implemented the full gridworks -> freebase conduit via delegated oauth and freeq/tripleloader

(still doesn't work as argus returns a 500 but the entire conduit is in place)


git-svn-id: http://google-refine.googlecode.com/svn/trunk@519 7d457c2a-affb-35e4-300a-418c747d4874

.classpath

@@ -7,6 +7,7 @@
 	<classpathentry kind="lib" path="lib/servlet-api-2.5.jar" sourcepath="lib-src/servlet-api-2.5-sources.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-6.1.22.jar" sourcepath="lib-src/jetty-6.1.22-sources.jar"/>
 	<classpathentry kind="lib" path="lib/jetty-util-6.1.22.jar" sourcepath="lib-src/jetty-util-6.1.22-sources.jar"/>
+	<classpathentry kind="lib" path="lib/slf4j-api-1.5.6.jar" sourcepath="lib-src/slf4j-api-1.5.6-sources.jar"/>
 	<classpathentry kind="lib" path="lib/log4j-1.2.15.jar" sourcepath="lib-src/log4j-1.2.15-sources.jar"/>
 	<classpathentry kind="lib" path="lib/commons-codec-1.4.jar" sourcepath="lib-src/commons-codec-1.4-sources.jar"/>
 	<classpathentry kind="lib" path="lib/commons-lang-2.5.jar" sourcepath="lib-src/commons-lang-2.5-sources.jar"/>

LICENSE.txt

@@ -96,9 +96,6 @@ licenses/datejs.LICENSE.txt
 licenses/imgareaselect.LICENSE.txt
     imgareaselect
        
-licenses/blockui.LICENSE.txt
-    blockui
-       
 licenses/slf4j.LICENSE.txt
     slf4j-api
     slf4j-log4j12

build.xml

@@ -59,6 +59,7 @@
         <javac srcdir="${server.src.dir}" destdir="${server_classes.dir}" debug="true" includeAntRuntime="no">
             <classpath refid="class.path" />
         </javac>
+        <copy file="${conf.dir}/log4j.properties" tofile="${server_classes.dir}/log4j.properties"/>
     </target>
             
     <target name="build" depends="build_server">
@@ -68,6 +69,7 @@
             <src path="${src.dir}"/>
             <classpath refid="class.path" />
         </javac>
+        <copy file="${conf.dir}/log4j.properties" tofile="${webapp_classes.dir}/log4j.properties"/>
     </target>
 
     <target name="build_tests" depends="build">

gridworks

@@ -46,6 +46,9 @@ where [options] include:
   -m <memory> max memory heap size to use
      default: 1024M
                
+  -v <level> verbosity level [from low to high: error,warn,info,debug,trace]
+     default: info
+  
   --debug enable JVM debugging (on port 8000)
        
   --jmx enable JMX monitoring (for jconsole and jvisualvm)
@@ -566,7 +569,7 @@ run() {
     RUN_CMD="$JAVA -cp $CLASSPATH $OPTS com.metaweb.gridworks.Gridworks"
 
     #echo "$RUN_CMD"
-    #cd tooecho ""
+    #echo ""
   
     echo "Starting Gridworks at 'http://${GRIDWORKS_HOST}:${GRIDWORKS_PORT}/'"
     echo ""
@@ -697,6 +700,7 @@ while [ $# -ne 0 ] ; do
     -w) shift; GRIDWORKS_WEBAPP="$1"; shift; continue;;
     -d) shift; GRIDWORKS_DATA_DIR="$1"; shift; continue;;
     -m) shift; GRIDWORKS_MEMORY="$1"; shift; continue;;
+    -v) shift; GRIDWORKS_VERBOSITY="$1"; shift; continue;;
     --debug) shift; add_option '-Xdebug -Xrunjdwp:transport=dt_socket,address=8000,server=y,suspend=n'; continue;;
     --jmx) shift; add_option '-Dcom.sun.management.jmxremote'; continue;;
     -*) fail "Invalid option: $1";;
@@ -759,6 +763,11 @@ if [ -z "$GRIDWORKS_DIST_DIR" ]; then
     GRIDWORKS_DIST_DIR="dist"
 fi
 
+if [ -z "$GRIDWORKS_VERBOSITY" ]; then
+    GRIDWORKS_VERBOSITY="info"
+fi
+add_option "-Dgridworks.verbosity=$GRIDWORKS_VERBOSITY"
+
 if [ -z "$JYTHONPATH" ]; then
     JYTHONPATH="$GRIDWORKS_LIB_DIR/jython"
 else

licenses/blockui.LICENSE.txt

@@ -1,20 +0,0 @@
-Copyright (c) 2007-2008 M. Alsup
-
-Permission is hereby granted, free of charge, to any person obtaining
-a copy of this software and associated documentation files (the
-"Software"), to deal in the Software without restriction, including
-without limitation the rights to use, copy, modify, merge, publish,
-distribute, sublicense, and/or sell copies of the Software, and to
-permit persons to whom the Software is furnished to do so, subject to
-the following conditions:
-
-The above copyright notice and this permission notice shall be
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
-MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
-LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
-OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION
-WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

src/conf/log4j.properties

@@ -0,0 +1,9 @@
+log4j.rootLogger=INFO, console
+log4j.logger.org.mortbay.log=WARN
+log4j.logger.org.mortbay.jetty=ERROR
+log4j.logger.org.apache.http.headers=WARN
+log4j.logger.org.apache.http.impl=WARN
+log4j.logger.org.apache.http.client=WARN
+
+log4j.appender.console=org.apache.log4j.ConsoleAppender
+log4j.appender.console.layout=com.metaweb.util.logging.IndentingLayout

src/main/java/com/metaweb/gridworks/GridworksServlet.java

@@ -11,10 +11,13 @@ import javax.servlet.http.HttpServlet;
 import javax.servlet.http.HttpServletRequest;
 import javax.servlet.http.HttpServletResponse;
 
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
 import com.metaweb.gridworks.commands.Command;
+import com.metaweb.gridworks.commands.auth.AuthorizeCommand;
 import com.metaweb.gridworks.commands.auth.CheckAuthorizationCommand;
 import com.metaweb.gridworks.commands.auth.DeAuthorizeCommand;
-import com.metaweb.gridworks.commands.auth.AuthorizeCommand;
 import com.metaweb.gridworks.commands.edit.AddColumnCommand;
 import com.metaweb.gridworks.commands.edit.AnnotateOneRowCommand;
 import com.metaweb.gridworks.commands.edit.AnnotateRowsCommand;
@@ -35,6 +38,7 @@ import com.metaweb.gridworks.commands.edit.SplitColumnCommand;
 import com.metaweb.gridworks.commands.edit.SplitMultiValueCellsCommand;
 import com.metaweb.gridworks.commands.edit.TextTransformCommand;
 import com.metaweb.gridworks.commands.edit.UndoRedoCommand;
+import com.metaweb.gridworks.commands.edit.UploadDataCommand;
 import com.metaweb.gridworks.commands.info.ComputeClustersCommand;
 import com.metaweb.gridworks.commands.info.ComputeFacetsCommand;
 import com.metaweb.gridworks.commands.info.ExportRowsCommand;
@@ -72,6 +76,8 @@ public class GridworksServlet extends HttpServlet {
     // timer for periodically saving projects
     static protected Timer _timer;
 
+    final Logger logger = LoggerFactory.getLogger("servlet");
+    
     static {
         _commands.put("create-project-from-upload", new CreateProjectCommand());
         _commands.put("import-project", new ImportProjectCommand());
@@ -137,11 +143,14 @@ public class GridworksServlet extends HttpServlet {
         _commands.put("check-authorization", new CheckAuthorizationCommand());
         _commands.put("authorize", new AuthorizeCommand());
         _commands.put("deauthorize", new DeAuthorizeCommand());
+
+        _commands.put("upload-data", new UploadDataCommand());
     }
 
     @Override
     public void init() throws ServletException {
         super.init();
+        logger.trace("> initialize");
         
         ProjectManager.initialize();
                 
