61 lines
1.2 KiB
C++
61 lines
1.2 KiB
C++
#ifndef TM_MATCHES_HDR
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#define TM_MATCHES_HDR
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#include <string>
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#include "concordia/common/config.hpp"
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#include "concordia/interval.hpp"
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#include <boost/ptr_container/ptr_vector.hpp>
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/*!
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Class used within Anubis search algorithm to store partial results.
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*/
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using namespace std;
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class TmMatches {
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public:
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explicit TmMatches(const SUFFIX_MARKER_TYPE exampleId,
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const unsigned char exampleSize,
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const unsigned char patternSize);
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/*! Destructor.
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*/
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virtual ~TmMatches();
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double getScore() const {
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return _score;
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}
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SUFFIX_MARKER_TYPE getExampleId() const {
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return _exampleId;
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}
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void calculateSimpleScore();
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void calculateScore();
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void addExampleInterval(int start, int end);
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void addPatternInterval(int start, int end);
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private:
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bool _alreadyIntersects(boost::ptr_vector<Interval> intervalList,
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int start, int end);
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SUFFIX_MARKER_TYPE _exampleId;
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boost::ptr_vector<Interval> _exampleMatchedRegions;
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boost::ptr_vector<Interval> _patternMatchedRegions;
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unsigned char _patternSize;
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unsigned char _exampleSize;
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double _score;
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};
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#endif
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