73 lines
2.8 KiB
C++
73 lines
2.8 KiB
C++
#ifndef __SEQ_CONFIG_H
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#define __SEQ_CONFIG_H
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#define CFREV 1
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#include <iostream>
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#include <fstream>
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#include <string>
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#include <vector>
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#include "opt_info.h"
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using std::vector;
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using std::ifstream;
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class Config {
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public:
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Config(const int argc, const char *argv[]); // Constructor; reads
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// configuration file and command
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// line arguments
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string cfg_name; // Name of configuration file
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string db_name; // Name of database
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int seq_len; // Sequence Length
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int max_elements; // Maximum number of different
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// data elements we may encounter
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int max_streams; // Maximum number of different
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// streams we may encounter
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int pair_offset; // Number by which to offset
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// num_pairs_read
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string add_output_format; // Format for verbose-mode output
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// when adding to database
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string compare_output_format; // Format for verbose-mode output
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// when comparing with an
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// existing database
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int lf_size; // Size of locality frames: 1
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// effectively means don't
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// compute locality frames
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int add_to_db; // Flag indicating that we should
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// add to the database rather
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// than make comparisons
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int output_graph; // Output graphing information in
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// Dot format
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int compute_hdist; // Compute Hamming distance
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int write_db_stats; // Write statistics about the
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// database
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int verbose; // Output information about each
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// anomaly or each new sequence
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// added to the database
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int very_verbose; // Output information about each
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// sequence encountered
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char fmt_str[10][50]; // String used for outputting
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// information in verbose mode
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char write_val[7]; // Do we write the value? used
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// with fmt_str
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int num_fvars; // Number of format variables
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void Config::InitOptArray(vector<OptInfo> &opt_array);
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void Config::SetDefaults();
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void Config::ReadCommandLine(const int argc, const char *argv[],
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vector<OptInfo> &opt_array);
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void Config::AssignValToVar(vector<OptInfo> &opt_array, const
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string &var_val, const string
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&var_name, const int name_type);
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void Config::ReadConfigFile(vector<OptInfo> &opt_array);
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void Config::ReadOldConfigFile(ifstream &cfg_file,
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vector<OptInfo> &opt_array);
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void Config::InitOutputFormat();
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void Config::CheckValues();
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void Config::OuputConfigInfo(const vector<OptInfo> &opt_array) const;
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void Config::WriteHelpInfo() const;
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};
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#endif
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