@@ -156,10 +165,14 @@ public class GridworksServlet extends HttpServlet {
                 ProjectManager.singleton.save(false); // quick, potentially incomplete save
             }
         }, period, period);
+        
+        logger.trace("< initialize");
     }
     
     @Override
     public void destroy() {
+        logger.trace("> destroy");
+
         // cancel automatic periodic saving and force a complete save. 
         if (_timer != null) {
             _timer.cancel();
@@ -171,34 +184,41 @@ public class GridworksServlet extends HttpServlet {
         }
         
         super.destroy();
+
+        logger.trace("< destroy");
     }
     
-    protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
+    protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-        Command command = _commands.get(getCommandName(request));
+        String commandName = getCommandName(request);
+        Command command = _commands.get(commandName);
         if (command != null) {
-            command.doPost(request, response);
+            logger.trace("> GET {}", commandName);
+            command.doGet(request, response);
+            logger.trace("< GET {}", commandName);
         } else {
             response.sendError(404);
         }
     }
     
-    protected void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
+    protected void doPost(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-        Command command = _commands.get(getCommandName(request));
+        String commandName = getCommandName(request);
+        Command command = _commands.get(commandName);
         if (command != null) {
-            command.doGet(request, response);
+            logger.trace("> POST {}", commandName);
+            command.doPost(request, response);
+            logger.trace("< POST {}", commandName);
         } else {
             response.sendError(404);
         }
     }
         
     protected String getCommandName(HttpServletRequest request) {
-        /*
+        // Remove extraneous path segments that might be there for other purposes,
-         *  Remove extraneous path segments that might be there for other purposes,
+        // e.g., for /export-rows/filename.ext, export-rows is the command while
-         *  e.g., for /export-rows/filename.ext, export-rows is the command while
+        // filename.ext is only for the browser to prompt a convenient filename. 
-         *  filename.ext is only for the browser to prompt a convenient filename. 
-         */
         String commandName = request.getPathInfo().substring(1);
         int slash = commandName.indexOf('/');
         return slash > 0 ? commandName.substring(0, slash) : commandName;
     }
 }
+

src/main/java/com/metaweb/gridworks/ProjectManager.java

@@ -19,6 +19,8 @@ import org.json.JSONException;
 import org.json.JSONObject;
 import org.json.JSONTokener;
 import org.json.JSONWriter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 import com.codeberry.jdatapath.DataPath;
 import com.codeberry.jdatapath.JDataPathSystem;
@@ -34,6 +36,8 @@ public class ProjectManager {
     protected Map<Long, ProjectMetadata> _projectsMetadata;
     protected List<String> 				 _expressions;
     
+    final static Logger logger = LoggerFactory.getLogger("project_manager");
+    
     /**
      *  While each project's metadata is loaded completely at start-up, each project's raw data 
      *  is loaded only when the project is accessed by the user. This is because project
@@ -52,7 +56,7 @@ public class ProjectManager {
     static public synchronized void initialize() {
         if (singleton == null) {
             File dir = getProjectLocation();
-            Gridworks.log("Using workspace directory: " + dir.getAbsolutePath());
+            logger.info("Using workspace directory: {}", dir.getAbsolutePath());
             
             singleton = new ProjectManager(dir);
         }
@@ -83,9 +87,7 @@ public class ProjectManager {
         	     *  environment variables and try our best to find a user-specific path.
         	     */
         	    
-        		Gridworks.log(
+        		logger.warn("Failed to use jdatapath to detect user data path: resorting to environment variables");
-        		    "Failed to use jdatapath to detect user data path. " +
-        		    "Resorting to environment variables.");
         		
                 File parentDir = null;
                 {
@@ -289,7 +291,7 @@ public class ProjectManager {
             } catch (Exception e) {
                 e.printStackTrace();
                 
-                Gridworks.log("Failed to save workspace.");
+                logger.warn("Failed to save workspace");
                 return;
             }
         	
@@ -305,7 +307,7 @@ public class ProjectManager {
                 oldFile.delete();
             }
             
-            //Gridworks.log("Saved workspace.");
+            logger.info("Saved workspace");
         }
     }
     
@@ -397,7 +399,7 @@ public class ProjectManager {
                 }
             });
             
-            Gridworks.log(allModified ?
+            logger.info(allModified ?
                 "Saving all modified projects ..." :
                 "Saving some modified projects ..."
             );
@@ -456,7 +458,7 @@ public class ProjectManager {
     }
     
     protected boolean loadFromFile(File file) {
-        Gridworks.log("Loading workspace from " + file.getAbsolutePath());
+        logger.info("Loading workspace: {}", file.getAbsolutePath());
         
         _projectsMetadata.clear();
         _expressions.clear();
@@ -482,14 +484,14 @@ public class ProjectManager {
                 JSONUtilities.getStringList(obj, "expressions", _expressions);
                 return true;
             } catch (JSONException e) {
-                Gridworks.warn("Error reading " + file, e);
+                logger.warn("Error reading file", e);
             } catch (IOException e) {
-                Gridworks.warn("Error reading " + file, e);
+                logger.warn("Error reading file", e);
             } finally {
                 try {
                     reader.close();
                 } catch (IOException e) {
-                    Gridworks.warn("Exception closing file",e);
+                    logger.warn("Exception closing file",e);
                 }
             }
         }

src/main/java/com/metaweb/gridworks/ProjectMetadata.java

@@ -14,6 +14,8 @@ import org.json.JSONException;
 import org.json.JSONObject;
 import org.json.JSONTokener;
 import org.json.JSONWriter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 import com.metaweb.gridworks.util.JSONUtilities;
 import com.metaweb.gridworks.util.ParsingUtilities;
@@ -30,6 +32,8 @@ public class ProjectMetadata implements Jsonizable {
     private int            _encodingConfidence;
     private List<String>   _expressions = new LinkedList<String>();
     
+    final Logger logger = LoggerFactory.getLogger("project_metadata");
+    
     protected ProjectMetadata(Date date) {
         _created = date;
     }
@@ -64,7 +68,7 @@ public class ProjectMetadata implements Jsonizable {
         } catch (Exception e) {
             e.printStackTrace();
             
-            Gridworks.log("Failed to save project metadata");
+            logger.warn("Failed to save project metadata");
             return;
         }
         

src/main/java/com/metaweb/gridworks/browsing/facets/ScatterplotFacet.java

@@ -14,8 +14,9 @@ import org.apache.commons.codec.binary.Base64;
 import org.json.JSONException;
 import org.json.JSONObject;
 import org.json.JSONWriter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.browsing.FilteredRows;
 import com.metaweb.gridworks.browsing.filters.DualExpressionsNumberComparisonRowFilter;
 import com.metaweb.gridworks.browsing.filters.RowFilter;
@@ -109,6 +110,8 @@ public class ScatterplotFacet implements Facet {
     
     public static String EMPTY_IMAGE;
     
+    final static Logger logger = LoggerFactory.getLogger("scatterplot_facet");
+    
     static {
         try {
             EMPTY_IMAGE = serializeImage(new BufferedImage(1, 1, BufferedImage.TYPE_4BYTE_ABGR));
@@ -302,7 +305,7 @@ public class ScatterplotFacet implements Facet {
                     try {
                         image = serializeImage(drawer.getImage());
                     } catch (IOException e) {
-                        Gridworks.warn("Exception caught while generating the image", e);
+                        logger.warn("Exception caught while generating the image", e);
                     }
                 } else {
                     image = EMPTY_IMAGE;
@@ -341,7 +344,7 @@ public class ScatterplotFacet implements Facet {
             try {
                 eval = MetaParser.parse(expression);
             } catch (ParsingException e) {
-                Gridworks.warn("Error parsing expression",e);
+                logger.warn("Error parsing expression",e);
             }
         }
         NumericBinIndex index = (NumericBinIndex) column.getPrecompute(key);

src/main/java/com/metaweb/gridworks/clustering/binning/BinningClusterer.java

@@ -14,8 +14,9 @@ import java.util.Map.Entry;
 import org.json.JSONException;
 import org.json.JSONObject;
 import org.json.JSONWriter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.browsing.Engine;
 import com.metaweb.gridworks.browsing.FilteredRows;
 import com.metaweb.gridworks.browsing.RowVisitor;
@@ -30,6 +31,8 @@ public class BinningClusterer extends Clusterer {
     
     static final protected Map<String, Keyer> _keyers = new HashMap<String, Keyer>();
 
