diff --git a/IUM_10.DVC.ipynb b/IUM_10.DVC.ipynb index 2aaf6e6..ad96fe5 100644 --- a/IUM_10.DVC.ipynb +++ b/IUM_10.DVC.ipynb @@ -13,7 +13,7 @@ "
\n", "

Inżynieria uczenia maszynowego

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10. DVC [laboratoria]

\n", - "

Tomasz Ziętkiewicz (2021)

\n", + "

Tomasz Ziętkiewicz (2022)

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\n", "\n", "![Logo 2](https://git.wmi.amu.edu.pl/AITech/Szablon/raw/branch/master/Logotyp_AITech2.jpg)" @@ -47,7 +47,7 @@ "- Umożliwia:\n", " - wersjonowanie danych i modeli. \"Git dla danych i modeli\"\n", " - budowanie potoków (\"pipeline\") definiujących jak budować/trenować/ewaluować modele. \"Makefile dla uczenia maszynowego\"\n", - " - śledzeniem, porównywanie metryk i parametrów\n", + " - śledzenie, porównywanie metryk i parametrów\n", "- ściśle zintegowany z gitem\n", "- działa niezależnie od używanego języka/bibliotek i systemu operacyjnego\n", "- 5-minutowe wprowadzenie: https://www.youtube.com/watch?v=UbL7VUpv1Bs&t=197s" @@ -70,7 +70,7 @@ }, { "cell_type": "code", - "execution_count": 10, + "execution_count": 7, "id": "054c7a11", "metadata": { "slideshow": { @@ -82,215 +82,427 @@ "name": "stdout", "output_type": "stream", "text": [ - "Collecting package metadata (current_repodata.json): done\n", - "Solving environment: failed with initial frozen solve. Retrying with flexible solve.\n", - "Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.\n", - "Collecting package metadata (repodata.json): done\n", - "Solving environment: done\n", - "\n", - "## Package Plan ##\n", - "\n", - " environment location: /home/tomek/miniconda3\n", - "\n", - " added / updated specs:\n", - " - dvc\n", - "\n", - "\n", - "The following packages will be downloaded:\n", - "\n", - " package | build\n", - " ---------------------------|-----------------\n", - " atpublic-1.0 | py_0 7 KB conda-forge\n", - " bzip2-1.0.8 | h7f98852_4 484 KB conda-forge\n", - " cached-property-1.5.2 | hd8ed1ab_1 4 KB conda-forge\n", - " cached_property-1.5.2 | pyha770c72_1 11 KB conda-forge\n", - " colorama-0.4.4 | pyh9f0ad1d_0 18 KB conda-forge\n", - " commonmark-0.9.1 | py_0 46 KB conda-forge\n", - " configobj-5.0.6 | py_0 31 KB conda-forge\n", - " dictdiffer-0.8.1 | pyhd8ed1ab_0 16 KB conda-forge\n", - " diskcache-5.2.1 | pyh44b312d_0 36 KB conda-forge\n", - " distro-1.5.0 | pyh9f0ad1d_0 20 KB conda-forge\n", - " dpath-2.0.1 | py39hf3d152e_0 23 KB conda-forge\n", - " dulwich-0.20.23 | py39h3811e60_0 721 KB conda-forge\n", - " dvc-2.1.0 | py39hf3d152e_0 551 KB conda-forge\n", - " flatten-dict-0.3.0 | pyh9f0ad1d_0 11 KB conda-forge\n", - " flufl.lock-3.2 | py_0 19 KB conda-forge\n", - " fsspec-0.9.0 | pyhd8ed1ab_2 75 KB conda-forge\n", - " ftfy-5.5.1 | py_0 47 KB conda-forge\n", - " funcy-1.16 | pyhd8ed1ab_0 30 KB conda-forge\n", - " future-0.18.2 | py39hf3d152e_3 718 KB conda-forge\n", - " grandalf-0.6 | py_0 42 KB conda-forge\n", - " jsonpath-ng-1.5.2 | pyh9f0ad1d_0 26 KB conda-forge\n", - " libgit2-1.1.0 | h0b03e73_0 693 KB conda-forge\n", - " libssh2-1.9.0 | ha56f1ee_6 226 KB conda-forge\n", - " mailchecker-4.0.7 | pyhd8ed1ab_0 206 KB conda-forge\n", - " nanotime-0.5.2 | py_0 6 KB conda-forge\n", - " networkx-2.5 | py_0 1.2 MB conda-forge\n", - " pathlib2-2.3.5 | py39hf3d152e_3 35 KB conda-forge\n", - " pathspec-0.8.1 | pyhd3deb0d_0 29 KB conda-forge\n", - " pcre2-10.35 | h032f7d1_2 693 KB conda-forge\n", - " phonenumbers-8.10.14 | py_0 1.5 MB conda-forge\n", - " ply-3.11 | py_1 44 KB