TAK-65

app/calculator.R

@@ -16,7 +16,8 @@ calculatorUI <- function(id){
       sliderInput("slider2", strong("Największa średnica elementu stałego (w mm):"),min = 0, max = 200, value = 0),
       selectInput("select3",strong("Nieregularna wewnętrzna ściana torbieli:"),choices = list("Nie"=0,"Tak"=1),selected=0),
       selectInput("select4",strong("Obecność cieni akustycznych:"),choices = list("Nie"=0,"Tak"=1),selected=0),
-      actionButton("update" ,"Oblicz")
+      actionButton("update" ,"Oblicz"),
+      downloadButton("report", "Generuj raport")
     ),
     
     mainPanel(
@@ -36,6 +37,36 @@ calculatorUI <- function(id){
 
 calculatorServer <- function(input, output, session) {
   
+  
+  output$report <- downloadHandler(
+    # For PDF output, change this to "report.pdf"
+    filename = "raport.pdf",
+    content = function(file) {
+      # Copy the report file to a temporary directory before processing it, in
+      # case we don't have write permissions to the current working dir (which
+      # can happen when deployed).
+      tempReport <- file.path(tempdir(), "report.Rmd")
+      file.copy("report.Rmd", tempReport, overwrite = TRUE)
+      
+      # Set up parameters to pass to Rmd document
+      p=0
+      if(as.numeric(input$slider2)>=50){
+        p=50
+      }
+      z=-5.3718+0.0354*as.numeric(input$slider1)+1.6159*as.numeric(input$select1)+1.1768*as.numeric(input$select2)+0.0697*p+0.9586*as.numeric(input$select3)-2.9486*as.numeric(input$select4)
+      x=round(1/(1+exp(-z)),3)
+      params <- list(n = input$slider1,k=input$slider2,l=input$select1,m=input$select2,p=input$select3,r=input$select4,z=x,y=)
+      
+      # Knit the document, passing in the `params` list, and eval it in a
+      # child of the global environment (this isolates the code in the document
+      # from the code in this app).
+      rmarkdown::render(tempReport, output_file = file,
+                        params = params,
+                        envir = new.env(parent = globalenv())
+      )
+    }
+  )
+
   output$selected_var <- renderText({
     input$update
     p=0

app/report.Rmd

@@ -0,0 +1,45 @@
+---
+title: "Dynamiczny raport"
+output: pdf_document
+params:
+  n: NA
+  k: NA
+  l: NA
+  m: NA
+  p: NA
+  r: NA
+  z: NA
+  y: NA
+---
+
+Wiek pacjenta(w latach):
+`r params$n`
+
+Największa średnica elementu stałego (w mm): `r params$k` 
+
+Obecność wodobrzusza:
+```{r, echo=FALSE}
+if(params$l==1) {print("Tak")}else {print("Nie")}
+```
+
+Obecność przepływu krwi w projekcji brodawkowatej:
+```{r, echo=FALSE}
+if(params$m==1) {print("Tak")}else {print("Nie")}
+```
+Nieregularna wewnętrzna ściana torbieli:
+```{r, echo=FALSE}
+if(params$p==1) {print("Tak")}else {print("Nie")}
+```
+Obecność cieni akustycznych:
+```{r, echo=FALSE}
+if(params$r==1) {print("Tak")}else {print("Nie")}
+```
+Surowa wartość predyktora:
+```{r, echo=FALSE}
+params$z
+```
+Klasa guza: 
+```{r, echo=FALSE}
+if(params$z>0.1){print("złośliwy")}else{print("łagodny")}
+```
+Próg złośliwości: 0.1

app/report.aux

@@ -0,0 +1,19 @@
+\relax 
+\providecommand\hyper@newdestlabel[2]{}
+\providecommand\BKM@entry[2]{}
+\providecommand\HyperFirstAtBeginDocument{\AtBeginDocument}
+\HyperFirstAtBeginDocument{\ifx\hyper@anchor\@undefined
+\global\let\oldcontentsline\contentsline
+\gdef\contentsline#1#2#3#4{\oldcontentsline{#1}{#2}{#3}}
+\global\let\oldnewlabel\newlabel
+\gdef\newlabel#1#2{\newlabelxx{#1}#2}
+\gdef\newlabelxx#1#2#3#4#5#6{\oldnewlabel{#1}{{#2}{#3}}}
+\AtEndDocument{\ifx\hyper@anchor\@undefined
+\let\contentsline\oldcontentsline
+\let\newlabel\oldnewlabel
+\fi}
+\fi}
+\global\let\hyper@last\relax 
+\gdef\HyperFirstAtBeginDocument#1{#1}
+\providecommand\HyField@AuxAddToFields[1]{}
+\providecommand\HyField@AuxAddToCoFields[2]{}

