devel = 1 BISON = bison FLEX = flex CXX = g++ -std=c++11 #CXX = OMPI_CXX=clang++ mpic++ -fno-color-diagnostics --stdlib=libc++ --std=c++11 -I/u/cseed/llvm-3.1/lib/c++/v1 #CXX = clang++ -fno-color-diagnostics --stdlib=libc++ --std=c++11 INCLUDES = -I. -I/opt/local/include # OPTFLAGS = -g OPTFLAGS = -O2 -g # OPTFLAGS = -O2 -g -DNDEBUG LDFLAGS = -L/opt/local/lib CXXFLAGS = $(OPTFLAGS) -DHOME="\"`pwd`\"" -Wall -Wno-unused $(INCLUDES) LIB_OBJS = lib/refcount.o \ lib/lib.o lib/smallbitset.o lib/bitset.o lib/setcommon.o lib/io.o lib/directed_multigraph.o ALGEBRA_OBJS = algebra/algebra.o algebra/grading.o algebra/polynomial.o KNOTKIT_OBJS = planar_diagram.o dt_code.o knot_diagram.o cube.o steenrod_square.o \ spanning_tree_complex.o \ smoothing.o cobordism.o knot_tables.o sseq.o \ knot_parser/knot_parser.o knot_parser/knot_scanner.o \ rd_parser/rd_parser.o rd_parser/rd_scanner.o PERIODICITY_OBJS = periodicity.o COMMON_OBJS = $(KNOTKIT_OBJS) $(ALGEBRA_OBJS) $(LIB_OBJS) $(PERIODICITY_OBJS) LIB_HEADERS = lib/lib.h lib/show.h lib/refcount.h lib/pair.h lib/maybe.h lib/vector.h \ lib/set_wrapper.h lib/set.h lib/hashset.h \ lib/ullmanset.h lib/bitset.h lib/smallbitset.h lib/setcommon.h \ lib/map_wrapper.h lib/map.h lib/hashmap.h lib/ullmanmap.h lib/mapcommon.h \ lib/unionfind.h lib/priority_queue.h lib/io.h \ lib/directed_multigraph.h ALGEBRA_HEADERS = algebra/algebra.h algebra/grading.h algebra/module.h \ algebra/Z2.h algebra/linear_combination.h \ algebra/Z.h algebra/Zp.h algebra/Q.h \ algebra/polynomial.h algebra/multivariate_polynomial.h \ algebra/multivariate_laurentpoly.h algebra/fraction_field.h KNOTKIT_HEADERS = knotkit.h planar_diagram.h dt_code.h knot_diagram.h \ smoothing.h cobordism.h cube.h steenrod_square.h \ spanning_tree_complex.h cube_impl.h sseq.h simplify_chain_complex.h PERIODICITY_HEADERS = periodicity.h LIBS = -lgmpxx -lgmp -lz all: kk %.o : %.cc $(CXX) -c $(CXXFLAGS) $< -o $@ %.o : %.cpp $(CXX) -c $(CXXFLAGS) $< -o $@ kk: kk.o $(COMMON_OBJS) $(CXX) $(LDFLAGS) -pg -o kk $^ $(LIBS) main: main.o $(COMMON_OBJS) $(CXX) $(LDFLAGS) -o main $^ $(LIBS) mpimain: mpimain.o mpi_aux.o $(COMMON_OBJS) $(CXX) $(LDFLAGS) -o mpimain $^ $(LIBS) testlib: testlib.o $(COMMON_OBJS) $(CXX) $(LDFLAGS) -o testlib $^ ifeq ($(devel),1) knot_parser/knot_parser.cc knot_parser/knot_parser.hh: knot_parser/knot_parser.yy $(BISON) knot_parser/knot_parser.yy -o knot_parser/knot_parser.cc knot_parser/knot_scanner.cc: knot_parser/knot_scanner.ll $(FLEX) -o knot_parser/knot_scanner.cc knot_parser/knot_scanner.ll javakh_parser/javakh_parser.cc javakh_parser/javakh_parser.hh: javakh_parser/javakh_parser.yy $(BISON) javakh_parser/javakh_parser.yy -o javakh_parser/javakh_parser.cc javakh_parser/javakh_scanner.cc: javakh_parser/javakh_scanner.ll $(FLEX) -o javakh_parser/javakh_scanner.cc javakh_parser/javakh_scanner.ll rd_parser/rd_parser.cc rd_parser/rd_parser.hh: rd_parser/rd_parser.yy $(BISON) rd_parser/rd_parser.yy -o rd_parser/rd_parser.cc rd_parser/rd_scanner.cc: rd_parser/rd_scanner.ll $(FLEX) -o rd_parser/rd_scanner.cc rd_parser/rd_scanner.ll endif .PHONY: parser_files parser_files: \ knot_parser/knot_parser.cc knot_parser/knot_parser.hh \ knot_parser/knot_scanner.cc \ javakh_parser/javakh_parser.cc javakh_parser/javakh_parser.hh \ javakh_parser/javakh_scanner.cc \ rd_parser/rd_parser.cc rd_parser/rd_parser.hh \ rd_parser/rd_scanner.cc .PHONY: clean clean: rm -f *.o lib/*.o algebra/*.o knot_parser/*.o rd_parser/*.o rm -f main kk mpimain rm -f gmon.out .PHONY: realclean realclean: clean rm -f knot_parser/knot_parser.cc knot_parser/knot_parser.hh rm -f knot_parser/knot_scanner.cc rm -f knot_parser/location.hh knot_parser/position.hh knot_parser/stack.hh rm -f javakh_parser/javakh_parser.cc javakh_parser/javakh_parser.hh rm -f javakh_parser/javakh_scanner.cc rm -f javakh_parser/location.hh javakh_parser/position.hh javakh_parser/stack.hh rm -f rd_parser/rd_parser.cc rd_parser/rd_parser.hh rm -f rd_parser/rd_scanner.cc rm -f rd_parser/location.hh rd_parser/position.hh rd_parser/stack.hh $(LIB_OBJS): $(LIB_HEADERS) $(ALGEBRA_OBJS): $(ALGEBRA_HEADERS) $(LIB_HEADERS) $(KNOTKIT_OBJS) main.o mpimain.o kk.o: $(KNOTKIT_HEADERS) $(ALGEBRA_HEADERS) $(LIB_HEADERS) $(PERIODICITY_HEADERS) $(PERIODICITY_OBJS) : $(PERIODICITY_HEADERS) mpimain.o mpi_aux.o: mpi_aux.h