Encapsulated a bunch of fields.

git-svn-id: http://google-refine.googlecode.com/svn/trunk@33 7d457c2a-affb-35e4-300a-418c747d4874

src/main/java/com/metaweb/gridworks/ProjectMetadata.java

@@ -11,10 +11,38 @@ import org.json.JSONWriter;
 public class ProjectMetadata implements Serializable, Jsonizable {
 	private static final long serialVersionUID = 7959027046468240844L;
 	
-	public String 	name;
+	private final Date 	_created = new Date();
-	public String 	password;
+	private String 		_name;
-	public Date 	created = new Date();
+	private String 		_password;
-	public Date 	modified = new Date();
+	private Date 		_modified = new Date();
+	
+	public Date getCreated() {
+		return _created;
+	}
+
+	public void setName(String name) {
+		this._name = name;
+	}
+
+	public String getName() {
+		return _name;
+	}
+
+	public void setPassword(String password) {
+		this._password = password;
+	}
+
+	public String getPassword() {
+		return _password;
+	}
+	
+	public Date getModified() {
+		return _modified;
+	}
+	
+	public void updateModified() {
+		_modified = new Date();
+	}
 
 	@Override
 	public void write(JSONWriter writer, Properties options)
@@ -23,9 +51,9 @@ public class ProjectMetadata implements Serializable, Jsonizable {
 		SimpleDateFormat sdf = (SimpleDateFormat) SimpleDateFormat.getDateTimeInstance();
 		
 		writer.object();
-		writer.key("name"); writer.value(name);
+		writer.key("name"); writer.value(getName());
-		writer.key("created"); writer.value(sdf.format(created));
+		writer.key("created"); writer.value(sdf.format(getCreated()));
-		writer.key("modified"); writer.value(sdf.format(modified));
+		writer.key("modified"); writer.value(sdf.format(_modified));
 		writer.endObject();
 	}
 }

src/main/java/com/metaweb/gridworks/browsing/facets/NumericBinIndex.java

@@ -10,16 +10,16 @@ import com.metaweb.gridworks.model.Project;
 import com.metaweb.gridworks.model.Row;
 
 public class NumericBinIndex {
-	public double min;
+	private double _min;
-	public double max;
+	private double _max;
-	public double step;
+	private double _step;
-	public int[]  bins;
+	private int[]  _bins;
 	
 	public NumericBinIndex(Project project, int cellIndex, Evaluable eval) {
 		Properties bindings = new Properties();
 		
-		min = Double.POSITIVE_INFINITY;
+		_min = Double.POSITIVE_INFINITY;
-		max = Double.NEGATIVE_INFINITY;
+		_max = Double.NEGATIVE_INFINITY;
 		
 		List<Double> allValues = new ArrayList<Double>();
 		for (int i = 0; i < project.rows.size(); i++) {
@@ -49,40 +49,55 @@ public class NumericBinIndex {
 			}
 		}
 		
-		if (min >= max) {
+		if (getMin() >= getMax()) {
-			step = 0;
+			_step = 0;
-			bins = new int[0];
+			_bins = new int[0];
 			return;
 		}
 		
-		double diff = max - min;
+		double diff = getMax() - getMin();
+		_step = 1;
 		if (diff > 10) {
-			step = 1;
+			while (getStep() * 100 < diff) {
-			while (step * 100 < diff) {
+				_step *= 10;
-				step *= 10;
 			}
 		} else {
-			step = 1;
+			while (getStep() * 100 > diff) {
-			while (step * 100 > diff) {
+				_step /= 10;
-				step /= 10;
 			}
 		}
 		
-		min = Math.floor(min / step) * step;
+		_min = (Math.floor(_min / _step) * _step);
-		max = Math.ceil(max / step) * step;
+		_max = (Math.ceil(_max / _step) * _step);
 		
-		int binCount = 1 + (int) Math.ceil((max - min) / step);
+		int binCount = 1 + (int) Math.ceil((getMax() - getMin()) / getStep());
 		
