concordia-library/concordia/concordia.cpp

#include <sstream>
#include <boost/foreach.hpp>

#include "concordia/concordia.hpp"
#include "concordia/common/config.hpp"
#include "concordia/common/utils.hpp"

// ===========================================

std::string _createLibraryVersion();

// ===========================================

std::string Concordia::_libraryVersion = _createLibraryVersion();

// ===========================================

Concordia::Concordia() {
}

Concordia::Concordia(const std::string & indexPath,
                     const std::string & configFilePath):
    _indexPath(indexPath) {
    _config = boost::shared_ptr<ConcordiaConfig> (
                                new ConcordiaConfig(configFilePath));
    _index = boost::shared_ptr<ConcordiaIndex>(
                                new ConcordiaIndex(_getHashedIndexFilePath(),
                                                   _getMarkersFilePath()));
    _searcher = boost::shared_ptr<IndexSearcher>(new IndexSearcher());
    _initializeIndex();
}

Concordia::~Concordia() {
}

std::string & Concordia::getVersion() {
    return _libraryVersion;
}

std::string _createLibraryVersion() {
    std::stringstream version;

    version << CONCORDIA_VERSION_MAJOR
            << "."
            << CONCORDIA_VERSION_MINOR;

    return version.str();
}

TokenizedSentence
            Concordia::tokenize(const std::string & sentence,
                                bool byWhitespace,
                                bool generateCodes) {
    if (generateCodes) {
        TokenizedSentence result =
                    _hashGenerator->generateHash(sentence, byWhitespace);
        _hashGenerator->serializeWordMap();
        return result;
    } else {
        return _hashGenerator->generateTokens(sentence, byWhitespace);
    }
}

std::vector<TokenizedSentence> Concordia::tokenizeAll(
                     const std::vector<std::string> & sentences,
                     bool byWhitespace,
                     bool generateCodes) {
    std::vector<TokenizedSentence> result;

    if (generateCodes) {
        BOOST_FOREACH(std::string sentence, sentences) {
            result.push_back(_hashGenerator->generateHash(sentence,
                                                          byWhitespace));
        }

        _hashGenerator->serializeWordMap();
    } else {
        BOOST_FOREACH(std::string sentence, sentences) {
            result.push_back(_hashGenerator->generateTokens(sentence,
                                                            byWhitespace));
        }
    }
    return result;
}


// Sentences are written to disk and added to T.
// SA is generated on command by other methods.
TokenizedSentence Concordia::addExample(
                                      const Example & example) {
    return _index->addExample(_hashGenerator, _T, _markers, example);
}

// Sentences are written to disk and added to T.
// SA is generated on command by other methods.
void Concordia::addTokenizedExample(
                    const TokenizedSentence & tokenizedSentence,
                    const SUFFIX_MARKER_TYPE id) {
    _index->addTokenizedExample(_hashGenerator, _T,
                                _markers, tokenizedSentence, id);
}

void Concordia::addAllTokenizedExamples(
                const std::vector<TokenizedSentence> & tokenizedSentences,
                const std::vector<SUFFIX_MARKER_TYPE> & ids) {
    _index->addAllTokenizedExamples(_hashGenerator, _T,
                                _markers, tokenizedSentences, ids);
}


// Sentences are written to disk and added to T.
// SA is generated on command by other methods.
std::vector<TokenizedSentence> Concordia::addAllExamples(
                                 const std::vector<Example> & examples) {
    return _index->addAllExamples(_hashGenerator, _T, _markers, examples);
}

void Concordia::loadRAMIndexFromDisk() {
    if (boost::filesystem::exists(_getWordMapFilePath())
      && boost::filesystem::exists(_getHashedIndexFilePath())
      && boost::filesystem::exists(_getMarkersFilePath())) {
        try {
            // reading index from file
            _T->clear();
            std::ifstream hashedIndexFile;
            hashedIndexFile.open(
                _getHashedIndexFilePath().c_str(), std::ios::in
                                    | std::ios::ate | std::ios::binary);
            long hiFileSize = hashedIndexFile.tellg();
            if (hiFileSize > 0) {
                hashedIndexFile.seekg(0, std::ios::beg);

                while (!hashedIndexFile.eof()) {
                    INDEX_CHARACTER_TYPE character =
                                     Utils::readIndexCharacter(hashedIndexFile);
                    Utils::appendCharToSaucharVector(_T, character);
                }
                hashedIndexFile.close();
            } else {
                hashedIndexFile.close();
                throw ConcordiaException("Index corrupt: empty hash index file");
            }

