From d5e692ebfd0483dcbe87a775b7aad968f4990909 Mon Sep 17 00:00:00 2001
From: rjawor <rjawor@amu.edu.pl>
Date: Tue, 11 Mar 2014 14:29:30 +0100
Subject: [PATCH] Anubis search stub

Former-commit-id: 4d8c76f85afbe910daca69e695c86165c32adbd8
---
 concordia/CMakeLists.txt     |  6 ++++++
 concordia/index_searcher.cpp | 10 ++++++++++
 concordia/index_searcher.hpp |  8 ++++++++
 concordia/t/CMakeLists.txt   |  2 ++
 4 files changed, 26 insertions(+)

diff --git a/concordia/CMakeLists.txt b/concordia/CMakeLists.txt
index d86835d..727f9a1 100644
--- a/concordia/CMakeLists.txt
+++ b/concordia/CMakeLists.txt
@@ -6,6 +6,9 @@ foreach(dir ${ALL_DIRECTORIES})
 endforeach(dir)
 
 add_library(concordia SHARED
+  interval.cpp
+  tm_matches.cpp
+  anubis_search_result.cpp
   substring_occurence.cpp
   example.cpp
   index_searcher.cpp
@@ -24,6 +27,9 @@ add_subdirectory(t)
 
 install(TARGETS concordia DESTINATION lib/)
 install(FILES 
+          interval.hpp
+          tm_matches.hpp
+          anubis_search_result.hpp
           substring_occurence.hpp
           example.hpp
           index_searcher.hpp
diff --git a/concordia/index_searcher.cpp b/concordia/index_searcher.cpp
index d88efbe..0f232d1 100644
--- a/concordia/index_searcher.cpp
+++ b/concordia/index_searcher.cpp
@@ -37,6 +37,7 @@ boost::ptr_vector<SubstringOccurence> IndexSearcher::simpleSearch(
             saidx_t actualResultPos = resultPos / sizeof(INDEX_CHARACTER_TYPE);
             SUFFIX_MARKER_TYPE marker = markers->at(actualResultPos);
 
+            //TODO think about using bitwise operators in the below code
             result.push_back(new SubstringOccurence(
                 marker / SUFFIX_MARKER_DIVISOR,
                 marker % SUFFIX_MARKER_DIVISOR));
@@ -47,3 +48,12 @@ boost::ptr_vector<SubstringOccurence> IndexSearcher::simpleSearch(
     return result;
 }
 
+boost::ptr_vector<AnubisSearchResult> IndexSearcher::anubisSearch(
+                  boost::shared_ptr<HashGenerator> hashGenerator,
+                  boost::shared_ptr<std::vector<sauchar_t> > T,
+                  boost::shared_ptr<std::vector<SUFFIX_MARKER_TYPE> > markers,
+                  boost::shared_ptr<std::vector<saidx_t> > SA,
+                  const string & pattern) throw(ConcordiaException) {
+    boost::ptr_vector<AnubisSearchResult> result;
+    return result;
+}
diff --git a/concordia/index_searcher.hpp b/concordia/index_searcher.hpp
index 74d2257..906eccc 100644
--- a/concordia/index_searcher.hpp
+++ b/concordia/index_searcher.hpp
@@ -10,6 +10,7 @@
 #include "concordia/substring_occurence.hpp"
 #include "concordia/hash_generator.hpp"
 #include "concordia/concordia_exception.hpp"
+#include "concordia/anubis_search_result.hpp"
 
 #include "divsufsort.h"
 
@@ -34,6 +35,13 @@ public:
                     boost::shared_ptr<std::vector<SUFFIX_MARKER_TYPE> > markers,
                     boost::shared_ptr<std::vector<saidx_t> > SA,
                     const string & pattern) throw(ConcordiaException);
+
+    boost::ptr_vector<AnubisSearchResult> anubisSearch(
+                    boost::shared_ptr<HashGenerator> hashGenerator,
+                    boost::shared_ptr<std::vector<sauchar_t> > T,
+                    boost::shared_ptr<std::vector<SUFFIX_MARKER_TYPE> > markers,
+                    boost::shared_ptr<std::vector<saidx_t> > SA,
+                    const string & pattern) throw(ConcordiaException);
 private:
 };
 
diff --git a/concordia/t/CMakeLists.txt b/concordia/t/CMakeLists.txt
index bbb2a9a..867112f 100644
--- a/concordia/t/CMakeLists.txt
+++ b/concordia/t/CMakeLists.txt
@@ -1,4 +1,6 @@
 add_library(concordia-tests
+  test_tm_matches.cpp
+  test_interval.cpp
   test_logging.cpp
   test_utils.cpp
   test_word_map.cpp