-		bins = new int[binCount];
+		_bins = new int[binCount];
 		for (double d : allValues) {
-			int bin = (int) Math.round((d - min) / step);
+			int bin = (int) Math.round((d - getMin()) / getStep());
-			bins[bin]++;
+			getBins()[bin]++;
 		}
 	}
 	
+	public double getMin() {
+		return _min;
+	}
+
+	public double getMax() {
+		return _max;
+	}
+
+	public double getStep() {
+		return _step;
+	}
+
+	public int[] getBins() {
+		return _bins;
+	}
+
 	protected void processValue(double v, List<Double> allValues) {
-		min = Math.min(min, v);
+		_min = Math.min(getMin(), v);
-		max = Math.max(max, v);
+		_max = Math.max(getMax(), v);
 		allValues.add(v);
 	}
 }

src/main/java/com/metaweb/gridworks/browsing/facets/RangeFacet.java

@@ -115,9 +115,9 @@ public class RangeFacet implements Facet {
 			column.setPrecompute(key, index);
 		}
 		
-		_min = index.min;
+		_min = index.getMin();
-		_max = index.max;
+		_max = index.getMax();
-		_step = index.step;
+		_step = index.getStep();
-		_bins = index.bins;
+		_bins = index.getBins();
 	}
 }

src/main/java/com/metaweb/gridworks/browsing/facets/TextSearchFacet.java

@@ -7,11 +7,9 @@ import org.json.JSONObject;
 import org.json.JSONWriter;
 
 import com.metaweb.gridworks.browsing.FilteredRows;
-import com.metaweb.gridworks.browsing.filters.ExpressionNumberComparisonRowFilter;
 import com.metaweb.gridworks.browsing.filters.ExpressionStringComparisonRowFilter;
 import com.metaweb.gridworks.browsing.filters.RowFilter;
 import com.metaweb.gridworks.expr.Evaluable;
-import com.metaweb.gridworks.expr.Parser;
 import com.metaweb.gridworks.expr.VariableExpr;
 import com.metaweb.gridworks.model.Project;
 

src/main/java/com/metaweb/gridworks/commands/ApproveNewReconcileCommand.java

@@ -39,7 +39,7 @@ public class ApproveNewReconcileCommand extends Command {
 				return;
 			}
 			
-			String columnName = column.headerLabel;
+			String columnName = column.getHeaderLabel();
 			List<CellChange> cellChanges = new ArrayList<CellChange>(project.rows.size());
 			
 			FilteredRows filteredRows = engine.getAllFilteredRows();
@@ -58,9 +58,10 @@ public class ApproveNewReconcileCommand extends Command {
 					if (cellIndex < row.cells.size()) {
 						Cell cell = row.cells.get(cellIndex);
 						
-						Cell newCell = new Cell();
+						Cell newCell = new Cell(
-						newCell.value = cell.value;
+							cell.value,
-						newCell.recon = cell.recon != null ? cell.recon.dup() : new Recon();
+							cell.recon != null ? cell.recon.dup() : new Recon()
+						);
 						newCell.recon.match = null;
 						newCell.recon.judgment = Judgment.New;
 						

src/main/java/com/metaweb/gridworks/commands/ApproveReconcileCommand.java

@@ -38,7 +38,7 @@ public class ApproveReconcileCommand extends Command {
 				return;
 			}
 			
-			String columnName = column.headerLabel;
+			String columnName = column.getHeaderLabel();
 			List<CellChange> cellChanges = new ArrayList<CellChange>(project.rows.size());
 			
