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+{
+ "cells": [
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "### Uczenie maszynowe\n",
+ "## Materiał dodatkowy\n",
+ "# 2A. Regresja logistyczna"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Wbrew nazwie, *regresja* logistyczna jest algorytmem służącym do rozwiązywania problemów *klasyfikacji* (wcale nie problemów *regresji*!)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "## 2A.1. Dwuklasowa regresja logistyczna"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "Zacznijmy od najprostszego przypadku: chcemy nasze dane przypisać do jednej z **dwóch** klas.\n",
+ "W tym celu użyjemy regresji logistycznej **dwuklasowej**."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "![](\"https://upload.wikimedia.org/wikipedia/commons/thumb/5/56/Kosaciec_szczecinkowaty_Iris_setosa.jpg/450px-Kosaciec_szczecinkowaty_Iris_setosa.jpg\")
\n",
+ "\n",
+ "### Przykład: kosaciec szczecinkowy (*Iris setosa*)\n",
+ "\n",
+ "Mamy dane dotyczące długości płatków i chcielibyśmy na tej podstawie określić, czy jest to roślina z gatunku *Iris setosa*"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 1,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Przydatne importy\n",
+ "\n",
+ "import numpy as np\n",
+ "import matplotlib\n",
+ "import matplotlib.pyplot as pl\n",
+ "import pandas\n",
+ "import ipywidgets as widgets\n",
+ "\n",
+ "%matplotlib inline\n",
+ "%config InlineBackend.figure_format = 'svg'\n",
+ "\n",
+ "from IPython.display import display, Math, Latex\n",
+ "\n",
+ "# Przydatne funkcje\n",
+ "\n",
+ "# Wyświetlanie macierzy w LaTeX-u\n",
+ "def LatexMatrix(matrix):\n",
+ " ltx = r'\\left[\\begin{array}'\n",
+ " m, n = matrix.shape\n",
+ " ltx += '{' + (\"r\" * n) + '}'\n",
+ " for i in range(m):\n",
+ " ltx += r\" & \".join([('%.4f' % j.item()) for j in matrix[i]]) + r\" \\\\ \"\n",
+ " ltx += r'\\end{array}\\right]'\n",
+ " return ltx\n",
+ "\n",
+ "# Hipoteza (wersja macierzowa)\n",
+ "def hMx(theta, X):\n",
+ " return X * theta\n",
+ "\n",
+ "# Wykres danych (wersja macierzowa)\n",
+ "def regdotsMx(X, y, xlabel, ylabel): \n",
+ " fig = pl.figure(figsize=(16*.6, 9*.6))\n",
+ " ax = fig.add_subplot(111)\n",
+ " fig.subplots_adjust(left=0.1, right=0.9, bottom=0.1, top=0.9)\n",
+ " ax.scatter([X[:, 1]], [y], c='r', s=50, label='Dane')\n",
+ " \n",
+ " ax.set_xlabel(xlabel)\n",
+ " ax.set_ylabel(ylabel)\n",
+ " ax.margins(.05, .05)\n",
+ " pl.ylim(y.min() - 1, y.max() + 1)\n",
+ " pl.xlim(np.min(X[:, 1]) - 1, np.max(X[:, 1]) + 1)\n",
+ " return fig\n",
+ "\n",
+ "# Wykres krzywej regresji (wersja macierzowa)\n",
+ "def reglineMx(fig, fun, theta, X):\n",
+ " ax = fig.axes[0]\n",
+ " x0 = np.min(X[:, 1]) - 1.0\n",
+ " x1 = np.max(X[:, 1]) + 1.0\n",
+ " L = [x0, x1]\n",
+ " LX = np.matrix([1, x0, 1, x1]).reshape(2, 2)\n",
+ " ax.plot(L, fun(theta, LX), linewidth='2',\n",
+ " label=(r'$y={theta0:.2}{op}{theta1:.2}x$'.format(\n",
+ " theta0=float(theta[0][0]),\n",
+ " theta1=(float(theta[1][0]) if theta[1][0] >= 0 else float(-theta[1][0])),\n",
+ " op='+' if theta[1][0] >= 0 else '-')))\n",
+ "\n",
+ "# Legenda wykresu\n",
+ "def legend(fig):\n",
+ " ax = fig.axes[0]\n",
+ " handles, labels = ax.get_legend_handles_labels()\n",
+ " # try-except block is a fix for a bug in Poly3DCollection\n",
+ " try:\n",
+ " fig.legend(handles, labels, fontsize='15', loc='lower right')\n",
+ " except AttributeError:\n",
+ " pass\n",
+ "\n",
+ "# Wersja macierzowa funkcji kosztu\n",