            // reading markers from file
            _markers->clear();
            std::ifstream markersFile;
            markersFile.open(_getMarkersFilePath().c_str(), std::ios::in
                                             | std::ios::ate | std::ios::binary);
            long maFileSize = markersFile.tellg();
            if (maFileSize > 0) {
                markersFile.seekg(0, std::ios::beg);

                while (!markersFile.eof()) {
                    SUFFIX_MARKER_TYPE marker =
                                     Utils::readMarker(markersFile);
                    _markers->push_back(marker);
                }
                markersFile.close();
            } else {
                markersFile.close();
                throw ConcordiaException("Index corrupt: empty markers file");
            }
            // generating suffix array
            _index->generateSuffixArray(_T,_SA);
        } catch (const std::bad_alloc&) {
            throw ConcordiaException("Error allocating memory, probably out of memory.");            
        }
    } else {
        throw ConcordiaException("Index corrupt: missing files");
    }
}

void Concordia::refreshSAfromRAM() {
    _index->generateSuffixArray(_T,_SA);
}


void Concordia::_initializeIndex() {
    _hashGenerator = boost::shared_ptr<HashGenerator>(
                            new HashGenerator(_indexPath,
                                              _config));
    _T = boost::shared_ptr<std::vector<sauchar_t> >(new std::vector<sauchar_t>);
    _SA = boost::shared_ptr<std::vector<saidx_t> >(new std::vector<saidx_t>);
    _markers = boost::shared_ptr<std::vector<SUFFIX_MARKER_TYPE> >(
                                         new std::vector<SUFFIX_MARKER_TYPE>);
    if ( boost::filesystem::exists(_getWordMapFilePath())
      && boost::filesystem::exists(_getHashedIndexFilePath())
      && boost::filesystem::exists(_getMarkersFilePath())) {
        loadRAMIndexFromDisk();
    }
}

SUFFIX_MARKER_TYPE Concordia::countOccurrences(const std::string & pattern) {
    if (_T->size() > 0) {
        return _searcher->countOccurrences(_hashGenerator, _T,
                                         _markers, _SA, pattern);
    } else {
        return 0;
    }
}


MatchedPatternFragment Concordia::simpleSearch(
                                  const std::string & pattern,
                                  bool byWhitespace) {
    if (_T->size() > 0 && pattern.size() > 0) {
        return _searcher->simpleSearch(_hashGenerator, _T,
                                         _markers, _SA, pattern, byWhitespace);
    } else {
        // If the index or search pattern are empty, return an empty result.
        MatchedPatternFragment result(0, 0);
        return result;
    }
}

OccurrencesList Concordia::fullSearch(
                                  const std::string & pattern,
                                  int limit,
                                  int offset,
                                  bool byWhitespace) {
    if (_T->size() > 0 && pattern.size() > 0) {
        return _searcher->fullSearch(_hashGenerator, _T,
                                         _markers, _SA, pattern, limit, offset, byWhitespace);
    } else {
        // If the index or search pattern are empty, return an empty result.
        OccurrencesList result(0);
        return result;
    }
}


MatchedPatternFragment Concordia::lexiconSearch(
                                  const std::string & pattern,
                                  bool byWhitespace) {
    if (_T->size() > 0 && pattern.size() > 0) {
        return _searcher->lexiconSearch(_hashGenerator, _T,
                                         _markers, _SA, pattern, byWhitespace);
    } else {
        // If the index or search pattern are empty, return an empty result.
        // Especially performing the lexicon search with an empty pattern
        // would not be funny, as it would effectively search for double EOS,
        // which is very frequent in the index.
        MatchedPatternFragment result(0, 0);
        return result;
    }
}

std::vector<AnubisSearchResult> Concordia::anubisSearch(
                                    const std::string & pattern) {
    if (_T->size() > 0) {
        return _searcher->anubisSearch(_config, _hashGenerator, _T,
                                       _markers, _SA, pattern);
    } else {
        std::vector<AnubisSearchResult> result;
        return result;
    }
}

boost::shared_ptr<ConcordiaSearchResult> Concordia::concordiaSearch(
                                             const std::string & pattern,
                                             bool byWhitespace) {
    if (_T->size() > 0) {
        return _searcher->concordiaSearch(_hashGenerator, _T,
                                       _markers, _SA, pattern, byWhitespace);
    } else {
        std::string empty;
        return boost::shared_ptr<ConcordiaSearchResult>(
            new ConcordiaSearchResult(TokenizedSentence(empty)));
    }
}

void Concordia::clearIndex() {
    _hashGenerator->clearWordMap();
    _T = boost::shared_ptr<std::vector<sauchar_t> >(
                                                  new std::vector<sauchar_t>);
    _markers = boost::shared_ptr<std::vector<SUFFIX_MARKER_TYPE> >(
                                         new std::vector<SUFFIX_MARKER_TYPE>);
    _SA = boost::shared_ptr<std::vector<saidx_t> >(
                                            new std::vector<saidx_t>);

    boost::filesystem::remove(_getHashedIndexFilePath());
    boost::filesystem::remove(_getMarkersFilePath());
}

std::string Concordia::_getWordMapFilePath() {
    return _indexPath+"/"+WORD_MAP_FILE_NAME;
}

std::string Concordia::_getHashedIndexFilePath() {
    return _indexPath+"/"+HASHED_INDEX_FILE_NAME;
}

std::string Concordia::_getMarkersFilePath() {
    return _indexPath+"/"+MARKERS_FILE_NAME;
}