 			FilteredRows filteredRows = engine.getAllFilteredRows();
@@ -57,9 +57,10 @@ public class ApproveReconcileCommand extends Command {
 					if (cellIndex < row.cells.size()) {
 						Cell cell = row.cells.get(cellIndex);
 						if (cell.recon != null && cell.recon.candidates.size() > 0) {
-							Cell newCell = new Cell();
+							Cell newCell = new Cell(
-							newCell.value = cell.value;
+								cell.value,
-							newCell.recon = cell.recon.dup();
+								cell.recon.dup()
+							);
 							newCell.recon.match = newCell.recon.candidates.get(0);
 							newCell.recon.judgment = Judgment.Approve;
 							

src/main/java/com/metaweb/gridworks/commands/CreateProjectFromUploadCommand.java

@@ -23,8 +23,8 @@ public class CreateProjectFromUploadCommand extends Command {
 		String content = readFileUpload(request, properties);
 		
 		ProjectMetadata pm = new ProjectMetadata();
-		pm.name = properties.getProperty("project-name");
+		pm.setName(properties.getProperty("project-name"));
-		pm.password = properties.getProperty("project-password");
+		pm.setPassword(properties.getProperty("project-password"));
 		
 		Project project = ProjectManager.singleton.createProject(pm);
 		
@@ -63,9 +63,7 @@ public class CreateProjectFromUploadCommand extends Command {
 						cell = cell.substring(1, cell.length() - 1);
 					}
 					
-					Column column = new Column();
+					Column column = new Column(c, cell);
-					column.cellIndex = c;
-					column.headerLabel = cell;
 					
 					project.columnModel.columns.add(column);
 				}
@@ -76,8 +74,7 @@ public class CreateProjectFromUploadCommand extends Command {
 				
 				if ((sep.charAt(0) == ',') ? parseCSVIntoRow(row, line) : parseTSVIntoRow(row, line)) {
 					project.rows.add(row);
-					project.columnModel.maxCellIndex = 
+					project.columnModel.setMaxCellIndex(Math.max(project.columnModel.getMaxCellIndex(), row.cells.size()));
-						Math.max(project.columnModel.maxCellIndex, row.cells.size());
 				}
 			}
 		}
@@ -94,8 +91,7 @@ public class CreateProjectFromUploadCommand extends Command {
 		for (int c = 0; c < cells.length; c++) {
 			String text = cells[c];
 			
-			Cell cell = new Cell();
+			Cell cell = new Cell(parseCellValue(text), null);
-			cell.value = parseCellValue(text);
 			
 			row.cells.add(cell);
 			
@@ -133,8 +129,7 @@ public class CreateProjectFromUploadCommand extends Command {
 				}
 			}
 			
-			Cell cell = new Cell();
+			Cell cell = new Cell(parseCellValue(text), null);
-			cell.value = parseCellValue(text);
 			
 			row.cells.add(cell);
 			

src/main/java/com/metaweb/gridworks/commands/DiscardReconcileCommand.java

@@ -37,7 +37,7 @@ public class DiscardReconcileCommand extends Command {
 				return;
 			}
 			
-			String columnName = column.headerLabel;
+			String columnName = column.getHeaderLabel();
 			List<CellChange> cellChanges = new ArrayList<CellChange>(project.rows.size());
 			
 			FilteredRows filteredRows = engine.getAllFilteredRows();
@@ -56,9 +56,7 @@ public class DiscardReconcileCommand extends Command {
 					if (cellIndex < row.cells.size()) {
 						Cell cell = row.cells.get(cellIndex);
 
-						Cell newCell = new Cell();
+						Cell newCell = new Cell(cell.value, null);
-						newCell.value = cell.value;
-						newCell.recon = null;
 						
 						CellChange cellChange = new CellChange(rowIndex, cellIndex, cell, newCell);
 						cellChanges.add(cellChange);

src/main/java/com/metaweb/gridworks/commands/DoTextTransformCommand.java

@@ -41,7 +41,7 @@ public class DoTextTransformCommand extends Command {
 				return;
 			}
 			
-			String columnName = column.headerLabel;
+			String columnName = column.getHeaderLabel();
 			String expression = request.getParameter("expression");
 			
 			Evaluable eval = new Parser(expression).getExpression();
@@ -73,9 +73,7 @@ public class DoTextTransformCommand extends Command {
 							bindings.put("cell", cell);
 							bindings.put("value", cell.value);
 							