+ "def JMx(theta,X,y):\n",
+ " m = len(y)\n",
+ " J = 1.0 / (2.0 * m) * ((X * theta - y).T * ( X * theta - y))\n",
+ " return J.item()\n",
+ "\n",
+ "# Wersja macierzowa gradientu funkcji kosztu\n",
+ "def dJMx(theta,X,y):\n",
+ " return 1.0 / len(y) * (X.T * (X * theta - y)) \n",
+ "\n",
+ "# Implementacja algorytmu gradientu prostego za pomocą numpy i macierzy\n",
+ "def GDMx(fJ, fdJ, theta, X, y, alpha=0.1, eps=10**-3):\n",
+ " current_cost = fJ(theta, X, y)\n",
+ " logs = [[current_cost, theta]]\n",
+ " while True:\n",
+ " theta = theta - alpha * fdJ(theta, X, y) # implementacja wzoru\n",
+ " current_cost, prev_cost = fJ(theta, X, y), current_cost\n",
+ " if current_cost > 10000:\n",
+ " break\n",
+ " if abs(prev_cost - current_cost) <= eps:\n",
+ " break\n",
+ " logs.append([current_cost, theta]) \n",
+ " return theta, logs\n",
+ "\n",
+ "thetaStartMx = np.matrix([0, 0]).reshape(2, 1)\n",
+ "\n",
+ "# Funkcja, która rysuje próg\n",
+ "def threshold(fig, theta):\n",
+ " x_thr = (0.5 - theta.item(0)) / theta.item(1)\n",
+ " ax = fig.axes[0]\n",
+ " ax.plot([x_thr, x_thr], [-1, 2],\n",
+ " color='orange', linestyle='dashed',\n",
+ " label=u'próg: $x={:.2F}$'.format(x_thr))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " sl sw pl pw Gatunek\n",
+ "0 5.2 3.4 1.4 0.2 Iris-setosa\n",
+ "1 5.1 3.7 1.5 0.4 Iris-setosa\n",
+ "2 6.7 3.1 5.6 2.4 Iris-virginica\n",
+ "3 6.5 3.2 5.1 2.0 Iris-virginica\n",
+ "4 4.9 2.5 4.5 1.7 Iris-virginica\n",
+ "5 6.0 2.7 5.1 1.6 Iris-versicolor\n"
+ ]
+ }
+ ],
+ "source": [
+ "# Wczytanie danych\n",
+ "\n",
+ "data_iris = pandas.read_csv('iris.csv')\n",
+ "print(data_iris[:6])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 3,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "skip"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " dł. płatka Iris setosa?\n",
+ "0 1.4 1\n",
+ "1 1.5 1\n",
+ "2 5.6 0\n",
+ "3 5.1 0\n",
+ "4 4.5 0\n",
+ "5 5.1 0\n"
+ ]
+ }
+ ],
+ "source": [
+ "data_iris_setosa = pandas.DataFrame()\n",
+ "data_iris_setosa['dł. płatka'] = data_iris['pl'] # \"pl\" oznacza \"petal length\"\n",
+ "data_iris_setosa['Iris setosa?'] = data_iris['Gatunek'].apply(lambda x: 1 if x=='Iris-setosa' else 0)\n",
+ "print(data_iris_setosa[:6])"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Czy możemy tu zastosować regresję liniową?\n",
+ "\n",
+ "Spróbujmy:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "skip"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "(150, 2)\n"
+ ]
+ }
+ ],
+ "source": [
+ "print(data_iris_setosa.values.shape)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 5,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "import numpy as np\n",
+ "\n",
+ "m, n_plus_1 = data_iris_setosa.values.shape\n",
+ "n = n_plus_1 - 1\n",
+ "Xn = data_iris_setosa.values[:, 0:n].reshape(m, n)\n",
+ "\n",
+ "XMx3 = np.matrix(np.concatenate((np.ones((m, 1)), Xn), axis=1)).reshape(m, n_plus_1)\n",
+ "yMx3 = np.matrix(data_iris_setosa.values[:, 1]).reshape(m, 1)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 6,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "data": {
+ "image/svg+xml": [
+ "\r\n",
+ "\r\n",
+ "\r\n",
+ "\r\n"
+ ],
+ "text/plain": [
+ ""
+ ]
+ },
+ "metadata": {
+ "needs_background": "light"
+ },
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "fig = regdotsMx(XMx3, yMx3, 'x', 'Iris setosa?')\n",
+ "theta_e3, logs3 = GDMx(JMx, dJMx, thetaStartMx, XMx3, yMx3, alpha=0.03, eps=0.000001)\n",
+ "reglineMx(fig, hMx, theta_e3, XMx3)\n",
+ "threshold(fig, theta_e3)\n",
