STIDE_OBJECTS = stide.o seq_config.o seq_stream.o template.o flexitree.o

LIBES   = -lm

#FLAGS = -O2 
FLAGS = -g

stide    : $(STIDE_OBJECTS)
	g++ -fno-implicit-templates $(FLAGS) $(STIDE_OBJECTS) $(LIBES) -o stide

template.o : template.cc ../Utils/arrays.h ../Utils/tll.h ../Utils/hash.h ../Utils/tll.cc ../Utils/arrays.cc ../Utils/hash.cc seq_stream.h flexitree.h
	g++ -fno-implicit-templates $(FLAGS) -c template.cc

stide.o : stide.cc ../Utils/arrays.h ../Utils/hash.h seq_stream.h seq_config.h flexitree.h
	g++ -fno-implicit-templates $(FLAGS) -c stide.cc
flexitree.o : flexitree.cc ../Utils/arrays.h flexitree.h
	g++ -fno-implicit-templates $(FLAGS) -c flexitree.cc

seq_config.o : seq_config.cc seq_config.h ../Utils/arrays.h
	g++ -fno-implicit-templates $(FLAGS) -c seq_config.cc

seq_stream.o : seq_stream.cc seq_stream.h seq_config.h flexitree.h ../Utils/arrays.h ../Utils/hash.h
	g++ -fno-implicit-templates $(FLAGS) -c seq_stream.cc