+    final static Logger logger = LoggerFactory.getLogger("binning_clusterer");
+    
     List<Map<String,Integer>> _clusters;
      
     static {
@@ -54,7 +57,7 @@ public class BinningClusterer extends Clusterer {
             if (k instanceof NGramFingerprintKeyer) {
                 try {
                     int size = _config.getJSONObject("params").getInt("ngram-size");
-                    Gridworks.log("Using ngram size: " + size);
+                    logger.debug("Using ngram size: {}", size);
                     _params = new Object[1];
                     _params[0] = size;
                 } catch (JSONException e) {

src/main/java/com/metaweb/gridworks/clustering/knn/kNNClusterer.java

@@ -15,8 +15,9 @@ import java.util.Map.Entry;
 import org.json.JSONException;
 import org.json.JSONObject;
 import org.json.JSONWriter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.browsing.Engine;
 import com.metaweb.gridworks.browsing.FilteredRows;
 import com.metaweb.gridworks.browsing.RowVisitor;
@@ -47,6 +48,8 @@ public class kNNClusterer extends Clusterer {
 
     Map<Serializable, Integer> _counts = new HashMap<Serializable, Integer>();
 
+    final static Logger logger = LoggerFactory.getLogger("kNN_clusterer");
+    
     static {
         _distances.put("levenshtein", new LevenshteinDistance());
         _distances.put("jaccard", new JaccardDistance());
@@ -109,11 +112,11 @@ public class kNNClusterer extends Clusterer {
             try {
                 JSONObject params = o.getJSONObject("params");
                 _radius = params.getDouble("radius");
-                Gridworks.warn("Use radius: " + _radius);
+                logger.debug("Use radius: {}", _radius);
                 _blockingNgramSize = params.getInt("blocking-ngram-size");
-                Gridworks.warn("Use blocking ngram size: " + _blockingNgramSize);
+                logger.debug("Use blocking ngram size: {}",_blockingNgramSize);
             } catch (JSONException e) {
-                Gridworks.warn("No parameters found, using defaults");
+                logger.debug("No parameters found, using defaults");
             }
             _clusterer = new NGramClusterer(_distance, _blockingNgramSize);
         }

src/main/java/com/metaweb/gridworks/commands/Command.java

@@ -14,6 +14,8 @@ import org.apache.commons.lang.NotImplementedException;
 import org.json.JSONException;
 import org.json.JSONObject;
 import org.json.JSONWriter;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 import com.metaweb.gridworks.Jsonizable;
 import com.metaweb.gridworks.ProjectManager;
@@ -28,6 +30,9 @@ import com.metaweb.gridworks.util.ParsingUtilities;
  * are AJAX calls.
  */
 public abstract class Command {
+    
+    final static protected Logger logger = LoggerFactory.getLogger("command");
+    
     public void doPost(HttpServletRequest request, HttpServletResponse response) 
         throws ServletException, IOException {
         
@@ -50,10 +55,7 @@ public abstract class Command {
      */
     static protected JSONObject getEngineConfig(HttpServletRequest request) throws Exception {
         String json = request.getParameter("engine");
-        if (json != null) {
+        return (json == null) ? null : ParsingUtilities.evaluateJsonStringToObject(json);
-            return ParsingUtilities.evaluateJsonStringToObject(json);
-        }
-        return null;
     }
     
     /**
@@ -108,10 +110,9 @@ public abstract class Command {
         String value = request.getParameter(name);
         if (value != null) {
             try {
-                JSONObject o = ParsingUtilities.evaluateJsonStringToObject(value);
+                return ParsingUtilities.evaluateJsonStringToObject(value);
-                
-                return o;
             } catch (JSONException e) {
+                logger.warn("error getting json parameter",e);
             }
         }
         return null;
@@ -123,15 +124,22 @@ public abstract class Command {
 		Project project,
 		Process process
 	) throws Exception {
+        response.setCharacterEncoding("UTF-8");
+        response.setHeader("Content-Type", "application/json");
+        
         HistoryEntry historyEntry = project.processManager.queueProcess(process);
         if (historyEntry != null) {
-            JSONWriter writer = new JSONWriter(response.getWriter());
+            Writer w = response.getWriter();
+            JSONWriter writer = new JSONWriter(w);
             Properties options = new Properties();
             
             writer.object();
             writer.key("code"); writer.value("ok");
             writer.key("historyEntry"); historyEntry.write(writer, options);
             writer.endObject();
+            
+            w.flush();
+            w.close();
         } else {
         	respond(response, "{ \"code\" : \"pending\" }");
         }
@@ -140,8 +148,25 @@ public abstract class Command {
     static protected void respond(HttpServletResponse response, String content) 
         throws IOException {
         
+        response.setCharacterEncoding("UTF-8");
         response.setStatus(HttpServletResponse.SC_OK);
-        response.getWriter().write(content);
+        Writer w = response.getWriter();
+        w.write(content);
+        w.flush();
+        w.close();
+    }
+    
+    static protected void respond(HttpServletResponse response, String status, String message) 
+        throws IOException, JSONException {
+        
+        Writer w = response.getWriter();
+        JSONWriter writer = new JSONWriter(w);
+        writer.object();
+        writer.key("status"); writer.value(status);
+        writer.key("message"); writer.value(message);
+        writer.endObject();
+        w.flush();
+        w.close();
     }
     
     static protected void respondJSON(HttpServletResponse response, Jsonizable o) 
@@ -157,15 +182,19 @@ public abstract class Command {
         response.setCharacterEncoding("UTF-8");
         response.setHeader("Content-Type", "application/json");
         
-        JSONWriter writer = new JSONWriter(response.getWriter());
+        Writer w = response.getWriter();
+        JSONWriter writer = new JSONWriter(w);
         
         o.write(writer, options);
+        w.flush();
+        w.close();
     }
     
     static protected void respondException(HttpServletResponse response, Exception e) 
         throws IOException {
         
-        e.printStackTrace();
+        logger.warn("Exception caught", e);
+
         try {
             JSONObject o = new JSONObject();
             o.put("code", "error");
@@ -179,6 +208,7 @@ public abstract class Command {
             
             o.put("stack", sw.toString());
             
+            response.setCharacterEncoding("UTF-8");
             response.setHeader("Content-Type", "application/json");
             respond(response, o.toString());
         } catch (JSONException e1) {
@@ -187,12 +217,7 @@ public abstract class Command {
     }
     
     static protected void redirect(HttpServletResponse response, String url) throws IOException {
-        response.setStatus(HttpServletResponse.SC_OK);
+        response.sendRedirect(url);
-        
-        Writer writer = response.getWriter();
-        writer.write("<html><head>");
-        writer.write("<meta http-equiv=\"refresh\" content=\"1;url=" + url + "\">");
-        writer.write("</head><body></body></html>");
     }
     