conda-forge\n", - " pyasn1-0.4.8 | py_0 53 KB conda-forge\n", - " pydot-1.2.4 | py_0 20 KB conda-forge\n", - " pygit2-1.5.0 | py39h3811e60_0 213 KB conda-forge\n", - " pygtrie-2.3.2 | pyh8c360ce_0 24 KB conda-forge\n", - " python-benedict-0.24.0 | pyhd8ed1ab_0 30 KB conda-forge\n", - " python-fsutil-0.5.0 | pyhd8ed1ab_0 13 KB conda-forge\n", - " python-slugify-5.0.2 | pyhd8ed1ab_0 12 KB conda-forge\n", - " rich-10.2.2 | py39hf3d152e_0 337 KB conda-forge\n", - " ruamel.yaml-0.17.4 | py39h3811e60_0 160 KB conda-forge\n", - " ruamel.yaml.clib-0.2.2 | py39h3811e60_2 173 KB conda-forge\n", - " shortuuid-1.0.1 | py39hf3d152e_4 15 KB conda-forge\n", - " shtab-1.3.6 | pyhd8ed1ab_0 15 KB conda-forge\n", - " text-unidecode-1.3 | py_0 68 KB conda-forge\n", - " toml-0.10.2 | pyhd8ed1ab_0 18 KB conda-forge\n", - " unidecode-1.2.0 | pyhd8ed1ab_0 155 KB conda-forge\n", - " voluptuous-0.12.1 | pyhd3deb0d_0 28 KB conda-forge\n", - " zc.lockfile-2.0 | py_0 11 KB conda-forge\n", - " ------------------------------------------------------------\n", - " Total: 8.8 MB\n", - "\n", - "The following NEW packages will be INSTALLED:\n", - "\n", - " _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-1_gnu\n", - " appdirs conda-forge/noarch::appdirs-1.4.4-pyh9f0ad1d_0\n", - " atpublic conda-forge/noarch::atpublic-1.0-py_0\n", - " bzip2 conda-forge/linux-64::bzip2-1.0.8-h7f98852_4\n", - " cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1\n", - " cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1\n", - " colorama conda-forge/noarch::colorama-0.4.4-pyh9f0ad1d_0\n", - " commonmark conda-forge/noarch::commonmark-0.9.1-py_0\n", - " configobj conda-forge/noarch::configobj-5.0.6-py_0\n", - " dictdiffer conda-forge/noarch::dictdiffer-0.8.1-pyhd8ed1ab_0\n", - " diskcache conda-forge/noarch::diskcache-5.2.1-pyh44b312d_0\n", - " distro conda-forge/noarch::distro-1.5.0-pyh9f0ad1d_0\n", - " dpath conda-forge/linux-64::dpath-2.0.1-py39hf3d152e_0\n", - " dulwich conda-forge/linux-64::dulwich-0.20.23-py39h3811e60_0\n", - " dvc conda-forge/linux-64::dvc-2.1.0-py39hf3d152e_0\n", - " flatten-dict conda-forge/noarch::flatten-dict-0.3.0-pyh9f0ad1d_0\n", - " flufl.lock conda-forge/noarch::flufl.lock-3.2-py_0\n", - " fsspec conda-forge/noarch::fsspec-0.9.0-pyhd8ed1ab_2\n", - " ftfy conda-forge/noarch::ftfy-5.5.1-py_0\n", - " funcy conda-forge/noarch::funcy-1.16-pyhd8ed1ab_0\n", - " future conda-forge/linux-64::future-0.18.2-py39hf3d152e_3\n", - " gitdb conda-forge/noarch::gitdb-4.0.7-pyhd8ed1ab_0\n", - " gitpython conda-forge/noarch::gitpython-3.1.17-pyhd8ed1ab_0\n", - " grandalf conda-forge/noarch::grandalf-0.6-py_0\n", - " jsonpath-ng conda-forge/noarch::jsonpath-ng-1.5.2-pyh9f0ad1d_0\n", - " libgit2 conda-forge/linux-64::libgit2-1.1.0-h0b03e73_0\n", - " libgomp conda-forge/linux-64::libgomp-9.3.0-h2828fa1_19\n", - " libssh2 conda-forge/linux-64::libssh2-1.9.0-ha56f1ee_6\n", - " mailchecker conda-forge/noarch::mailchecker-4.0.7-pyhd8ed1ab_0\n", - " nanotime conda-forge/noarch::nanotime-0.5.2-py_0\n", - " networkx conda-forge/noarch::networkx-2.5-py_0\n", - " pathlib2 conda-forge/linux-64::pathlib2-2.3.5-py39hf3d152e_3\n", - " pathspec conda-forge/noarch::pathspec-0.8.1-pyhd3deb0d_0\n", - " pcre2 conda-forge/linux-64::pcre2-10.35-h032f7d1_2\n", - " phonenumbers conda-forge/noarch::phonenumbers-8.10.14-py_0\n", - " pip conda-forge/noarch::pip-21.1.2-pyhd8ed1ab_0\n", - " ply conda-forge/noarch::ply-3.11-py_1\n", - " pyasn1 conda-forge/noarch::pyasn1-0.4.8-py_0\n", - " pydot