59.268539\"\r\n",
" \"prepare_message_ts\": \"2023-04-20 12:10:28.197315\"\r\n",
"}"
]
}
],
"source": [
"cat my_runs/6/info.json"
"cat my_runs/5/info.json"
]
},
{
@ -1326,7 +1290,7 @@
},
{
"cell_type": "code",
"execution_count": 6,
"execution_count": 38,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -1338,7 +1302,7 @@
"output_type": "stream",
"text": [
"INFO - resources - Running command 'my_main'\n",
"INFO - resources - Started run with ID \"3\"\n",
"INFO - resources - Started run with ID \"6\"\n",
"INFO - resources - Completed after 0:00:00\n"
]
},
@ -1353,10 +1317,10 @@
{
"data": {
"text/plain": [
"<sacred.run.Run at 0x7f9b8821cd90>"
"<sacred.run.Run at 0x7f89a0db5a30>"
]
},
"execution_count": 6,
"execution_count": 38,
"metadata": {},
"output_type": "execute_result"
}
@ -1379,7 +1343,7 @@
},
{
"cell_type": "code",
"execution_count": 7,
"execution_count": 39,
"metadata": {},
"outputs": [
{
@ -1397,21 +1361,21 @@
},
{
"cell_type": "code",
"execution_count": 9,
"execution_count": 41,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"my_runs/3/run.json: \"name\": \"resources\",\r\n",
"my_runs/3/run.json: \"resources\": [\r\n",
"my_runs/3/run.json: \"my_runs/_resources/Iris_717820ef0af287ff346c5cabfb4c612c.csv\"\r\n"
"my_runs/6/run.json: \"name\": \"resources\",\r\n",
"my_runs/6/run.json: \"resources\": [\r\n",
"my_runs/6/run.json: \"my_runs/_resources/Iris_717820ef0af287ff346c5cabfb4c612c.csv\"\r\n"
]
}
],
"source": [
"!grep -e \"resources\" -R my_runs/3"
"!grep -e \"resources\" -R my_runs/6"
]
},
{
@ -1431,7 +1395,7 @@
},
{
"cell_type": "code",
"execution_count": 2,
"execution_count": 42,
"metadata": {
"slideshow": {
"slide_type": "slide"
@ -1442,14 +1406,8 @@
"name": "stdout",
"output_type": "stream",
"text": [
"Collecting pymongo\n",
" Downloading pymongo-4.3.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (492 kB)\n",
"\u001b[K |████████████████████████████████| 492 kB 1.2 MB/s eta 0:00:01\n",
"\u001b[?25hCollecting dnspython<3.0.0,>=1.16.0\n",
" Downloading dnspython-2.3.0-py3-none-any.whl (283 kB)\n",
"\u001b[K |████████████████████████████████| 283 kB 1.0 MB/s eta 0:00:01\n",
"\u001b[?25hInstalling collected packages: dnspython, pymongo\n",
"Successfully installed dnspython-2.3.0 pymongo-4.3.3\n"
"Requirement already satisfied: pymongo in /home/tomek/miniconda3/lib/python3.9/site-packages (4.3.3)\r\n",
"Requirement already satisfied: dnspython<3.0.0,>=1.16.0 in /home/tomek/miniconda3/lib/python3.9/site-packages (from pymongo) (2.3.0)\r\n"
]
}
],
@ -1470,7 +1428,8 @@
"name": "stderr",
"output_type": "stream",
"text": [
"INFO - sacred_scopes - Running command 'my_main'\n"
"INFO - sacred_scopes - Running command 'my_main'\n",
"ERROR - sacred_scopes - Failed after 0:00:30!\n"
]
}
],
@ -1479,7 +1438,7 @@
"from sacred import Experiment\n",
"\n",
"ex = Experiment(\"sacred_scopes\", interactive=True)\n",
"ex.observers.append(MongoObserver(url='mongodb://mongo_user:mongo_password@localhost:27017',\n",
"ex.observers.append(MongoObserver(url='mongodb://admin:IUM_2021@172.17.0.1:27017',\n",
" db_name='sacred')) # Tutaj podajemy dane uwierzytelniające i nazwę bazy skonfigurowane w pliku .env podczas uruchamiania bazy.\n",
"# W przypadku instancji na Jenkinsie url będzie wyglądał następująco: mongodb://admin:IUM_2021@172.17.0.1:27017\n",
"@ex.config\n",
@ -1543,7 +1502,7 @@
"import time\n",
"\n",
"ex = Experiment(\"sacred_scopes\", interactive=True)\n",
"ex.observers.append(MongoObserver(url='mongodb://mongo_user:mongo_password@localhost:27017',\n",
"ex.observers.append(MongoObserver(url='mongodb://admin:IUM_2021@172.17.0.1:27017',\n",
" db_name='sacred')) # Tutaj podajemy dane uwierzytelniające i nazwę bazy skonfigurowane w pliku .env podczas uruchamiania bazy.\n",
"# W przypadku instancji na Jenkinsie url będzie wyglądał następująco: mongodb://admin:IUM_2021@172.17.0.1:27017\n",
"@ex.config\n",

View File

@ -12,7 +12,7 @@
"<div class=\"alert alert-block alert-info\">\n",
"<h1> Inżynieria uczenia maszynowego </h1>\n",
"<h2> 8. <i>MLFlow</i> [laboratoria]</h2> \n",
"<h3> Tomasz Ziętkiewicz (2022)</h3>\n",
"<h3> Tomasz Ziętkiewicz (2023)</h3>\n",
"</div>\n",
"\n",
"![Logo 2](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech2.jpg)"