+ "legend(fig)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ " * Krzywa regresji liniowej jest niezbyt dopasowana do danych klasyfikacyjnych.\n",
+ " * Zastosowanie progu $y = 0.5$ nie zawsze pomaga uzyskać sensowny rezultat.\n",
+ " * $h(x)$ może przyjmować wartości mniejsze od $0$ i większe od $1$ – jak interpretować takie wyniki?\n",
+ "\n",
+ "Wniosek: w przypadku problemów klasyfikacyjnych regresja liniowa nie wydaje się najlepszym rozwiązaniem."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "source": [
+ "Zdefiniujmy sobie następującą funkcję, którą będziemy nazywać funkcją *logistyczną* (albo *sigmoidalną*):"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "**Funkcja logistyczna (sigmoidalna)**:\n",
+ "\n",
+ "$$g(x) = \\dfrac{1}{1+e^{-x}}$$"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Funkjca logistycza\n",
+ "\n",
+ "def logistic(x):\n",
+ " return 1.0 / (1.0 + np.exp(-x))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 8,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "import matplotlib.pyplot as plt\n",
+ "def plot_logistic():\n",
+ " x = np.linspace(-5,5,200)\n",
+ " y = logistic(x)\n",
+ "\n",
+ " fig = plt.figure(figsize=(7,5))\n",
+ " ax = fig.add_subplot(111)\n",
+ " plt.ylim(-.1,1.1)\n",
+ " ax.plot(x, y, linewidth='2')"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Wykres funkcji logistycznej $g(x) = \\dfrac{1}{1+e^{-x}}$:"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 9,
+ "metadata": {
+ "scrolled": true,
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "outputs": [
+ {
+ "data": {
+ "image/svg+xml": [
+ "\r\n",
+ "\r\n",
+ "\r\n",
+ "\r\n"
+ ],
+ "text/plain": [
+ ""
+ ]
+ },
+ "metadata": {
+ "needs_background": "light"
+ },
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "plot_logistic()"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "source": [
+ "Funkcja logistyczna przekształca zbiór liczb rzeczywistych $\\mathbb{R}$ w przedział otwarty $(0, 1)$."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Funkcja regresji logistycznej:\n",
+ "\n",
+ "$$h_\\theta(x) = g(\\theta^T \\, x) = \\dfrac{1}{1 + e^{-\\theta^T x}}$$"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "source": [
+ "Wersja macierzowa:\n",
+ "\n",
+ "$$h_\\theta(X) = g(X \\, \\theta) = \\dfrac{1}{1 + e^{-X \\theta}}$$"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 10,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "skip"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Funkcja regresji logistcznej\n",
+ "def h(theta, X):\n",
+ " return 1.0/(1.0 + np.exp(-X * theta))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 52,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "skip"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "[[0.00323613]]\n"
+ ]
+ }
+ ],
+ "source": [
+ "#print(XMx3)\n",
+ "print(h(thetaBest, np.matrix([1, 5.4])))"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Funkcja kosztu dla regresji logistycznej:\n",
+ "\n",
+ "$$J(\\theta) = -\\dfrac{1}{m} \\left( \\sum_{i=1}^{m} y^{(i)} \\log h_\\theta( x^{(i)} ) + \\left( 1 - y^{(i)} \\right) \\log \\left( 1 - h_\\theta (x^{(i)}) \\right) \\right)$$"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "source": [
+ "Gradient dla regresji logistycznej (wersja macierzowa):\n",
+ "\n",
+ "$$\\nabla J(\\theta) = \\frac{1}{|\\vec y|} X^T \\left( h_\\theta(X) - \\vec y \\right)$$\n",
+ "\n",
+ "(Jedyna różnica między gradientem dla regresji logistycznej a gradientem dla regresji liniowej to postać $h_\\theta$)."