backend/.idea/workspace.xml

@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
+  <component name="AutoImportSettings">
+    <option name="autoReloadType" value="SELECTIVE" />
+  </component>
   <component name="ChangeListManager">
     <list default="true" id="2f11f4d5-1593-4266-846c-71ac633cf58a" name="Default" comment="">
-      <change beforePath="$PROJECT_DIR$/../app/app.R" beforeDir="false" afterPath="$PROJECT_DIR$/../app/app.R" afterDir="false" />
+      <change beforePath="$PROJECT_DIR$/../app/calculator.R" beforeDir="false" afterPath="$PROJECT_DIR$/../app/calculator.R" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/../app/login_module.R" beforeDir="false" afterPath="$PROJECT_DIR$/../app/login_module.R" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/../app/profil_module.R" beforeDir="false" afterPath="$PROJECT_DIR$/../app/profil_module.R" afterDir="false" />
-      <change beforePath="$PROJECT_DIR$/../app/www/style.css" beforeDir="false" afterPath="$PROJECT_DIR$/../app/www/style.css" afterDir="false" />
     </list>
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
@@ -26,6 +26,13 @@
   <component name="Git.Settings">
     <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$/.." />
   </component>
+  <component name="MavenImportPreferences">
+    <option name="generalSettings">
+      <MavenGeneralSettings>
+        <option name="mavenHome" value="C:\software\intellij_idea\plugins\maven\lib\maven3" />
+      </MavenGeneralSettings>
+    </option>
+  </component>
   <component name="ProjectCodeStyleSettingsMigration">
     <option name="version" value="1" />
   </component>
@@ -33,35 +40,22 @@
   <component name="ProjectLevelVcsManager" settingsEditedManually="true" />
   <component name="ProjectViewState">
     <option name="hideEmptyMiddlePackages" value="true" />
-    <option name="showExcludedFiles" value="true" />
     <option name="showLibraryContents" value="true" />
   </component>
   <component name="PropertiesComponent">
+    <property name="RunOnceActivity.OpenProjectViewOnStart" value="true" />
     <property name="RunOnceActivity.ShowReadmeOnStart" value="true" />
+    <property name="WebServerToolWindowFactoryState" value="false" />
+    <property name="aspect.path.notification.shown" value="true" />
     <property name="last_opened_file_path" value="$PROJECT_DIR$" />
-    <property name="project.structure.last.edited" value="Modules" />
+    <property name="project.structure.last.edited" value="Project" />
     <property name="project.structure.proportion" value="0.15" />
     <property name="project.structure.side.proportion" value="0.2" />
     <property name="settings.editor.selected.configurable" value="project.propVCSSupport.Mappings" />
   </component>
-  <component name="RunManager" selected="Application.TakeCareApp">
+  <component name="RunManager">
-    <configuration name="TASProjectApp" type="Application" factoryName="Application" temporary="true" nameIsGenerated="true">
+    <configuration name="TakeCareApp" type="Application" factoryName="Application" nameIsGenerated="true">
-      <option name="MAIN_CLASS_NAME" value="project.TASProjectApp" />
+      <option name="ALTERNATIVE_JRE_PATH" value="11" />
-      <module name="TAS_Project" />
-      <option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
-      <extension name="coverage">
-        <pattern>
-          <option name="PATTERN" value="project.*" />
-          <option name="ENABLED" value="true" />
-        </pattern>
-      </extension>
-      <method v="2">
-        <option name="Make" enabled="true" />
-      </method>
-    </configuration>
-    <configuration name="TakeCareApp" type="Application" factoryName="Application" temporary="true" nameIsGenerated="true">
-      <option name="ALTERNATIVE_JRE_PATH" value="1.8" />
-      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="true" />
       <option name="MAIN_CLASS_NAME" value="project.TakeCareApp" />
       <module name="backend" />
       <extension name="coverage">
@@ -80,6 +74,19 @@
         <option name="Make" enabled="true" />
       </method>
     </configuration>
+    <configuration default="true" type="ArquillianTestNG" factoryName="" nameIsGenerated="true">
