en-ner-conll-2003/main.py

from os import sep
from nltk import word_tokenize
import pandas as pd
import torch
from torch._C import device
from tqdm import tqdm
from torchtext.vocab import vocab
from collections import Counter, OrderedDict
import spacy
from torchcrf import CRF
from torch.utils.data import DataLoader
import numpy as np
from sklearn.metrics import accuracy_score, f1_score, classification_report
import csv
import pickle

class Model(torch.nn.Module):
    def __init__(self, num_tags, seq_length):
        super(Model, self).__init__()
        self.emb = torch.nn.Embedding(len(vocab.get_itos()), 100)
        self.gru = torch.nn.GRU(100, 256, 1, batch_first=True)
        self.hidden2tag = torch.nn.Linear(256, 9)
        self.crf = CRF(num_tags, batch_first=True)
        self.relu = torch.nn.ReLU()
        self.fc1 = torch.nn.Linear(1, seq_length)
        self.softmax = torch.nn.Softmax(dim=0)
        self.sigm = torch.nn.Sigmoid()

    def forward(self, data, tags):
        emb = self.relu(self.emb(data))
        out, h_n = self.gru(emb)
        out = self.hidden2tag(out)
        out = self.crf(out, tags.T)
        return -out

    def decode(self, data):
        emb = self.relu(self.emb(data))
        out, h_n = self.gru(emb)
        out = self.hidden2tag(out)
        out = self.crf.decode(out)
        return out

    def train_mode(self):
        self.crf.train()
    
    def eval_mode(self):
        self.crf.eval()


def process_document(document):
    return document.split(" ")

def build_vocab(dataset):
    counter = Counter()
    for document in dataset:
        counter.update(process_document(document))
    sorted_by_freq_tuples = sorted(counter.items(), key=lambda x: x[1], reverse=True)
    ordered_dict = OrderedDict(sorted_by_freq_tuples)
    v = vocab(counter)
    default_index = 0
    v.set_default_index(default_index)
    return v

def data_process(dt):
    return [ torch.tensor([vocab[token]  for token in  document.split(" ") ], dtype = torch.long) for document in dt]

def labels_process(dt):
    return [ torch.tensor([labels_vocab[token]  for token in  document.split(" ") ], dtype = torch.long) for document in dt]

# mode = "train"
# mode = "eval"
mode = "generate"

save_path = "test-A/out.tsv"

# data = pd.read_csv("dev-0/in.tsv", sep="\t", names=['0'])
# data.columns = ["labels", "text"]

train_target = pd.read_csv("train/train.tsv", sep = '\t', names = ['labels', 'data'])

# ex_data = pd.read_csv("dev-0/expected.tsv", sep="\t", names=['labels'])

# in_data = data["0"]
# target = ex_data["labels"]

test_data = pd.read_csv("test-A/in.tsv", sep = '\t', names=['0'])
# test_data.columns = ['0']
# data = test_data['0']
in_data = test_data['0']
# target = list(np.zeros(len(in_data)))
target = train_target['labels']

# labels_vocab = build_vocab(data['labels'])
if mode == "train":
    vocab = build_vocab(in_data)
    with open("vocab.pickle", "wb") as file:
        pickle.dump(vocab, file)
    print("Vocab saved")
else:
    with open("vocab.pickle", "rb") as file:
        vocab = pickle.load(file)

labels_vocab = {
    'O': 0,
    'B-PER': 1,
    'B-LOC': 2,
    'I-PER': 3,
    'B-MISC': 4,
    'I-MISC': 5,
    'I-LOC': 6,
    'B-ORG': 7,
    'I-ORG': 8
}

inv_labels_vocab = {v: k for k, v in labels_vocab.items()}

train_tokens_ids = data_process(in_data)
train_labels = labels_process(target)

num_tags = 9
NUM_EPOCHS = 5
seq_length = 5

model = Model(num_tags, seq_length)
device = torch.device("cpu")
model.to(device)
# model.cuda(0)

if mode == "train": 
    criterion = torch.nn.CrossEntropyLoss()
    optimizer = torch.optim.Adam(model.parameters())
    for i in range(NUM_EPOCHS):
        model.train()
        model.train_mode()
        #for i in tqdm(range(500)):
        for i in tqdm(range(len(train_labels))):
            for k in range(0, len(train_tokens_ids[i]) - seq_length, seq_length):
                batch_tokens = train_tokens_ids[i][k: k + seq_length].unsqueeze(0)
                tags = train_labels[i][k: k + seq_length].unsqueeze(1)
                
                predicted_tags = model(batch_tokens.to(device), tags.to(device))

                predicted_tags.backward()
                optimizer.step()
                model.zero_grad()
                model.crf.zero_grad()
                optimizer.zero_grad()

    torch.save(model.state_dict(), "model.torch")

if mode == "eval" or mode == "generate":
    model.eval()
    model.eval_mode()
    predicted = []
    correct = []
    model.load_state_dict(torch.load("model.torch"))
    for i in tqdm(range(0, len(train_tokens_ids))):
        last_idx = 0
        for k in range(0, len(train_tokens_ids[i]) - seq_length, seq_length):
            batch_tokens = train_tokens_ids[i][k: k + seq_length].unsqueeze(0)
            tags = train_labels[i][k: k + seq_length].unsqueeze(1)
            predicted_tags = model.decode(batch_tokens.to(device))
            predicted += predicted_tags[0]
            correct += [x[0] for x in tags.numpy().tolist()]
            last_idx = k
        l = len(train_tokens_ids[i])
        rest = l - int(l/seq_length) * seq_length
        if rest != 0:
            batch_tokens = train_tokens_ids[i][last_idx: last_idx + rest].unsqueeze(0)
            tags = train_labels[i][last_idx: last_idx + rest].unsqueeze(1)
            predicted_tags = model.decode(batch_tokens.to(device))
            predicted += predicted_tags[0]
            correct += [x[0] for x in tags.numpy().tolist()]

    if mode == "eval":
        print(classification_report(correct, predicted))
        print(accuracy_score(correct, predicted))
        print(f1_score(correct, predicted, average="weighted"))
    
    predicted = list(map(lambda x: inv_labels_vocab[x], predicted))
    slices = [len(x.split(" ")) for x in in_data]
    with open(save_path, "w") as save:
        writer = csv.writer(save, delimiter='\t', lineterminator='\n')
        accumulator = 0
        for slice in slices:
            writer.writerow([' '.join(predicted[accumulator: accumulator + slice])])
            accumulator += slice - 1