conda-forge/noarch::pydot-1.2.4-py_0\n", - " pygit2 conda-forge/linux-64::pygit2-1.5.0-py39h3811e60_0\n", - " pygtrie conda-forge/noarch::pygtrie-2.3.2-pyh8c360ce_0\n", - " python-benedict conda-forge/noarch::python-benedict-0.24.0-pyhd8ed1ab_0\n", - " python-fsutil conda-forge/noarch::python-fsutil-0.5.0-pyhd8ed1ab_0\n", - " python-slugify conda-forge/noarch::python-slugify-5.0.2-pyhd8ed1ab_0\n", - " rich conda-forge/linux-64::rich-10.2.2-py39hf3d152e_0\n", - " ruamel.yaml conda-forge/linux-64::ruamel.yaml-0.17.4-py39h3811e60_0\n", - " ruamel.yaml.clib conda-forge/linux-64::ruamel.yaml.clib-0.2.2-py39h3811e60_2\n", - " shortuuid conda-forge/linux-64::shortuuid-1.0.1-py39hf3d152e_4\n", - " shtab conda-forge/noarch::shtab-1.3.6-pyhd8ed1ab_0\n", - " smmap conda-forge/noarch::smmap-3.0.5-pyh44b312d_0\n", - " tabulate conda-forge/noarch::tabulate-0.8.9-pyhd8ed1ab_0\n", - " text-unidecode conda-forge/noarch::text-unidecode-1.3-py_0\n", - " toml conda-forge/noarch::toml-0.10.2-pyhd8ed1ab_0\n", - " typing_extensions conda-forge/noarch::typing_extensions-3.7.4.3-py_0\n", - " unidecode conda-forge/noarch::unidecode-1.2.0-pyhd8ed1ab_0\n", - " voluptuous conda-forge/noarch::voluptuous-0.12.1-pyhd3deb0d_0\n", - " wheel conda-forge/noarch::wheel-0.36.2-pyhd3deb0d_0\n", - " zc.lockfile conda-forge/noarch::zc.lockfile-2.0-py_0\n", - "\n", - "The following packages will be UPDATED:\n", - "\n", - " certifi pkgs/main::certifi-2020.12.5-py39h06a~ --> conda-forge::certifi-2020.12.5-py39hf3d152e_1\n", - " libgcc-ng pkgs/main::libgcc-ng-9.1.0-hdf63c60_0 --> conda-forge::libgcc-ng-9.3.0-h2828fa1_19\n", - "\n", - "The following packages will be SUPERSEDED by a higher-priority channel:\n", - "\n", - " _libgcc_mutex pkgs/main::_libgcc_mutex-0.1-main --> conda-forge::_libgcc_mutex-0.1-conda_forge\n", - " ca-certificates pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-ha878542_0\n", - " conda pkgs/main::conda-4.10.1-py39h06a4308_1 --> conda-forge::conda-4.10.1-py39hf3d152e_0\n", - " openssl pkgs/main::openssl-1.1.1k-h27cfd23_0 --> conda-forge::openssl-1.1.1k-h7f98852_0\n", - "\n", - "\n", - "\n", - "Downloading and Extracting Packages\n" + "Collecting dvc\n", + "\u001b[33m Cache 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"\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/41/99/17/7135f635215e1f61e906295afd11f4f791cfe4ab45f3bfdca2\n", + " Running setup.py bdist_wheel for flufl.lock ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/4f/51/d7/f65a7b7f37da7594f7021b122fe677187667ad21f1171d2514\n", + " Running setup.py bdist_wheel for psutil ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/6e/94/8f/ef906811f8dcf6824a9747df0381615be48d723073fb59a317\n", + " Running setup.py bdist_wheel for configobj ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/f1/e4/16/4981ca97c2d65106b49861e0b35e2660695be7219a2d351ee0\n", + " Running setup.py bdist_wheel for pygtrie ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/db/57/91/73782136379fe419036c5ec0e4070d8b3a35f2a36bd6a94ed8\n", + " Running setup.py bdist_wheel for dulwich ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/63/28/8c/0bbff7d6e30f3fc523639b000b33aba9155152e9eb23689ba0\n", + " Running setup.py bdist_wheel for pygit2 ... \u001b[?25lerror\n", + " Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" bdist_wheel -d /tmp/tmp4kyicel3pip-wheel- --python-tag cp36:\n", + " running bdist_wheel\n", + " running build\n", + " running build_py\n", + " creating build\n", + " creating build/lib.linux-x86_64-3.6\n", + " creating