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 37,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Funkcja kosztu dla regresji logistycznej\n",
+ "def J(h, theta, X, y):\n",
+ " m = len(y)\n",
+ " h_val = h(theta, X)\n",
+ " s1 = np.multiply(y, np.log(h_val))\n",
+ " s2 = np.multiply((1 - y), np.log(1 - h_val))\n",
+ " return -np.sum(s1 + s2, axis=0) / m"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 38,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Gradient dla regresji logistycznej\n",
+ "def dJ(h, theta, X, y):\n",
+ " return 1.0 / len(y) * (X.T * (h(theta, X) - y))"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 39,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Metoda gradientu prostego dla regresji logistycznej\n",
+ "def GD(h, fJ, fdJ, theta, X, y, alpha=0.01, eps=10**-3, maxSteps=10000):\n",
+ " errorCurr = fJ(h, theta, X, y)\n",
+ " errors = [[errorCurr, theta]]\n",
+ " while True:\n",
+ " # oblicz nowe theta\n",
+ " theta = theta - alpha * fdJ(h, theta, X, y)\n",
+ " # raportuj poziom błędu\n",
+ " errorCurr, errorPrev = fJ(h, theta, X, y), errorCurr\n",
+ " # kryteria stopu\n",
+ " if abs(errorPrev - errorCurr) <= eps:\n",
+ " break\n",
+ " if len(errors) > maxSteps:\n",
+ " break\n",
+ " errors.append([errorCurr, theta]) \n",
+ " return theta, errors"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 40,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "error = [[0.05755617]]\n",
+ "theta = [[ 5.02530461]\n",
+ " [-1.99174803]]\n"
+ ]
+ }
+ ],
+ "source": [
+ "# Uruchomienie metody gradientu prostego dla regresji logistycznej\n",
+ "thetaBest, errors = GD(h, J, dJ, thetaStartMx, XMx3, yMx3, \n",
+ " alpha=0.1, eps=10**-7, maxSteps=1000)\n",
+ "print(\"error =\", errors[-1][0])\n",
+ "print(\"theta =\", thetaBest)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 16,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Funkcja regresji logistycznej (wersja skalarna)\n",
+ "def scalar_logistic_regression_function(theta, x):\n",
+ " return 1.0/(1.0 + np.exp(-(theta.item(0) + theta.item(1) * x)))\n",
+ "\n",
+ "# Rysowanie progu\n",
+ "def threshold_val(fig, x_thr):\n",
+ " ax = fig.axes[0]\n",
+ " ax.plot([x_thr, x_thr], [-1, 2],\n",
+ " color='orange', linestyle='dashed',\n",
+ " label=u'próg: $x={:.2F}$'.format(x_thr))\n",
+ "\n",
+ "# Wykres krzywej regresji logistycznej\n",
+ "def logistic_regline(fig, theta, X):\n",
+ " ax = fig.axes[0]\n",
+ " x0 = np.min(X[:, 1]) - 1.0\n",
+ " x1 = np.max(X[:, 1]) + 1.0\n",
+ " Arg = np.arange(x0, x1, 0.1)\n",
+ " Val = scalar_logistic_regression_function(theta, Arg)\n",
+ " ax.plot(Arg, Val, linewidth='2')"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 17,
+ "metadata": {
+ "scrolled": true,
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "data": {
+ "image/svg+xml": [
+ "\r\n",
+ "\r\n",
+ "\r\n",
+ "\r\n"
+ ],
+ "text/plain": [
+ ""
+ ]
+ },
+ "metadata": {
+ "needs_background": "light"
+ },
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "fig = regdotsMx(XMx3, yMx3, xlabel='x', ylabel='Iris setosa?')\n",
+ "logistic_regline(fig, thetaBest, XMx3)\n",
+ "threshold_val(fig, 2.5)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Traktujemy wartość $h_\\theta(x)$ jako prawdopodobieństwo, że cecha przyjmie wartość pozytywną:\n",
+ "\n",
+ "$$ h_\\theta(x) = P(y = 1 \\, | \\, x; \\theta) $$"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "source": [
+ "Jeżeli $h_\\theta(x) > 0.5$, to dla takiego $x$ będziemy przewidywać wartość $y = 1$.\n",
+ "W przeciwnym wypadku uprzewidzimy $y = 0$."