 }

src/main/java/com/metaweb/gridworks/commands/auth/AuthorizationCommand.java

@@ -1,33 +0,0 @@
-package com.metaweb.gridworks.commands.auth;
-
-import java.io.IOException;
-
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import org.json.JSONException;
-import org.json.JSONWriter;
-
-import com.metaweb.gridworks.commands.Command;
-import com.metaweb.gridworks.oauth.OAuthUtilities;
-import com.metaweb.gridworks.oauth.Provider;
-
-public class AuthorizationCommand extends Command {
-
-    private static final String PROVIDER_PARAM = "provider";
-
-    protected void respond(HttpServletResponse response, String status, String message) throws IOException, JSONException {
-        JSONWriter writer = new JSONWriter(response.getWriter());
-        writer.object();
-        writer.key("status"); writer.value(status);
-        writer.key("message"); writer.value(message);
-        writer.endObject();
-    }
-    
-    protected Provider getProvider(HttpServletRequest request) {
-        String provider_str = request.getParameter(PROVIDER_PARAM);
-        Provider provider = OAuthUtilities.getProvider(request.getParameter(PROVIDER_PARAM));
-        if (provider == null) throw new RuntimeException("Can't find OAuth provider '" + provider_str + "'");
-        return provider;
-    }
-}

src/main/java/com/metaweb/gridworks/commands/auth/AuthorizeCommand.java

@@ -11,26 +11,28 @@ import oauth.signpost.OAuthConsumer;
 import oauth.signpost.OAuthProvider;
 
 import com.metaweb.gridworks.Gridworks;
+import com.metaweb.gridworks.commands.Command;
 import com.metaweb.gridworks.oauth.Credentials;
 import com.metaweb.gridworks.oauth.OAuthUtilities;
 import com.metaweb.gridworks.oauth.Provider;
 
-public class AuthorizeCommand  extends AuthorizationCommand {
+public class AuthorizeCommand  extends Command {
     
     private static final String OAUTH_VERIFIER_PARAM = "oauth_verifier";
     
     public void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
-        try {
 
         // get the provider from the request
-            Provider provider = getProvider(request);
+        Provider provider = OAuthUtilities.getProvider(request);
+
+        try {
             
             // see if the request comes with access credentials
             Credentials access_credentials = Credentials.getCredentials(request, provider, Credentials.Type.ACCESS);
                                     
             // prepare the continuation URL that the OAuth provider will redirect the user to
             // (we need to make sure this URL points back to this code or the dance will never complete)
-            String callbackURL = Gridworks.getURL() + "/command/authorize";
+            String callbackURL = Gridworks.getURL() + "/command/authorize/" + provider.getHost();
             
             if (access_credentials == null) {
                 // access credentials are not available so we need to check 
@@ -39,7 +41,7 @@ public class AuthorizeCommand  extends AuthorizationCommand {
                 // get the request token credentials
                 Credentials request_credentials = Credentials.getCredentials(request, provider, Credentials.Type.REQUEST);
 
-                OAuthConsumer consumer = OAuthUtilities.getConsumer(provider);
+                OAuthConsumer consumer = OAuthUtilities.getConsumer(request_credentials, provider);
                 OAuthProvider pp = OAuthUtilities.getOAuthProvider(provider);
                 
                 if (request_credentials == null) {
@@ -95,6 +97,8 @@ public class AuthorizeCommand  extends AuthorizationCommand {
                 finish(response);
             }
         } catch (Exception e) {
+            Credentials.deleteCredentials(request, response, provider, Credentials.Type.REQUEST);
+            Credentials.deleteCredentials(request, response, provider, Credentials.Type.ACCESS);
             respondException(response, e);
         }
     }

src/main/java/com/metaweb/gridworks/commands/auth/CheckAuthorizationCommand.java

@@ -1,34 +1,28 @@
 package com.metaweb.gridworks.commands.auth;
 
 import java.io.IOException;
-import java.io.InputStream;
-import java.io.OutputStream;
 
 import javax.servlet.ServletException;
 import javax.servlet.http.HttpServletRequest;
 import javax.servlet.http.HttpServletResponse;
 
-import oauth.signpost.OAuthConsumer;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import org.apache.http.HttpResponse;
+import com.metaweb.gridworks.commands.Command;
-import org.apache.http.client.HttpClient;
-import org.apache.http.client.methods.HttpGet;
-import org.apache.http.impl.client.DefaultHttpClient;
-import org.apache.http.params.CoreProtocolPNames;
-
-import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.oauth.Credentials;
 import com.metaweb.gridworks.oauth.OAuthUtilities;
 import com.metaweb.gridworks.oauth.Provider;
-import com.metaweb.gridworks.util.IOUtils;
+import com.metaweb.gridworks.util.FreebaseUtils;
 
-public class CheckAuthorizationCommand extends AuthorizationCommand {
+public class CheckAuthorizationCommand extends Command {
+    
+    final static Logger logger = LoggerFactory.getLogger("check-authorization_command");
     
     public void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
         
         try {
-
+            Provider provider = OAuthUtilities.getProvider(request);
-            Provider provider = getProvider(request);
                         
             // this cookie should not be there, but this is good hygiene practice
             Credentials.deleteCredentials(request, response, provider, Credentials.Type.REQUEST);
@@ -39,30 +33,15 @@ public class CheckAuthorizationCommand extends AuthorizationCommand {
             response.setHeader("Content-Type", "application/json");
             
             if (access_credentials != null) {
-                Gridworks.log(access_credentials.toString());
+                String user_info = FreebaseUtils.getUserInfo(access_credentials, provider);
-                
+                response.getWriter().write(user_info);
-                OAuthConsumer consumer = OAuthUtilities.getConsumer(access_credentials, provider);
+            } else {    
-    
-                HttpGet httpRequest = new HttpGet("http://" + provider.getHost() + "/api/service/user_info");
-                httpRequest.getParams().setParameter(CoreProtocolPNames.USER_AGENT, "Gridworks " + Gridworks.getVersion());
-                
-                // this is required by the Metaweb API to avoid XSS
-                httpRequest.setHeader("X-Requested-With", "1");
-                
-                consumer.sign(request);
-
-                HttpClient httpClient = new DefaultHttpClient();
-                HttpResponse httpResponse = httpClient.execute(httpRequest);
-                OutputStream output = response.getOutputStream();
-                InputStream input = httpResponse.getEntity().getContent();
-                IOUtils.copy(input, output);
-                input.close();
-                output.close();
-            }
-
                 respond(response, "401 Unauthorized", "You don't have the right credentials");
+            }
         } catch (Exception e) {
+            logger.info("error",e);
             respondException(response, e);
         }
     }
+    
 }

src/main/java/com/metaweb/gridworks/commands/auth/DeAuthorizeCommand.java

@@ -6,10 +6,12 @@ import javax.servlet.ServletException;
 import javax.servlet.http.HttpServletRequest;
 import javax.servlet.http.HttpServletResponse;
 
+import com.metaweb.gridworks.commands.Command;
 import com.metaweb.gridworks.oauth.Credentials;
+import com.metaweb.gridworks.oauth.OAuthUtilities;
 import com.metaweb.gridworks.oauth.Provider;
 
-public class DeAuthorizeCommand extends AuthorizationCommand {
+public class DeAuthorizeCommand extends Command {
     
     public void doGet(HttpServletRequest request, HttpServletResponse response) throws ServletException, IOException {
         
@@ -17,7 +19,7 @@ public class DeAuthorizeCommand extends AuthorizationCommand {
             response.setCharacterEncoding("UTF-8");
             response.setHeader("Content-Type", "application/json");
             
-            Provider provider = getProvider(request);
+            Provider provider = OAuthUtilities.getProvider(request);
             
             Credentials.deleteCredentials(request, response, provider, Credentials.Type.ACCESS);
             

src/main/java/com/metaweb/gridworks/commands/edit/CreateProjectCommand.java

@@ -36,6 +36,8 @@ import org.apache.commons.fileupload.util.Streams;
 import org.apache.tools.bzip2.CBZip2InputStream;
 import org.apache.tools.tar.TarEntry;
 import org.apache.tools.tar.TarInputStream;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
 import com.ibm.icu.text.CharsetDetector;
 import com.ibm.icu.text.CharsetMatch;
@@ -54,6 +56,8 @@ import com.metaweb.gridworks.util.ParsingUtilities;
 
 public class CreateProjectCommand extends Command {
 
+    final static Logger logger = LoggerFactory.getLogger("create-project_command");
+    
     @Override
     public void doPost(HttpServletRequest request, HttpServletResponse response)
             throws ServletException, IOException {
@@ -164,7 +168,7 @@ public class CreateProjectCommand extends Command {
         InputStream inputStream
     ) throws Exception {
 