build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " creating build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " running build_ext\n", + " generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n", + " creating build/temp.linux-x86_64-3.6\n", + " building 'pygit2._pygit2' extension\n", + " creating build/temp.linux-x86_64-3.6/src\n", + " x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n", + " In file included from src/blob.c:30:0:\n", + " src/blob.h:33:10: fatal error: git2.h: No such file or directory\n", + " #include \n", + " ^~~~~~~~\n", + " compilation terminated.\n", + " error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n", + " \n", + " ----------------------------------------\n", + "\u001b[31m Failed building wheel for pygit2\u001b[0m\n", + "\u001b[?25h Running setup.py clean for pygit2\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + " Running setup.py bdist_wheel for contextvars ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/a5/7d/68/1ebae2668bda2228686e3c1cf16f2c2384cea6e9334ad5f6de\n", + " Running setup.py bdist_wheel for atpublic ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/33/25/82/57d46b60a048f8e30b31f10497539498a3b826c78e2433c2d4\n", + " Running setup.py bdist_wheel for mailchecker ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/fd/e1/e7/804e77a70eac7103bdba2f4b3e1eba36840b38554a4b8152c8\n", + " Running setup.py bdist_wheel for ftfy ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/99/2c/e6/109c8a28fef7a443f67ba58df21fe1d0067ac3322e75e6b0b7\n", + " Running setup.py bdist_wheel for future ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/8b/99/a0/81daf51dcd359a9377b110a8a886b3895921802d2fc1b2397e\n", + " Running setup.py bdist_wheel for idna-ssl ... \u001b[?25ldone\n", + "\u001b[?25h Stored in directory: /home/tomek/.cache/pip/wheels/d3/00/b3/32d613e19e08a739751dd6bf998cfed277728f8b2127ad4eb7\n", + "Successfully built nanotime flufl.lock psutil configobj pygtrie dulwich contextvars atpublic mailchecker ftfy future idna-ssl\n", + "Failed to build pygit2\n", + "Installing collected packages: setuptools, colorama, dictdiffer, ply, nanotime, asynctest, idna, multidict, typing-extensions, yarl, idna-ssl, frozenlist, async-timeout, aiosignal, charset-normalizer, attrs, aiohttp, certifi, urllib3, requests, fsspec, decorator, networkx, atpublic, flufl.lock, shtab, shortuuid, smmap, gitdb, gitpython, zipp, importlib-resources, tqdm, zc.lockfile, dataclasses, commonmark, pygments, rich, aiohttp-retry, voluptuous, psutil, six, importlib-metadata, flatten-dict, configobj, pygtrie, tabulate, dulwich, appdirs, ruamel.yaml.clib, ruamel.yaml, text-unidecode, python-slugify, python-fsutil, mailchecker, pyyaml, toml, xmltodict, phonenumbers, wcwidth, ftfy, python-dateutil, python-benedict, future, pyparsing, grandalf, dpath, pycparser, cffi, cached-property, pygit2, pyasn1, pathspec, immutables, contextvars, distro, packaging, diskcache, pydot, funcy, dvc\n", + " Running setup.py install for pygit2 ... \u001b[?25lerror\n", + " Complete output from command /usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:\n", + " running install\n", + " /home/tomek/.local/lib/python3.6/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.\n", + " setuptools.SetuptoolsDeprecationWarning,\n", + " running build\n", + " running build_py\n", + " creating build\n", + " creating build/lib.linux-x86_64-3.6\n", + " creating build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/__init__.