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "### Dwuklasowa regresja logistyczna: więcej cech"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "source": [
+ "Jak postąpić, jeżeli będziemy mieli więcej niż jedną cechę $x$?"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "source": [
+ "Weźmy pod uwagę następujące cechy:\n",
+ " * długość działek kielicha\n",
+ " * szerokość działek kielicha\n",
+ " * długość płatka\n",
+ " * szerokość płatka"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 18,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ " dł. płatków szer. płatków dł. dz. k. szer. dz. k. Iris setosa?\n",
+ "0 1.4 0.2 5.2 3.4 1\n",
+ "1 1.5 0.4 5.1 3.7 1\n",
+ "2 5.6 2.4 6.7 3.1 0\n",
+ "3 5.1 2.0 6.5 3.2 0\n",
+ "4 4.5 1.7 4.9 2.5 0\n",
+ "5 5.1 1.6 6.0 2.7 0\n"
+ ]
+ }
+ ],
+ "source": [
+ "data_iris_setosa_multi = pandas.DataFrame()\n",
+ "data_iris_setosa_multi['dł. płatków'] = data_iris['pl'] # \"pl\" oznacza \"petal length\" (długość płatków)\n",
+ "data_iris_setosa_multi['szer. płatków'] = data_iris['pw'] # \"pw\" oznacza \"petal width\" (szerokość płatków)\n",
+ "data_iris_setosa_multi['dł. dz. k.'] = data_iris['sl'] # \"sl\" oznacza \"sepal length\" (długość działek kielicha)\n",
+ "data_iris_setosa_multi['szer. dz. k.'] = data_iris['sw'] # \"sw\" oznacza \"sepal width\" (szerokość działek kielicha)\n",
+ "data_iris_setosa_multi['Iris setosa?'] = data_iris['Gatunek'].apply(lambda x: 1 if x=='Iris-setosa' else 0)\n",
+ "print(data_iris_setosa_multi[:6])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 19,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "notes"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "%matplotlib inline\n",
+ "\n",
+ "import matplotlib.pyplot as plt\n",
+ "import seaborn"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 20,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "data": {
+ "text/plain": [
+ ""
+ ]
+ },
+ "execution_count": 20,
+ "metadata": {},
+ "output_type": "execute_result"
+ },
+ {
+ "data": {
+ "image/svg+xml": [
+ "\r\n",
+ "\r\n",
+ "\r\n",
+ "\r\n"
+ ],
+ "text/plain": [
+ ""
+ ]
+ },
+ "metadata": {
+ "needs_background": "light"
+ },
+ "output_type": "display_data"
+ }
+ ],
+ "source": [
+ "# Poniższy wykres przedstawia zależności między wszystkimi cechami\n",
+ "\n",
+ "seaborn.pairplot(\n",
+ " data_iris_setosa_multi,\n",
+ " vars=[c for c in data_iris_setosa_multi.columns if c != 'Iris setosa?'], \n",
+ " hue='Iris setosa?', height=1.5, aspect=1.75)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 21,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "[[1. 1.4 0.2 5.2 3.4]\n",
+ " [1. 1.5 0.4 5.1 3.7]\n",
+ " [1. 5.6 2.4 6.7 3.1]\n",
+ " [1. 5.1 2. 6.5 3.2]\n",
+ " [1. 4.5 1.7 4.9 2.5]\n",
+ " [1. 5.1 1.6 6. 2.7]]\n",
+ "[[1.]\n",