-							Cell newCell = new Cell();
+							Cell newCell = new Cell(eval.evaluate(bindings), cell.recon);
-							newCell.value = eval.evaluate(bindings);
-							newCell.recon = cell.recon;
 							
 							CellChange cellChange = new CellChange(rowIndex, cellIndex, cell, newCell);
 							cellChanges.add(cellChange);

src/main/java/com/metaweb/gridworks/commands/ReconcileCommand.java

@@ -35,7 +35,7 @@ public class ReconcileCommand extends Command {
 				return;
 			}
 			
-			String columnName = column.headerLabel;
+			String columnName = column.getHeaderLabel();
 			String typeID = request.getParameter("type");
 			
 			List<ReconEntry> entries = new ArrayList<ReconEntry>(project.rows.size());

src/main/java/com/metaweb/gridworks/history/History.java

@@ -2,7 +2,6 @@ package com.metaweb.gridworks.history;
 
 import java.io.Serializable;
 import java.util.ArrayList;
-import java.util.Date;
 import java.util.List;
 import java.util.Properties;
 
@@ -39,7 +38,7 @@ public class History implements Serializable, Jsonizable {
 	}
 	
 	protected void setModified() {
-		ProjectManager.singleton.getProjectMetadata(_projectID).modified = new Date();
+		ProjectManager.singleton.getProjectMetadata(_projectID).updateModified();
 	}
 	
 	public List<HistoryEntry> getLastPastEntries(int count) {

src/main/java/com/metaweb/gridworks/history/HistoryProcess.java

@@ -13,7 +13,8 @@ public class HistoryProcess extends Process {
 	final protected Project _project;
 	final protected long 	_lastDoneID;
 	final protected String	_description;
-	boolean _done = false;
+	
+	protected boolean _done = false;
 
 	public HistoryProcess(Project project, long lastDoneID) {
 		_project = project;

src/main/java/com/metaweb/gridworks/model/Cell.java

@@ -12,8 +12,13 @@ import com.metaweb.gridworks.expr.HasFields;
 public class Cell implements Serializable, HasFields, Jsonizable {
 	private static final long serialVersionUID = -5891067829205458102L;
 	
-	public Object value;
+	final public Object value;
-	public Recon  recon;
+	final public Recon  recon;
+	
+	public Cell(Object value, Recon recon) {
+		this.value = value;
+		this.recon = recon;
+	}
 	
 	@Override
 	public Object getField(String name, Properties bindings) {

src/main/java/com/metaweb/gridworks/model/Column.java

@@ -13,20 +13,40 @@ import com.metaweb.gridworks.Jsonizable;
 public class Column implements Serializable, Jsonizable {
 	private static final long serialVersionUID = -1063342490951563563L;
 	
-	public int		cellIndex;
+	final private int		_cellIndex;
-	public String	headerLabel;
+	final private String	_originalHeaderLabel;
-	public Class 	valueType;
+	private String			_headerLabel;
 	
 	transient protected Map<String, Object> _precomputes;
 	
+	public Column(int cellIndex, String headerLabel) {
+		_cellIndex = cellIndex;
+		_originalHeaderLabel = _headerLabel = headerLabel;
+	}
+	
+	public int getCellIndex() {
+		return _cellIndex;
+	}
+
+	public String getOriginalHeaderLabel() {
+		return _originalHeaderLabel;
+	}
+	
+	public void setHeaderLabel(String headerLabel) {
+		this._headerLabel = headerLabel;
+	}
+
+	public String getHeaderLabel() {
+		return _headerLabel;
+	}
+
 	@Override
 	public void write(JSONWriter writer, Properties options)
 			throws JSONException {
 		
 		writer.object();
-		writer.key("cellIndex"); writer.value(cellIndex);
+		writer.key("cellIndex"); writer.value(getCellIndex());
-		writer.key("headerLabel"); writer.value(headerLabel);
+		writer.key("headerLabel"); writer.value(getHeaderLabel());
-		writer.key("valueType"); writer.value(valueType == null ? null : valueType.getSimpleName());
 		writer.endObject();
 	}
 	

src/main/java/com/metaweb/gridworks/model/ColumnGroup.java

@@ -15,13 +15,15 @@ import com.metaweb.gridworks.Jsonizable;
 public class ColumnGroup implements Serializable, Jsonizable {
 	private static final long serialVersionUID = 2161780779920066118L;
 