-        Gridworks.info("Importing " + fileName + "");
+        logger.info("Importing '{}'", fileName);
         
         if (fileName.endsWith(".zip") || fileName.endsWith(".tar.gz") || fileName.endsWith(".tgz") || fileName.endsWith(".tar.bz2")) {
 
@@ -236,7 +240,8 @@ public class CreateProjectCommand extends Command {
                     }
                 }
             }
-            Gridworks.log("Most frequent extensions: " + exts.toString());
+            
+            logger.info("Most frequent extensions: {}", exts.toString());
 
             // second pass, load the data for real
             is = getStream(fileName, new FileInputStream(file));
@@ -399,10 +404,7 @@ public class CreateProjectCommand extends Command {
                     options.setProperty("encoding", charsetMatch.getName());
                     options.setProperty("encoding_confidence", Integer.toString(charsetMatch.getConfidence()));
                     
-                    Gridworks.log(
+                    logger.info("Best encoding guess: {} [confidence: {}]", charsetMatch.getName(), charsetMatch.getConfidence());
-                        "Best encoding guess: " + 
-                        charsetMatch.getName() + 
-                        " [confidence: " + charsetMatch.getConfidence() + "]");
                     
                     break;
                 } catch (UnsupportedEncodingException e) {

src/main/java/com/metaweb/gridworks/commands/edit/ImportProjectCommand.java

@@ -19,8 +19,9 @@ import org.apache.commons.fileupload.servlet.ServletFileUpload;
 import org.apache.commons.fileupload.util.Streams;
 import org.apache.tools.tar.TarEntry;
 import org.apache.tools.tar.TarInputStream;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.ProjectManager;
 import com.metaweb.gridworks.ProjectMetadata;
 import com.metaweb.gridworks.commands.Command;
@@ -29,6 +30,8 @@ import com.metaweb.gridworks.util.ParsingUtilities;
 
 public class ImportProjectCommand extends Command {
 
+    final static Logger logger = LoggerFactory.getLogger("import-project_command");
+    
     @Override
     public void doPost(HttpServletRequest request, HttpServletResponse response)
             throws ServletException, IOException {
@@ -37,7 +40,7 @@ public class ImportProjectCommand extends Command {
             Properties options = ParsingUtilities.parseUrlParameters(request);
             
             long projectID = Project.generateID();
-            Gridworks.log("Importing existing project using new ID " + projectID);
+            logger.info("Importing existing project using new ID {}", projectID);
             
             internalImport(request, options, projectID);
 

src/main/java/com/metaweb/gridworks/commands/edit/UploadDataCommand.java

@@ -0,0 +1,51 @@
+package com.metaweb.gridworks.commands.edit;
+
+import java.io.IOException;
+import java.io.StringWriter;
+import java.util.Properties;
+
+import javax.servlet.ServletException;
+import javax.servlet.http.HttpServletRequest;
+import javax.servlet.http.HttpServletResponse;
+
+import org.json.JSONException;
+import org.json.JSONObject;
+
+import com.metaweb.gridworks.browsing.Engine;
+import com.metaweb.gridworks.commands.Command;
+import com.metaweb.gridworks.exporters.TripleloaderExporter;
+import com.metaweb.gridworks.model.Project;
+import com.metaweb.gridworks.util.FreebaseUtils;
+
+public class UploadDataCommand extends Command {
+
+    @Override
+    public void doPost(HttpServletRequest request, HttpServletResponse response)
+            throws ServletException, IOException {
+        
+        try {
+            Project project = getProject(request);
+            Engine engine = getEngine(request, project);
+            TripleloaderExporter exporter = new TripleloaderExporter();
+            StringWriter triples = new StringWriter(1024 * 10);
+            exporter.export(project, new Properties(), engine, triples);
+
+            String info = request.getParameter("info");
+                        
+            String result = FreebaseUtils.uploadTriples(request, info, triples.toString());
+
+            response.setCharacterEncoding("UTF-8");
+            response.setHeader("Content-Type", "application/json");
+            
+            try {
+                new JSONObject(result);
+                response.getWriter().write(result);
+            } catch (JSONException e) {
+                respond(response,"500 Error", result);
+            }
+            
+        } catch (Exception e) {
+            respondException(response, e);
+        }
+    }
+}

src/main/java/com/metaweb/gridworks/commands/info/ComputeClustersCommand.java

@@ -7,8 +7,9 @@ import javax.servlet.http.HttpServletRequest;
 import javax.servlet.http.HttpServletResponse;
 
 import org.json.JSONObject;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.browsing.Engine;
 import com.metaweb.gridworks.clustering.Clusterer;
 import com.metaweb.gridworks.clustering.binning.BinningClusterer;
@@ -18,6 +19,8 @@ import com.metaweb.gridworks.model.Project;
 
 public class ComputeClustersCommand extends Command {
 
+    final static Logger logger = LoggerFactory.getLogger("compute-clusters_command");
+
     @Override
     public void doPost(HttpServletRequest request, HttpServletResponse response)
             throws ServletException, IOException {
@@ -42,7 +45,7 @@ public class ComputeClustersCommand extends Command {
             clusterer.computeClusters(engine);
             
             respondJSON(response, clusterer);
-            Gridworks.log("computed clusters [" + type + "," + clusterer_conf.getString("function") + "] in " + (System.currentTimeMillis() - start) + "ms");
+            logger.info("computed clusters [{},{}] in {}ms", new Object[] { type, clusterer_conf.getString("function"), Long.toString(System.currentTimeMillis() - start) });
         } catch (Exception e) {
             respondException(response, e);
         }

src/main/java/com/metaweb/gridworks/commands/info/GetScatterplotCommand.java

@@ -13,8 +13,9 @@ import javax.servlet.http.HttpServletResponse;
 
 import org.json.JSONException;
 import org.json.JSONObject;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.browsing.Engine;
 import com.metaweb.gridworks.browsing.FilteredRows;
 import com.metaweb.gridworks.browsing.facets.NumericBinIndex;
@@ -29,6 +30,8 @@ import com.metaweb.gridworks.model.Project;
 
 public class GetScatterplotCommand extends Command {
 
+    final static Logger logger = LoggerFactory.getLogger("get-scatterplot_command");
+    
     public void doGet(HttpServletRequest request, HttpServletResponse response)
             throws ServletException, IOException {
         
@@ -50,7 +53,7 @@ public class GetScatterplotCommand extends Command {
                 sos.close();
             }
             
-            Gridworks.log("Drawn scatterplot in " + (System.currentTimeMillis() - start) + "ms");
+            logger.info("Drawn scatterplot in {} ms", Long.toString(System.currentTimeMillis() - start));
         } catch (Exception e) {
             e.printStackTrace();
             respondException(response, e);
@@ -97,7 +100,7 @@ public class GetScatterplotCommand extends Command {
         try {
             eval_x = MetaParser.parse(expression_x);
         } catch (ParsingException e) {
-            Gridworks.warn("error parsing expression", e);
+            logger.warn("error parsing expression", e);
         }
         
         String columnName_y = o.getString(ScatterplotFacet.Y_COLUMN_NAME);
@@ -115,7 +118,7 @@ public class GetScatterplotCommand extends Command {
         try {
             eval_y = MetaParser.parse(expression_y);
         } catch (ParsingException e) {
-            Gridworks.warn("error parsing expression", e);
+            logger.warn("error parsing expression", e);
         }
         
         NumericBinIndex index_x = null;

src/main/java/com/metaweb/gridworks/expr/functions/ToDate.java

@@ -1,13 +1,12 @@
 package com.metaweb.gridworks.expr.functions;
 