+ " [1.]\n",
+ " [0.]\n",
+ " [0.]\n",
+ " [0.]\n",
+ " [0.]]\n"
+ ]
+ }
+ ],
+ "source": [
+ "# Przygotowanie danych\n",
+ "m, n_plus_1 = data_iris_setosa_multi.values.shape\n",
+ "n = n_plus_1 - 1\n",
+ "Xn = data_iris_setosa_multi.values[:, 0:n].reshape(m, n)\n",
+ "\n",
+ "XMx4 = np.matrix(np.concatenate((np.ones((m, 1)), Xn), axis=1)).reshape(m, n_plus_1)\n",
+ "yMx4 = np.matrix(data_iris_setosa_multi.values[:, n]).reshape(m, 1)\n",
+ "\n",
+ "print(XMx4[:6])\n",
+ "print(yMx4[:6])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 22,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [],
+ "source": [
+ "# Podział danych na zbiór trenujący i testowy\n",
+ "XTrain, XTest = XMx4[:100], XMx4[100:]\n",
+ "yTrain, yTest = yMx4[:100], yMx4[100:]\n",
+ "\n",
+ "# Macierz parametrów początkowych\n",
+ "thetaTemp = np.ones(5).reshape(5,1)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 23,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "error = [[0.006797]]\n",
+ "theta = [[ 1.11414027]\n",
+ " [-2.89324615]\n",
+ " [-0.66543637]\n",
+ " [ 0.14887292]\n",
+ " [ 2.13284493]]\n"
+ ]
+ }
+ ],
+ "source": [
+ "thetaBest, errors = GD(h, J, dJ, thetaTemp, XTrain, yTrain, \n",
+ " alpha=0.1, eps=10**-7, maxSteps=1000)\n",
+ "print(\"error =\", errors[-1][0])\n",
+ "print(\"theta =\", thetaBest)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "### Funkcja decyzyjna regresji logistycznej\n",
+ "\n",
+ "Funkcja decyzyjna mówi o tym, kiedy nasz algorytm będzie przewidywał $y = 1$, a kiedy $y = 0$\n",
+ "\n",
+ "$$ c = \\left\\{ \n",
+ "\\begin{array}{ll}\n",
+ "1, & \\mbox{gdy } P(y=1 \\, | \\, x; \\theta) > 0.5 \\\\\n",
+ "0 & \\mbox{w przeciwnym przypadku}\n",
+ "\\end{array}\\right.\n",
+ "$$\n",
+ "\n",
+ "$$ P(y=1 \\,| \\, x; \\theta) = h_\\theta(x) $$"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 24,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "theta = [[ 1.11414027]\n",
+ " [-2.89324615]\n",
+ " [-0.66543637]\n",
+ " [ 0.14887292]\n",
+ " [ 2.13284493]]\n",
+ "x0 = [[1. 6.3 1.8 7.3 2.9]]\n",
+ "h(x0) = 1.6061436959824898e-05\n",
+ "c(x0) = (0, 1.6061436959824898e-05) \n",
+ "\n"
+ ]
+ }
+ ],
+ "source": [
+ "def classifyBi(theta, X):\n",
+ " prob = h(theta, X).item()\n",
+ " return (1, prob) if prob > 0.5 else (0, prob)\n",
+ "\n",
+ "print(\"theta =\", thetaBest)\n",
+ "print(\"x0 =\", XTest[0])\n",
+ "print(\"h(x0) =\", h(thetaBest, XTest[0]).item())\n",
+ "print(\"c(x0) =\", classifyBi(thetaBest, XTest[0]), \"\\n\")"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "### Skuteczność"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 25,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "outputs": [
+ {
+ "name": "stdout",
+ "output_type": "stream",
+ "text": [
+ "0 <=> 0 -- prob: 0.0\n",
