From b7fae1381dfa6ecfc9b101090e81566e5d51efd0 Mon Sep 17 00:00:00 2001 From: s416178 Date: Fri, 3 Apr 2020 14:01:19 +0200 Subject: [PATCH] update --- shell_script.sh | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/shell_script.sh b/shell_script.sh index 1244639..7ff3ab8 100644 --- a/shell_script.sh +++ b/shell_script.sh @@ -5,6 +5,12 @@ wc -l $1 > result.log cut -f 2 $1 > hypothesis.txt cut -f 3 $1 > reference.txt +mv wer.txt wer1.txt +mv srr.txt srr1.txt + +cat wer1.txt | tail -n 499 > wer.txt +cat srr1.txt | tail -n 499 > srr.txt + awk 'BEGIN{FS=OFS="\t"}{print $0,"(sp1_"NR")"}' < hypothesis.txt > hypothesis.trn awk 'BEGIN{FS=OFS="\t"}{print $0,"(sp1_"NR")"}' < reference.txt > reference.trn @@ -13,6 +19,3 @@ awk 'BEGIN{OFS="\t"}{print $6, $7, $8, $9}' < scores | awk '{ print ($2 + $3 + $ awk 'BEGIN{FS=OFS="\t"}{ bad = bad + $1; all++ }END{ print bad/all }' < wer.tsv >> wer.txt awk 'BEGIN{FS=OFS="\t"}{ if ( $1 == 0 ) good++; all++ }END{ print good/all }' < wer.tsv >> srr.txt - -cat wer.txt | tail -n 500 > wer.txt -cat srr.txt | tail -n 500 > srr.txt