-import java.util.Properties;
-
-import org.json.JSONException;
-import org.json.JSONWriter;
-
 import java.text.SimpleDateFormat;
 import java.util.Date;
 import java.util.GregorianCalendar;
+import java.util.Properties;
+
+import org.json.JSONException;
+import org.json.JSONWriter;
 
 import com.metaweb.gridworks.expr.util.CalendarParser;
 import com.metaweb.gridworks.expr.util.CalendarParserException;

src/main/java/com/metaweb/gridworks/gel/ControlFunctionRegistry.java

@@ -34,7 +34,6 @@ import com.metaweb.gridworks.expr.functions.math.Pow;
 import com.metaweb.gridworks.expr.functions.math.Round;
 import com.metaweb.gridworks.expr.functions.math.Sum;
 import com.metaweb.gridworks.expr.functions.strings.Contains;
-import com.metaweb.gridworks.expr.functions.strings.SplitByLengths;
 import com.metaweb.gridworks.expr.functions.strings.Diff;
 import com.metaweb.gridworks.expr.functions.strings.EndsWith;
 import com.metaweb.gridworks.expr.functions.strings.Fingerprint;
@@ -51,6 +50,7 @@ import com.metaweb.gridworks.expr.functions.strings.ReplaceChars;
 import com.metaweb.gridworks.expr.functions.strings.SHA1;
 import com.metaweb.gridworks.expr.functions.strings.Split;
 import com.metaweb.gridworks.expr.functions.strings.SplitByCharType;
+import com.metaweb.gridworks.expr.functions.strings.SplitByLengths;
 import com.metaweb.gridworks.expr.functions.strings.StartsWith;
 import com.metaweb.gridworks.expr.functions.strings.ToLowercase;
 import com.metaweb.gridworks.expr.functions.strings.ToTitlecase;

src/main/java/com/metaweb/gridworks/model/Project.java

@@ -20,6 +20,9 @@ import java.util.zip.ZipEntry;
 import java.util.zip.ZipInputStream;
 import java.util.zip.ZipOutputStream;
 
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
 import com.metaweb.gridworks.Gridworks;
 import com.metaweb.gridworks.ProjectManager;
 import com.metaweb.gridworks.ProjectMetadata;
@@ -40,6 +43,8 @@ public class Project {
     transient public ProcessManager processManager = new ProcessManager();
     transient public Date lastSave = new Date();
     
+    final static Logger logger = LoggerFactory.getLogger("project");
+    
     static public long generateID() {
         return System.currentTimeMillis() + Math.round(Math.random() * 1000000000000L);
     }
@@ -68,7 +73,7 @@ public class Project {
             } catch (Exception e) {
                 e.printStackTrace();
                 
-                Gridworks.log("Failed to save project " + id);
+                logger.warn("Failed to save project {}", id);
                 return;
             }
             
@@ -86,7 +91,7 @@ public class Project {
             
             lastSave = new Date();
             
-            Gridworks.log("Saved project " + id + ".");
+            logger.info("Saved project '{}'",id);
         }
     }
     
@@ -213,10 +218,8 @@ public class Project {
         
         project.columnModel.setMaxCellIndex(maxCellCount - 1);
         
-        Gridworks.log(
+        logger.info(
-            "Loaded project " + id + " from disk in " + 
+            "Loaded project {} from disk in {} sec(s)",id,Long.toString((System.currentTimeMillis() - start) / 1000)
-            (System.currentTimeMillis() - start) / 1000 + 
-            " sec(s)"
         );
         
         project.recomputeRowContextDependencies();

src/main/java/com/metaweb/gridworks/oauth/Credentials.java

@@ -25,6 +25,7 @@ public class Credentials {
         }
         
         public String getCookieName(Provider provider) {
+            if (provider == null) throw new RuntimeException("Provider can't be null");
             return provider.getHost() + "_" + postfix;
         }
     };
@@ -36,10 +37,8 @@ public class Credentials {
 
     public static void setCredentials(HttpServletResponse response, Credentials credentials, Type type, int max_age) {
         String name = type.getCookieName(credentials.getProvider());
-        Cookie c = new Cookie(name, credentials.toString());
+        String value = credentials.toString();
-        c.setPath("/");
+        CookiesUtilities.setCookie(response, name, value, max_age);
-        c.setMaxAge(max_age);
-        response.addCookie(c);            
     }
     
     public static void deleteCredentials(HttpServletRequest request, HttpServletResponse response, Provider provider, Type type) {
@@ -60,6 +59,8 @@ public class Credentials {
         if (token == null) throw new RuntimeException("Could not find " + TOKEN + " in auth credentials");
         this.secret = secret;
         if (secret == null) throw new RuntimeException("Could not find " + SECRET + " in auth credentials");
+        this.provider = provider;
+        if (provider == null) throw new RuntimeException("Provider can't be null");
     }
 
     public String getToken() {

src/main/java/com/metaweb/gridworks/oauth/OAuthUtilities.java

@@ -3,10 +3,15 @@ package com.metaweb.gridworks.oauth;
 import java.util.HashMap;
 import java.util.Map;
 
+import javax.servlet.http.HttpServletRequest;
+
 import oauth.signpost.OAuthConsumer;
 import oauth.signpost.OAuthProvider;
 import oauth.signpost.commonshttp.CommonsHttpOAuthConsumer;
 import oauth.signpost.commonshttp.CommonsHttpOAuthProvider;
+import oauth.signpost.http.HttpParameters;
+
+import com.metaweb.gridworks.util.FreebaseUtils;
 
 public class OAuthUtilities {
     
@@ -14,30 +19,43 @@ public class OAuthUtilities {
     static final private Map<String,String[]> infos = new HashMap<String,String[]>();
    
     static private final String[] FREEBASE_OAUTH_INFO = { "#9202a8c04000641f80000000150979b7" , "8ded7babfad2f94f4c77e39bbd6c90f31939999b"};
-    static private final String[] SANDBOX_OAUTH_INFO  = { "#9202a8c04000641f800000001505964a" , "a816b13991bf1d191ad1c371f3c230feca6a11e2"};
 
     static {
-        providers.put("freebase", new FreebaseProvider("www.freebase.com"));
+        Provider freebase = new FreebaseProvider(FreebaseUtils.FREEBASE_HOST);
-        providers.put("sandbox", new FreebaseProvider("www.sandbox-freebase.com"));
+        providers.put(freebase.getHost(), freebase);
         
-        infos.put("www.freebase.com", FREEBASE_OAUTH_INFO);
+        infos.put(freebase.getHost(), FREEBASE_OAUTH_INFO);
-        infos.put("www.sandbox-freebase.com", SANDBOX_OAUTH_INFO);
     }
     
     public static Provider getProvider(String name) {
         return (name == null) ? null : providers.get(name);
     }
 
+    public static Provider getProvider(HttpServletRequest request) {
+        String path = request.getPathInfo().substring(1);
+        int slash = path.lastIndexOf('/');
+        String provider_str = path.substring(slash + 1);
+        Provider provider = getProvider(provider_str);
+        if (provider == null) throw new RuntimeException("Can't find OAuth provider '" + provider_str + "'");
+        return provider;
+    }
+    
     public static OAuthConsumer getConsumer(Provider provider) {
         if (provider == null) throw new RuntimeException("Provider can't be null");
         String[] consumer_info = infos.get(provider.getHost());
         if (consumer_info == null) throw new RuntimeException("Can't find secrets for provider '" + provider.getHost() + "'");
-        return new CommonsHttpOAuthConsumer(consumer_info[0],consumer_info[1]);
+        OAuthConsumer oauthConsumer = new CommonsHttpOAuthConsumer(consumer_info[0],consumer_info[1]);
+        HttpParameters params = new HttpParameters();
+        params.put("realm", provider.getHost());
+        oauthConsumer.setAdditionalParameters(params);
+        return oauthConsumer;
     }
 
     public static OAuthConsumer getConsumer(Credentials credentials, Provider provider) {
         OAuthConsumer consumer = getConsumer(provider);
+        if (credentials != null) {
             consumer.setTokenWithSecret(credentials.getToken(), credentials.getSecret());
+        }
         return consumer;
     }
     

src/main/java/com/metaweb/gridworks/util/CookiesUtilities.java

@@ -6,6 +6,9 @@ import javax.servlet.http.HttpServletResponse;
 
 public class CookiesUtilities {
 
+    public static final String DOMAIN = "127.0.0.1";
+    public static final String PATH = "/";
+    
     public static Cookie getCookie(HttpServletRequest request, String name) {
         if (name == null) throw new RuntimeException("cookie name cannot be null");
         Cookie cookie = null;
@@ -20,15 +23,20 @@ public class CookiesUtilities {
         return cookie;
     }
 