+ "1 <=> 1 -- prob: 0.9816\n",
+ "0 <=> 0 -- prob: 0.0001\n",
+ "0 <=> 0 -- prob: 0.0005\n",
+ "0 <=> 0 -- prob: 0.0001\n",
+ "1 <=> 1 -- prob: 0.9936\n",
+ "0 <=> 0 -- prob: 0.0059\n",
+ "0 <=> 0 -- prob: 0.0992\n",
+ "0 <=> 0 -- prob: 0.0001\n",
+ "0 <=> 0 -- prob: 0.0001\n",
+ "\n",
+ "Accuracy: 1.0\n"
+ ]
+ }
+ ],
+ "source": [
+ "acc = 0.0\n",
+ "for i, rest in enumerate(yTest):\n",
+ " cls, prob = classifyBi(thetaBest, XTest[i])\n",
+ " if i < 10:\n",
+ " print(int(yTest[i].item()), \"<=>\", cls, \"-- prob:\", round(prob, 4))\n",
+ " acc += cls == yTest[i].item()\n",
+ "\n",
+ "print(\"\\nAccuracy:\", acc / len(XTest))"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "slide"
+ }
+ },
+ "source": [
+ "## 2A.2. Wieloklasowa regresja logistyczna"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "### Przykład: gatunki irysów (kosaćców)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "\n",
+ "\n",
+ "Kosaciec szczecinkowy (*Iris setosa*)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "![](\"https://upload.wikimedia.org/wikipedia/commons/thumb/9/9f/Iris_virginica.jpg/736px-Iris_virginica.jpg\")
\n",
+ "\n",
+ "Kosaciec amerykański (*Iris virginica*)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "![](\"https://upload.wikimedia.org/wikipedia/commons/thumb/2/27/Blue_Flag%2C_Ottawa.jpg/600px-Blue_Flag%2C_Ottawa.jpg\")
\n",
+ "\n",
+ "Kosaciec różnobarwny (*Iris versicolor*)"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Cechy:\n",
+ " * długość działek kielicha\n",
+ " * szerokość działek kielicha\n",
+ " * długość płatka\n",
+ " * szerokość płatka"
+ ]
+ },
+ {
+ "cell_type": "markdown",
+ "metadata": {
+ "slideshow": {
+ "slide_type": "subslide"
+ }
+ },
+ "source": [
+ "Wczytanie danych"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 26,
+ "metadata": {
+ "slideshow": {
+ "slide_type": "fragment"
+ }
+ },
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ "\n",
+ "
\n",
+ " \n",
+ " \n",
+ " | \n",
+ " sl | \n",
+ " sw | \n",
+ " pl | \n",
+ " pw | \n",
+ " Gatunek | \n",
+ "
\n",
+ " \n",
+ " \n",
+ " \n",
+ " | 0 | \n",
+ " 5.2 | \n",
+ " 3.4 | \n",
+ " 1.4 | \n",
+ " 0.2 | \n",
+ " Iris-setosa | \n",
+ "
\n",
+ " \n",
+ " | 1 | \n",
+ " 5.1 | \n",
+ " 3.7 | \n",
+ " 1.5 | \n",
+ " 0.4 | \n",
+ " Iris-setosa | \n",
+ "
\n",
+ " \n",
+ " | 2 | \n",
+ " 6.7 | \n",
+ " 3.1 | \n",
+ " 5.6 | \n",
+ " 2.4 | \n",
+ " Iris-virginica | \n",
+ "
\n",
+ " \n",
+ " | 3 | \n",
+ " 6.5 | \n",
+ " 3.2 | \n",
+ " 5.1 | \n",
+ " 2.0 | \n",
+ " Iris-virginica | \n",
+ "
\n",
+ " \n",
+ " | 4 | \n",
+ " 4.9 | \n",
+ " 2.5 | \n",
+ " 4.5 | \n",
+ " 1.7 | \n",
+ " Iris-virginica | \n",
+ "
\n",
+ " \n",
+ " | 5 | \n",
+ " 6.0 | \n",
+ " 2.7 | \n",
+ " 5.1 | \n",
+ " 1.6 | \n",
+ " Iris-versicolor | \n",
+ "
\n",
+ " \n",
+ "
\n",
+ "