From 2a3c7eddfed609d704fae5028cf9e3a81252dae1 Mon Sep 17 00:00:00 2001
From: rjawor <rjawor@amu.edu.pl>
Date: Tue, 24 Jun 2014 18:33:02 +0200
Subject: [PATCH] anubis search suspended

Former-commit-id: 1e73eb108ea6961bb8306aed3c0bbaf9127f3c69
---
 concordia/anubis_searcher.cpp | 39 +++++++++++++++--------------------
 concordia/common/utils.cpp    |  9 +++-----
 concordia/common/utils.hpp    |  3 ++-
 3 files changed, 22 insertions(+), 29 deletions(-)

diff --git a/concordia/anubis_searcher.cpp b/concordia/anubis_searcher.cpp
index 8f389c7..8725d64 100644
--- a/concordia/anubis_searcher.cpp
+++ b/concordia/anubis_searcher.cpp
@@ -24,39 +24,34 @@ boost::ptr_vector<AnubisSearchResult> AnubisSearcher::anubisSearch(
                 boost::shared_ptr<std::vector<INDEX_CHARACTER_TYPE> > pattern)
                                                 throw(ConcordiaException) {
     boost::ptr_vector<AnubisSearchResult> result;
-    
+
     boost::shared_ptr<std::vector<sauchar_t> > patternVector =
         Utils::indexVectorToSaucharVector(pattern);
-    
-    if (patternVector->size() != pattern->size() * sizeof(INDEX_CHARACTER_TYPE)) {
-        throw ConcordiaException("Increasing pattern resolution went wrong.");
-    } 
 
-    
+    if (patternVector->size() !=
+        pattern->size() * sizeof(INDEX_CHARACTER_TYPE)) {
+        throw ConcordiaException("Increasing pattern resolution went wrong.");
+    }
+
     TmMatchesMap tmMatchesMap;
-    for (int offset = 0;offset < pattern->size(); offset++) {
+    for (int offset = 0; offset < pattern->size(); offset++) {
         int highResOffset = offset * sizeof(INDEX_CHARACTER_TYPE);
         boost::shared_ptr<std::vector<sauchar_t> > currentPattern =
-            boost::shared_ptr<std::vector<sauchar_t> >(new std::vector<sauchar_t>(
-            patternVector->begin()+highResOffset,patternVector->end()));
+            boost::shared_ptr<std::vector<sauchar_t> >
+            (new std::vector<sauchar_t>(
+            patternVector->begin()+highResOffset, patternVector->end()));
         SUFFIX_MARKER_TYPE longestPrefixesLength;
-        boost::ptr_vector<SubstringOccurence> longestPrefixes = lcpSearch(T, markers, SA,
-                                                 currentPattern, longestPrefixesLength);
+        boost::ptr_vector<SubstringOccurence> longestPrefixes =
+            lcpSearch(T, markers, SA, currentPattern, longestPrefixesLength);
 
         BOOST_FOREACH(SubstringOccurence & occurence, longestPrefixes) {
-            TmMatchesMapIterator mapIterator = tmMatchesMap.find(occurence.getId());
-            if(mapIterator != tmMatchesMap.end()) {
-
-            } else {
-            
-            }   
+            TmMatchesMapIterator mapIterator = tmMatchesMap.find(
+                occurence.getId());
+            if (mapIterator != tmMatchesMap.end()) {
+            }
         }
+    }
 
-        
-        
-        
-    }    
-        
     return result;
 }
 
diff --git a/concordia/common/utils.cpp b/concordia/common/utils.cpp
index 7ae58cc..fa0edb7 100644
--- a/concordia/common/utils.cpp
+++ b/concordia/common/utils.cpp
@@ -44,10 +44,9 @@ sauchar_t * Utils::indexVectorToSaucharArray(
 
 boost::shared_ptr<std::vector<sauchar_t> > Utils::indexVectorToSaucharVector(
                      boost::shared_ptr<vector<INDEX_CHARACTER_TYPE> > input) {
-    
-    boost::shared_ptr<std::vector<sauchar_t> > result = boost::shared_ptr<std::vector<sauchar_t> >(
-                                                    new std::vector<sauchar_t>);
-                                                    
+    boost::shared_ptr<std::vector<sauchar_t> > result =
+        boost::shared_ptr<std::vector<sauchar_t> >(new std::vector<sauchar_t>);
+
     for (vector<INDEX_CHARACTER_TYPE>::iterator it = input->begin();
                                           it != input->end(); ++it) {
         appendCharToSaucharVector(result, *it);
@@ -71,6 +70,4 @@ void Utils::_insertCharToSaucharArray(sauchar_t * array,
         array[i] = characterArray[i-pos];
     }
 }
-             
-
 
diff --git a/concordia/common/utils.hpp b/concordia/common/utils.hpp
index 4fc3897..a100af0 100644
--- a/concordia/common/utils.hpp
+++ b/concordia/common/utils.hpp
@@ -34,7 +34,8 @@ public:
     static sauchar_t * indexVectorToSaucharArray(
                        boost::shared_ptr<vector<INDEX_CHARACTER_TYPE> > input);
 
-    static boost::shared_ptr<std::vector<sauchar_t> > indexVectorToSaucharVector(
+    static boost::shared_ptr<std::vector<sauchar_t> >
+                   indexVectorToSaucharVector(
                        boost::shared_ptr<vector<INDEX_CHARACTER_TYPE> > input);
 
     static void appendCharToSaucharVector(