-    public static void deleteCookie(HttpServletRequest request, HttpServletResponse response, String name) {
+    public static void setCookie(HttpServletResponse response, String name, String value, int max_age) {
-        Cookie cookie = getCookie(request, name);
+        Cookie c = new Cookie(name, value);
-        if (cookie != null) {
+        c.setDomain(DOMAIN);
-            Cookie delCookie = new Cookie(cookie.getName(), cookie.getValue());
+        c.setPath(PATH);
-            delCookie.setDomain(cookie.getDomain());
+        c.setMaxAge(max_age);
-            delCookie.setPath(cookie.getPath());
+        response.addCookie(c);            
-            delCookie.setMaxAge(0);
-            response.addCookie(delCookie);            
     }
+
+    public static void deleteCookie(HttpServletRequest request, HttpServletResponse response, String name) {
+        Cookie c = new Cookie(name, "");
+        c.setDomain(DOMAIN);
+        c.setPath(PATH);
+        c.setMaxAge(0);
+        response.addCookie(c);            
     }
     
 }

src/main/java/com/metaweb/gridworks/util/FreebaseUtils.java

@@ -0,0 +1,115 @@
+package com.metaweb.gridworks.util;
+
+import java.io.IOException;
+import java.util.ArrayList;
+import java.util.List;
+
+import javax.servlet.http.HttpServletRequest;
+
+import oauth.signpost.OAuthConsumer;
+import oauth.signpost.exception.OAuthCommunicationException;
+import oauth.signpost.exception.OAuthExpectationFailedException;
+import oauth.signpost.exception.OAuthMessageSignerException;
+
+import org.apache.http.Header;
+import org.apache.http.HttpResponse;
+import org.apache.http.NameValuePair;
+import org.apache.http.client.ClientProtocolException;
+import org.apache.http.client.HttpClient;
+import org.apache.http.client.entity.UrlEncodedFormEntity;
+import org.apache.http.client.methods.HttpGet;
+import org.apache.http.client.methods.HttpPost;
+import org.apache.http.impl.client.DefaultHttpClient;
+import org.apache.http.message.BasicNameValuePair;
+import org.apache.http.params.CoreProtocolPNames;
+import org.apache.http.util.EntityUtils;
+import org.json.JSONException;
+import org.json.JSONObject;
+
+import com.metaweb.gridworks.Gridworks;
+import com.metaweb.gridworks.oauth.Credentials;
+import com.metaweb.gridworks.oauth.OAuthUtilities;
+import com.metaweb.gridworks.oauth.Provider;
+
+public class FreebaseUtils {
+
+    static final public String FREEBASE_HOST = "www.freebase.com";
+    static final public String FREEBASE_SANDBOX_HOST = "www.sandbox-freebase.com";
+    
+    static final private String FREEQ_URL = "http://data.labs.freebase.com/freeq/prod/";
+    
+    private static String getUserInfoURL(String host) {
+        return "http://" + host + "/api/service/user_info";
+    }
+
+    public static String getUserInfo(Credentials credentials, Provider provider) 
+        throws OAuthMessageSignerException, OAuthExpectationFailedException, OAuthCommunicationException, ClientProtocolException, IOException {
+        
+        OAuthConsumer consumer = OAuthUtilities.getConsumer(credentials, provider);
+        
+        HttpGet httpRequest = new HttpGet(getUserInfoURL(provider.getHost()));
+        httpRequest.getParams().setParameter(CoreProtocolPNames.USER_AGENT, "Gridworks " + Gridworks.getVersion());
+        
+        // this is required by the Metaweb API to avoid XSS
+        httpRequest.setHeader("X-Requested-With", "1");
+        
+        // sign the request with the oauth library
+        consumer.sign(httpRequest);
+
+        // execute the request
+        HttpClient httpClient = new DefaultHttpClient();
+        HttpResponse httpResponse = httpClient.execute(httpRequest);
+        
+        // return the results
+        return EntityUtils.toString(httpResponse.getEntity());
+    }
+    
+    public static String uploadTriples(HttpServletRequest request, String info, String triples) 
+        throws OAuthMessageSignerException, OAuthExpectationFailedException, OAuthCommunicationException, ClientProtocolException, JSONException, IOException {
+        
+        Provider provider = OAuthUtilities.getProvider(FREEBASE_HOST);
+        
+        Credentials credentials = Credentials.getCredentials(request, provider, Credentials.Type.ACCESS);
+        
+        JSONObject user_info = new JSONObject(getUserInfo(credentials, provider));
+        if (user_info.has("username")) {
+            
+            List<NameValuePair> formparams = new ArrayList<NameValuePair>();
+            formparams.add(new BasicNameValuePair("user", user_info.getString("username")));
+            formparams.add(new BasicNameValuePair("action_type", "LOAD_TRIPLE"));
+            formparams.add(new BasicNameValuePair("operator", "gridworks"));
+            formparams.add(new BasicNameValuePair("mdo_info", info));
+            formparams.add(new BasicNameValuePair("graphport", provider.getHost().equals(FREEBASE_HOST) ? "otg" : "sandbox"));
+            formparams.add(new BasicNameValuePair("payload", triples));
+            formparams.add(new BasicNameValuePair("check_params", "false"));
+            UrlEncodedFormEntity entity = new UrlEncodedFormEntity(formparams, "UTF-8");
+
+            HttpPost httpRequest = new HttpPost(FREEQ_URL);
+            httpRequest.setEntity(entity);
+            
+            HttpPost surrogateRequest = new HttpPost(getUserInfoURL(FREEBASE_HOST));
+            surrogateRequest.setEntity(entity);
+            
+            OAuthConsumer consumer = OAuthUtilities.getConsumer(credentials, provider);
+
+            consumer.sign(surrogateRequest);
+
+            Header[] h = surrogateRequest.getHeaders("Authorization");
+            if (h.length > 0) {
+                httpRequest.setHeader("X-Freebase-Credentials", h[0].getValue());
+            } else {
+                throw new RuntimeException("Couldn't find the oauth signature header in the surrogate request");
+            }
+            
+            // execute the request
+            HttpClient httpClient = new DefaultHttpClient();
+            HttpResponse httpResponse = httpClient.execute(httpRequest);
+            
+            // return the results
+            return EntityUtils.toString(httpResponse.getEntity());
+        } else {
+            throw new RuntimeException("Invalid credentials");
+        }
+    }
+
+}

src/main/webapp/WEB-INF/log4j.properties

@@ -1,8 +0,0 @@
-log4j.rootLogger=INFO, console
-log4j.logger.org.mortbay.jetty=ERROR
-
-log4j.appender.console=org.apache.log4j.ConsoleAppender
-log4j.appender.console.layout=org.apache.log4j.PatternLayout
-#log4j.appender.console.layout.ConversionPattern=[%p] %m%n
-#log4j.appender.console.layout.ConversionPattern=%d [%t] %-5p %c(%L) - %m%n
-log4j.appender.console.layout.ConversionPattern=[%p] %c(%L) - %m%n