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/_build.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/_run.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/blame.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/callbacks.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/config.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/credentials.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/errors.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/ffi.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/index.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/packbuilder.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/refspec.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/remote.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/repository.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/settings.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/submodule.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " copying pygit2/utils.py -> build/lib.linux-x86_64-3.6/pygit2\n", + " creating build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/attr.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/blame.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/buffer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/callbacks.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/checkout.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/clone.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/common.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/config.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/describe.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/diff.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/errors.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/graph.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/index.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/indexer.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/merge.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/net.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/oid.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/pack.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/proxy.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/refspec.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/remote.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/repository.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/revert.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/stash.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/strarray.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/submodule.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/transport.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " copying pygit2/decl/types.h -> build/lib.linux-x86_64-3.6/pygit2/decl\n", + " running build_ext\n", + " generating cffi module 'build/temp.linux-x86_64-3.6/pygit2._libgit2.c'\n", + " creating build/temp.linux-x86_64-3.6\n", + " building 'pygit2._pygit2' extension\n", + " creating build/temp.linux-x86_64-3.6/src\n", + " x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/usr/include/python3.6m -c src/blob.c -o build/temp.linux-x86_64-3.6/src/blob.o\n", + " In file included from src/blob.c:30:0:\n", + " src/blob.h:33:10: fatal error: git2.h: No such file or directory\n", + " #include \n", + " ^~~~~~~~\n", + " compilation terminated.