-	public int[] cellIndices;  // must be in order from smallest to largest
+	final public int[] 	cellIndices;  // must be in order from smallest to largest
-	public int	 keyCellIndex; // could be -1 if there is no key cell 
+	final public int	keyCellIndex; // could be -1 if there is no key cell 
 	
 	transient public ColumnGroup		parentGroup;
 	transient public List<ColumnGroup> 	subgroups;
 	
-	public ColumnGroup() {
+	public ColumnGroup(int[] cellIndices, int keyCellIndex) {
+		this.cellIndices = cellIndices;
+		this.keyCellIndex = keyCellIndex;
 		internalInitialize();
 	}
 	

src/main/java/com/metaweb/gridworks/model/ColumnModel.java

@@ -19,11 +19,11 @@ import com.metaweb.gridworks.Jsonizable;
 public class ColumnModel implements Serializable, Jsonizable {
 	private static final long serialVersionUID = 7679639795211544511L;
 	
-	public List<Column> 		columns = new LinkedList<Column>();
+	final public List<Column> 		columns = new LinkedList<Column>();
-	public int					maxCellIndex;
+	final public List<ColumnGroup> 	columnGroups = new LinkedList<ColumnGroup>();
 	
-	public List<ColumnGroup> 	columnGroups = new LinkedList<ColumnGroup>();
+	private int					_maxCellIndex;
-	public int					keyCellIndex;
+	private int					_keyCellIndex;
 	
 	transient protected Map<String, Column> 	_nameToColumn;
 	transient protected Map<Integer, Column> 	_cellIndexToColumn;
@@ -33,6 +33,23 @@ public class ColumnModel implements Serializable, Jsonizable {
 		internalInitialize();
 	}
 	
+	public void setMaxCellIndex(int maxCellIndex) {
+		this._maxCellIndex = Math.max(this._maxCellIndex, maxCellIndex);
+	}
+
+	public int getMaxCellIndex() {
+		return _maxCellIndex;
+	}
+
+	public void setKeyCellIndex(int keyCellIndex) {
+		// TODO: check validity of new cell index, e.g., it's not in any group
+		this._keyCellIndex = keyCellIndex;
+	}
+
+	public int getKeyCellIndex() {
+		return _keyCellIndex;
+	}
+
 	public void update() {
 		generateMaps();
 	}
@@ -58,7 +75,7 @@ public class ColumnModel implements Serializable, Jsonizable {
 		}
 		writer.endArray();
 		
-		writer.key("keyCellIndex"); writer.value(keyCellIndex);
+		writer.key("keyCellIndex"); writer.value(getKeyCellIndex());
 		writer.key("columnGroups");
 		writer.array();
 		for (ColumnGroup g : _rootColumnGroups) {
@@ -114,8 +131,8 @@ public class ColumnModel implements Serializable, Jsonizable {
 		_cellIndexToColumn = new HashMap<Integer, Column>();
 		
 		for (Column column : columns) {
-			_nameToColumn.put(column.headerLabel, column);
+			_nameToColumn.put(column.getHeaderLabel(), column);
-			_cellIndexToColumn.put(column.cellIndex, column);
+			_cellIndexToColumn.put(column.getCellIndex(), column);
 		}
 	}
 }

src/main/java/com/metaweb/gridworks/model/Project.java

@@ -12,11 +12,11 @@ import com.metaweb.gridworks.process.ProcessManager;
 public class Project implements Serializable {
 	private static final long serialVersionUID = -5089046824819472570L;
 	