+      <option name="arquillianRunConfiguration">
+        <value>
+          <option name="containerStateName" value="" />
+        </value>
+      </option>
+      <option name="TEST_OBJECT" value="CLASS" />
+      <properties />
+      <listeners />
+      <method v="2">
+        <option name="Make" enabled="true" />
+      </method>
+    </configuration>
     <configuration default="true" type="JUnit" factoryName="JUnit">
       <option name="TEST_OBJECT" value="class" />
       <option name="WORKING_DIRECTORY" value="%MODULE_WORKING_DIR%" />
@@ -87,7 +94,7 @@
         <option name="Make" enabled="true" />
       </method>
     </configuration>
-    <configuration default="true" type="JetRunConfigurationType" factoryName="Kotlin">
+    <configuration default="true" type="JetRunConfigurationType">
       <module name="TakeCareApp_Backend" />
       <option name="VM_PARAMETERS" />
       <option name="PROGRAM_PARAMETERS" />
@@ -100,7 +107,7 @@
         <option name="Make" enabled="true" />
       </method>
     </configuration>
-    <configuration default="true" type="KotlinStandaloneScriptRunConfigurationType" factoryName="Kotlin script">
+    <configuration default="true" type="KotlinStandaloneScriptRunConfigurationType">
       <module name="TakeCareApp_Backend" />
       <option name="filePath" />
       <option name="vmParameters" />
@@ -143,13 +150,8 @@
         <option name="Make" enabled="true" />
       </method>
     </configuration>
-    <recent_temporary>
-      <list>
-        <item itemvalue="Application.TakeCareApp" />
-        <item itemvalue="Application.TASProjectApp" />
-      </list>
-    </recent_temporary>
   </component>
+  <component name="SpellCheckerSettings" RuntimeDictionaries="0" Folders="0" CustomDictionaries="0" DefaultDictionary="application-level" UseSingleDictionary="true" transferred="true" />
   <component name="SvnConfiguration">
     <configuration />
   </component>
@@ -160,6 +162,8 @@
       <option name="number" value="Default" />
       <option name="presentableId" value="Default" />
       <updated>1538657724296</updated>
+      <workItem from="1608588877099" duration="112000" />
+      <workItem from="1608589030964" duration="1942000" />
     </task>
     <servers />
   </component>
@@ -172,15 +176,30 @@
       <is-autoscroll-to-source value="true" />
     </todo-panel>
   </component>
+  <component name="TypeScriptGeneratedFilesManager">
+    <option name="version" value="3" />
+  </component>
   <component name="WindowStateProjectService">
+    <state x="249" y="0" key="#Project_Structure" timestamp="1608590116186">
+      <screen x="0" y="0" width="1536" height="824" />
+    </state>
+    <state x="249" y="0" key="#Project_Structure/0.0.1536.824@0.0.1536.824" timestamp="1608590116186" />
     <state x="357" y="150" width="584" height="683" key="#TakeCareApp" timestamp="1608415357147">
       <screen x="0" y="0" width="1280" height="984" />
     </state>
     <state x="357" y="150" width="584" height="683" key="#TakeCareApp/0.0.1280.984@0.0.1280.984" timestamp="1608415357147" />
+    <state x="223" y="0" width="1089" height="824" key="#com.intellij.execution.impl.EditConfigurationsDialog" timestamp="1608590123302">
+      <screen x="0" y="0" width="1536" height="824" />
+    </state>
+    <state x="223" y="0" width="1089" height="824" key="#com.intellij.execution.impl.EditConfigurationsDialog/0.0.1536.824@0.0.1536.824" timestamp="1608590123302" />
     <state x="445" y="208" key="#com.intellij.ide.util.MemberChooser" timestamp="1608284675573">
       <screen x="0" y="0" width="1280" height="984" />
     </state>
     <state x="445" y="208" key="#com.intellij.ide.util.MemberChooser/0.0.1280.984@0.0.1280.984" timestamp="1608284675573" />
+    <state x="498" y="221" key="#com.intellij.ide.util.TreeClassChooserDialog" timestamp="1608589130374">
+      <screen x="0" y="0" width="1536" height="824" />
+    </state>
+    <state x="498" y="221" key="#com.intellij.ide.util.TreeClassChooserDialog/0.0.1536.824@0.0.1536.824" timestamp="1608589130374" />
     <state x="515" y="359" key="#com.intellij.ide.util.projectWizard.JdkChooserPanel.MyDialog" timestamp="1608416401063">