\n", + " error: command 'x86_64-linux-gnu-gcc' failed with exit status 1\n", + " \n", + " ----------------------------------------\n", + "\u001b[31mCommand \"/usr/bin/python3 -u -c \"import setuptools, tokenize;__file__='/tmp/pip-build-hr8mtrcf/pygit2/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))\" install --record /tmp/pip-6tml5js1-record/install-record.txt --single-version-externally-managed --compile --user --prefix=\" failed with error code 1 in /tmp/pip-build-hr8mtrcf/pygit2/\u001b[0m\n", + "\u001b[?25h" ] } ], "source": [ - "conda install dvc" + "!pip3 install dvc" ] }, { @@ -525,10 +737,11 @@ " - dużymi plikami, takimi jak plikami z danymi wejściowymi czy plikami modeli, trudno zarządza się za pomocą gita, ze względu na problemy z:\n", " - wydajnością\n", " - przestrzenią w repozytorium\n", + " - ograniczenia ze strony serwisu (np. [limit 100 MB na plik w Github](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-large-files-on-github))\n", " - Git posiada rozszerzenie [lfs(Large File Storage)](https://git-lfs.github.com/), które stanowi pewne rozwiązanie tego problemu. Same pliki przechowywane są na specjalnym zdalnym serwerze, w repozytorium przechowywane są jedynie odnośniki do tych plików i pewne metadane\n", " - DVC proponuje podobne podejście, ale:\n", " - pliki mogą być przechowywane na niemal dowolnym serwerze, również lokalnie\n", - " - brak limitu wielkości plików (w Git-LFS najczęściej limit 2GB)\n", + " - brak limitu wielkości plików (w Git-LFS na Github [limit 2GB](https://docs.github.com/en/repositories/working-with-files/managing-large-files/about-git-large-file-storage))\n", " - DVC zapewnia dodatkowe narzędzie umożliwiające śledzenie plików i ich powiązań z wynikami eksperymentów\n", " - więcej, patrz [tutaj](https://dvc.org/doc/user-guide/related-technologies)" ] @@ -776,6 +989,28 @@ "!ls -l .dvc/cache/71" ] }, + { + "cell_type": "code", + "execution_count": 1, + "id": "91da7848", + "metadata": { + "slideshow": { + "slide_type": "slide" + } + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ls: cannot access './data': No such file or directory\r\n" + ] + } + ], + "source": [ + "!ls -l ./data" + ] + }, { "cell_type": "markdown", "id": "901e8e90", @@ -792,6 +1027,26 @@ " - w realnych zastosowaniach podalibyśmy tutaj ścieżkę do jakiegoś zasobu dostępnego przez inernet jak np. serwer SFTP, ścieżka do AWS S3 itp." ] }, + { + "cell_type": "markdown", + "id": "19b76570", + "metadata": {}, + "source": [ + "Obsługiwane typy zdalnych lokalizacji (remotes): https://dvc.org/doc/command-reference/remote/add#supported-storage-types\n", + " - Amazon S3\n", + " - S3-compatible storage\n", + " - Microsoft Azure Blob Storage\n", + " - Google Drive\n", + " - Google Cloud Storage\n", + " - Aliyun OSS\n", + " - SSH\n", + " - HDFS\n", + " - WebHDFS\n", + " - HTTP\n", + " - WebDAV\n", + " - local remote" + ] + }, { "cell_type": "code", "execution_count": 28, @@ -944,7 +1199,7 @@ } }, "source": [ - "Dodawanie nowych plików i modyfikacja istniejących wygląda tak podobnie jak przy zwykłych plikach śledzonych przez git, tylko zamiast `git` używamy polecenia `dvc` a dodatkowo pamiętamy o zarządzaniu plikami `*.dvc` za pomocą gita:" + "Dodawanie nowych plików i modyfikacja istniejących wygląda podobnie jak przy zwykłych plikach śledzonych przez git, tylko zamiast `git` używamy polecenia `dvc` a dodatkowo pamiętamy o zarządzaniu plikami `*.dvc` za pomocą gita:" ] }, { @@ -1637,7 +1892,7 @@ "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", - "version": "3.9.1" + "version": "3.6.9" }, "slideshow": { "slide_type": "slide"