-	public long id;
+	final public long 			id;
 	
-	public ColumnModel 		columnModel = new ColumnModel();
+	final public ColumnModel 	columnModel = new ColumnModel();
-	public List<Row> 		rows = new ArrayList<Row>();
+	final public List<Row> 		rows = new ArrayList<Row>();
-	public History 			history;
+	final public History 		history;
 	
 	transient public ProcessManager processManager;
 	

src/main/java/com/metaweb/gridworks/model/ReconCandidate.java

@@ -12,11 +12,19 @@ import com.metaweb.gridworks.expr.HasFields;
 public class ReconCandidate implements Serializable, HasFields, Jsonizable {
 	private static final long serialVersionUID = -8013997214978715606L;
 	
-	public String 	topicID;
+	final public String 	topicID;
-	public String 	topicGUID;
+	final public String 	topicGUID;
-	public String	topicName;
+	final public String		topicName;
-	public String[] typeIDs;
+	final public String[] 	typeIDs;
-	public double	score;
+	final public double		score;
+	
+	public ReconCandidate(String topicID, String topicGUID, String topicName, String[] typeIDs, double score) {
+		this.topicID = topicID;
+		this.topicGUID = topicGUID;
+		this.topicName = topicName;
+		this.typeIDs = typeIDs;
+		this.score = score;
+	}
 	
 	@Override
 	public Object getField(String name, Properties bindings) {

src/main/java/com/metaweb/gridworks/model/Row.java

@@ -16,7 +16,7 @@ public class Row implements Serializable, HasFields, Jsonizable {
 	
 	public boolean		flagged;
 	public boolean		starred;
-	public List<Cell> 	cells;
+	final public List<Cell> 	cells;
 	
 	transient public	List<Integer> contextRows;
 	transient public	List<Integer> contextCells;
@@ -45,7 +45,7 @@ public class Row implements Serializable, HasFields, Jsonizable {
 			Project project = (Project) bindings.get("project");
 			Column column = project.columnModel.getColumnByName(name);
 			if (column != null) {
-				return cells.get(column.cellIndex);
+				return cells.get(column.getCellIndex());
 			}
 			return null;
 		}

src/main/java/com/metaweb/gridworks/process/ReconProcess.java

@@ -165,9 +165,7 @@ public class ReconProcess extends LongRunningProcess implements Runnable {
 					for (ReconEntry entry : valueToEntries.get(value)) {
 						Cell oldCell = entry.cell;
 						
-						Cell newCell = new Cell();
+						Cell newCell = new Cell(oldCell.value, recon);
-						newCell.value = oldCell.value;
-						newCell.recon = recon;
 						
 						CellChange cellChange = new CellChange(
 							entry.rowIndex, 
@@ -198,19 +196,20 @@ public class ReconProcess extends LongRunningProcess implements Runnable {
 				continue;
 			}
 			
-			ReconCandidate candidate = new ReconCandidate();
-			
-			candidate.topicID = result.getString("id");
-			candidate.topicGUID = result.getString("guid");
-			candidate.topicName = result.getString("name");
-			candidate.score = result.getDouble("relevance:score");
-			
 			JSONArray types = result.getJSONArray("type");
-			candidate.typeIDs = new String[types.length()];
+			String[] typeIDs = new String[types.length()];
-			for (int j = 0; j < candidate.typeIDs.length; j++) {
+			for (int j = 0; j < typeIDs.length; j++) {
-				candidate.typeIDs[j] = types.getJSONObject(j).getString("id");
+				typeIDs[j] = types.getJSONObject(j).getString("id");
 			}
 			
+			ReconCandidate candidate = new ReconCandidate(
+				result.getString("id"),
+				result.getString("guid"),
+				result.getString("name"),
+				typeIDs,
+				result.getDouble("relevance:score")
+			);
+			
 			// best match
 			if (i == 0) {
 				recon.features.put("nameMatch", text.equalsIgnoreCase(candidate.topicName));