       <screen x="0" y="0" width="1280" height="984" />
     </state>
@@ -190,26 +209,31 @@
       <screen x="0" y="0" width="1280" height="984" />
     </state>
     <state x="370" y="239" key="#com.intellij.refactoring.safeDelete.UnsafeUsagesDialog/0.0.1280.984@0.0.1280.984" timestamp="1608284351336" />
-    <state x="420" y="247" key="FileChooserDialogImpl" timestamp="1608416486787">
+    <state x="504" y="207" key="FileChooserDialogImpl" timestamp="1608588987971">
-      <screen x="0" y="0" width="1280" height="984" />
+      <screen x="0" y="0" width="1536" height="824" />
     </state>
     <state x="420" y="247" key="FileChooserDialogImpl/0.0.1280.984@0.0.1280.984" timestamp="1608416486787" />
-    <state width="1237" height="144" key="GridCell.Tab.0.bottom" timestamp="1608474806471">
+    <state x="504" y="207" key="FileChooserDialogImpl/0.0.1536.824@0.0.1536.824" timestamp="1608588987971" />
-      <screen x="0" y="0" width="1280" height="984" />
+    <state width="1416" height="195" key="GridCell.Tab.0.bottom" timestamp="1608591962773">
+      <screen x="0" y="0" width="1536" height="824" />
     </state>
     <state width="1237" height="144" key="GridCell.Tab.0.bottom/0.0.1280.984@0.0.1280.984" timestamp="1608474806471" />
-    <state width="1237" height="144" key="GridCell.Tab.0.center" timestamp="1608474806471">
+    <state width="1416" height="195" key="GridCell.Tab.0.bottom/0.0.1536.824@0.0.1536.824" timestamp="1608591962773" />
-      <screen x="0" y="0" width="1280" height="984" />
+    <state width="1416" height="195" key="GridCell.Tab.0.center" timestamp="1608591962773">
+      <screen x="0" y="0" width="1536" height="824" />
     </state>
     <state width="1237" height="144" key="GridCell.Tab.0.center/0.0.1280.984@0.0.1280.984" timestamp="1608474806471" />
-    <state width="1237" height="144" key="GridCell.Tab.0.left" timestamp="1608474806471">
+    <state width="1416" height="195" key="GridCell.Tab.0.center/0.0.1536.824@0.0.1536.824" timestamp="1608591962773" />
-      <screen x="0" y="0" width="1280" height="984" />
+    <state width="1416" height="195" key="GridCell.Tab.0.left" timestamp="1608591962773">
+      <screen x="0" y="0" width="1536" height="824" />
     </state>
     <state width="1237" height="144" key="GridCell.Tab.0.left/0.0.1280.984@0.0.1280.984" timestamp="1608474806471" />
-    <state width="1237" height="144" key="GridCell.Tab.0.right" timestamp="1608474806471">
+    <state width="1416" height="195" key="GridCell.Tab.0.left/0.0.1536.824@0.0.1536.824" timestamp="1608591962773" />
-      <screen x="0" y="0" width="1280" height="984" />
+    <state width="1416" height="195" key="GridCell.Tab.0.right" timestamp="1608591962773">
+      <screen x="0" y="0" width="1536" height="824" />
     </state>
     <state width="1237" height="144" key="GridCell.Tab.0.right/0.0.1280.984@0.0.1280.984" timestamp="1608474806471" />
+    <state width="1416" height="195" key="GridCell.Tab.0.right/0.0.1536.824@0.0.1536.824" timestamp="1608591962773" />
     <state x="231" y="66" key="SettingsEditor" timestamp="1608416474275">
       <screen x="0" y="0" width="1280" height="984" />
     </state>
@@ -220,4 +244,9 @@
     </state>
     <state x="336" y="316" key="com.intellij.ide.util.TipDialog/0.0.1280.984@0.0.1280.984" timestamp="1608473085786" />
   </component>
+  <component name="com.intellij.coverage.CoverageDataManagerImpl">
+    <SUITE FILE_PATH="coverage/backend$TakeCareApp.ic" NAME="TakeCareApp Coverage Results" MODIFIED="1608590180059" SOURCE_PROVIDER="com.intellij.coverage.DefaultCoverageFileProvider" RUNNER="idea" COVERAGE_BY_TEST_ENABLED="false" COVERAGE_TRACING_ENABLED="false">
+      <FILTER>project.*</FILTER>
+    </SUITE>
+  </component>
 </project>

backend/src/backend.iml

@@ -0,0 +1,11 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<module type="JAVA_MODULE" version="4">
+  <component name="NewModuleRootManager" inherit-compiler-output="true">
+    <exclude-output />
+    <content url="file://$MODULE_DIR$">
+      <sourceFolder url="file://$MODULE_DIR$/main/java" isTestSource="false" />
+    </content>
+    <orderEntry type="inheritedJdk" />
+    <orderEntry type="sourceFolder" forTests="false" />
+  </component>
+</module>