62 lines
2.3 KiB
C++
Executable File
62 lines
2.3 KiB
C++
Executable File
#ifndef __STREAM_H
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#define __STREAM_H
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#include "../Utils/arrays.h"
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#include "seq_config.h"
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#include "flexitree.h"
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class Stream {
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public:
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Stream() {};
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void Init(const Config &cfg, const int intern_id, const int
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extern_id);
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void Append(const int next_value);
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int AddToDB(SeqForest &normal, int &db_size, int total_pairs_read,
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const Config &cfg) const;
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void CompareSeq(const Config &cfg, const SeqForest &normal, const
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int total_pairs_read);
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int GetMaxHDist(void) {return max_hdist;}
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int GetMaxLFC(void) {return max_lfc;}
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int Ready(void) {return ready;}
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int GetNumAnoms(void) {return num_anoms;}
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int GetNumPairsRead(void) {return num_pairs_read;}
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int GetNumSeqsFnd(void) {return num_seqs_fnd;}
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private:
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Array<int> current_seq; // current sequence being filled or
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// processed
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int num_in_seq; // current_seq is full up through
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// num_in_seq
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int num_pairs_read; // the number of input pairs belonging to
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// this stream that have been read so far
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int num_anoms; // the number of anomalies found so far
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int num_seqs_fnd; // the number of (not necessarily unique)
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// sequences belonging to this stream
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// found so far
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int ext_sid; // the external stream id
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int int_sid; // the internal stream id
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int max_hdist; // the largest minimum Hamming distance
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// found in this stream
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int seq_hdist; // the minimum Hamming distance for
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// current_seq
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Array<int> lf; // array for locality frame
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int seq_lfc; // the locality frame count for this
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// sequence
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int max_lfc; // the largest locality frame count
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// encountered so far
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int ready; // a flag to indicate whether this stream
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// has a full sequence ready to be
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// processed. 0 = no, 1 = yes.
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int seq_len; // sequence length
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int ComputeMisses(const SeqForest &normal);
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void ComputeHDist(const SeqForest &normal);
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void ComputeLF(const int is_anom, const int lf_size);
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void ReportSeq(const Config &cfg, const int total_pairs_read,
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const int is_anom) const;
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void ReportNewSeq(const Config &cfg, const int total_pairs_read,
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const int db_size) const;
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};
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#endif
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