src/main/webapp/externals/blockui/jquery.blockui.js

@@ -1,478 +0,0 @@
-/*!
- * jQuery blockUI plugin
- * Version 2.31 (06-JAN-2010)
- * @requires jQuery v1.2.3 or later
- *
- * Examples at: http://malsup.com/jquery/block/
- * Copyright (c) 2007-2008 M. Alsup
- * Dual licensed under the MIT and GPL licenses:
- * http://www.opensource.org/licenses/mit-license.php
- * http://www.gnu.org/licenses/gpl.html
- *
- * Thanks to Amir-Hossein Sobhi for some excellent contributions!
- */
-
-;(function($) {
-
-if (/1\.(0|1|2)\.(0|1|2)/.test($.fn.jquery) || /^1.1/.test($.fn.jquery)) {
-  alert('blockUI requires jQuery v1.2.3 or later!  You are using v' + $.fn.jquery);
-  return;
-}
-
-$.fn._fadeIn = $.fn.fadeIn;
-
-var noOp = function() {};
-
-// this bit is to ensure we don't call setExpression when we shouldn't (with extra muscle to handle
-// retarded userAgent strings on Vista)
-var mode = document.documentMode || 0;
-var setExpr = $.browser.msie && (($.browser.version < 8 && !mode) || mode < 8);
-var ie6 = $.browser.msie && /MSIE 6.0/.test(navigator.userAgent) && !mode;
-
-// global $ methods for blocking/unblocking the entire page
-$.blockUI   = function(opts) { install(window, opts); };
-$.unblockUI = function(opts) { remove(window, opts); };
-
-// convenience method for quick growl-like notifications  (http://www.google.com/search?q=growl)
-$.growlUI = function(title, message, timeout, onClose) {
-  var $m = $('<div class="growlUI"></div>');
-  if (title) $m.append('<h1>'+title+'</h1>');
-  if (message) $m.append('<h2>'+message+'</h2>');
-  if (timeout == undefined) timeout = 3000;
-  $.blockUI({
-    message: $m, fadeIn: 700, fadeOut: 1000, centerY: false,
-    timeout: timeout, showOverlay: false,
-    onUnblock: onClose, 
-    css: $.blockUI.defaults.growlCSS
-  });
-};
-
-// plugin method for blocking element content
-$.fn.block = function(opts) {
-  return this.unblock({ fadeOut: 0 }).each(function() {
-    if ($.css(this,'position') == 'static')
-      this.style.position = 'relative';
-    if ($.browser.msie)
-      this.style.zoom = 1; // force 'hasLayout'
-    install(this, opts);
-  });
-};
-
-// plugin method for unblocking element content
-$.fn.unblock = function(opts) {
-  return this.each(function() {
-    remove(this, opts);
-  });
-};
-
-$.blockUI.version = 2.31; // 2nd generation blocking at no extra cost!
-
-// override these in your code to change the default behavior and style
-$.blockUI.defaults = {
-  // message displayed when blocking (use null for no message)
-  message:  '<h1>Please wait...</h1>',
-
-  title: null,    // title string; only used when theme == true
-  draggable: true,  // only used when theme == true (requires jquery-ui.js to be loaded)
-  
-  theme: false, // set to true to use with jQuery UI themes
-  
-  // styles for the message when blocking; if you wish to disable
-  // these and use an external stylesheet then do this in your code:
-  // $.blockUI.defaults.css = {};
-  css: {
-    padding:  0,
-    margin:    0,
-    width:    '30%',
-    top:    '40%',
-    left:    '35%',
-    textAlign:  'center',
-    color:    '#000',
-    border:    '3px solid #aaa',
-    backgroundColor:'#fff',
-    cursor:    'wait'
-  },
-  
-  // minimal style set used when themes are used
-  themedCSS: {
-    width:  '30%',
-    top:  '40%',
-    left:  '35%'
-  },
-
-  // styles for the overlay
-  overlayCSS:  {
-    backgroundColor: '#000',
-    opacity:       0.6,
-    cursor:         'wait'
-  },
-
-  // styles applied when using $.growlUI
-  growlCSS: {
-    width:    '350px',
-    top:    '10px',
-    left:     '',
-    right:    '10px',
-    border:   'none',
-    padding:  '5px',
-    opacity:  0.6,
-    cursor:   'default',
-    color:    '#fff',
-    backgroundColor: '#000',
-    '-webkit-border-radius': '10px',
-    '-moz-border-radius':   '10px'
-  },
-  
-  // IE issues: 'about:blank' fails on HTTPS and javascript:false is s-l-o-w
-  // (hat tip to Jorge H. N. de Vasconcelos)
-  iframeSrc: /^https/i.test(window.location.href || '') ? 'javascript:false' : 'about:blank',
-
-  // force usage of iframe in non-IE browsers (handy for blocking applets)
-  forceIframe: false,
-
-  // z-index for the blocking overlay
-  baseZ: 1000,
-
-  // set these to true to have the message automatically centered
-  centerX: true, // <-- only effects element blocking (page block controlled via css above)
-  centerY: true,
-
-  // allow body element to be stetched in ie6; this makes blocking look better
-  // on "short" pages.  disable if you wish to prevent changes to the body height
-  allowBodyStretch: true,
-
-  // enable if you want key and mouse events to be disabled for content that is blocked
-  bindEvents: true,
-
-  // be default blockUI will supress tab navigation from leaving blocking content
-  // (if bindEvents is true)
-  constrainTabKey: true,
-
-  // fadeIn time in millis; set to 0 to disable fadeIn on block
-  fadeIn:  200,
-
-  // fadeOut time in millis; set to 0 to disable fadeOut on unblock
-  fadeOut:  400,
-
-  // time in millis to wait before auto-unblocking; set to 0 to disable auto-unblock
-  timeout: 0,
-
-  // disable if you don't want to show the overlay
-  showOverlay: true,
-
-  // if true, focus will be placed in the first available input field when
-  // page blocking
-  focusInput: true,
-
-  // suppresses the use of overlay styles on FF/Linux (due to performance issues with opacity)
-  applyPlatformOpacityRules: true,
-  
-  // callback method invoked when fadeIn has completed and blocking message is visible
-  onBlock: null,
-
-  // callback method invoked when unblocking has completed; the callback is
-  // passed the element that has been unblocked (which is the window object for page
-  // blocks) and the options that were passed to the unblock call:
-  //   onUnblock(element, options)
-  onUnblock: null,
-
-  // don't ask; if you really must know: http://groups.google.com/group/jquery-en/browse_thread/thread/36640a8730503595/2f6a79a77a78e493#2f6a79a77a78e493
-  quirksmodeOffsetHack: 4
-};
-
-// private data and functions follow...
-
-var pageBlock = null;
-var pageBlockEls = [];
-
-function install(el, opts) {
-  var full = (el == window);
-  var msg = opts && opts.message !== undefined ? opts.message : undefined;
-  opts = $.extend({}, $.blockUI.defaults, opts || {});
-  opts.overlayCSS = $.extend({}, $.blockUI.defaults.overlayCSS, opts.overlayCSS || {});
-  var css = $.extend({}, $.blockUI.defaults.css, opts.css || {});
-  var themedCSS = $.extend({}, $.blockUI.defaults.themedCSS, opts.themedCSS || {});
-  msg = msg === undefined ? opts.message : msg;
-
-  // remove the current block (if there is one)
-  if (full && pageBlock)
-    remove(window, {fadeOut:0});
-
-  // if an existing element is being used as the blocking content then we capture
-  // its current place in the DOM (and current display style) so we can restore
-  // it when we unblock
-  if (msg && typeof msg != 'string' && (msg.parentNode || msg.jquery)) {
-    var node = msg.jquery ? msg[0] : msg;
-    var data = {};
-    $(el).data('blockUI.history', data);
-    data.el = node;
-    data.parent = node.parentNode;
-    data.display = node.style.display;
-    data.position = node.style.position;
-    if (data.parent)
-      data.parent.removeChild(node);
-  }
-
-  var z = opts.baseZ;
-
-  // blockUI uses 3 layers for blocking, for simplicity they are all used on every platform;
-  // layer1 is the iframe layer which is used to supress bleed through of underlying content
-  // layer2 is the overlay layer which has opacity and a wait cursor (by default)
-  // layer3 is the message content that is displayed while blocking
-
-  var lyr1 = ($.browser.msie || opts.forceIframe) 
-    ? $('<iframe class="blockUI" style="z-index:'+ (z++) +';display:none;border:none;margin:0;padding:0;position:absolute;width:100%;height:100%;top:0;left:0" src="'+opts.iframeSrc+'"></iframe>')
-    : $('<div class="blockUI" style="display:none"></div>');
-  var lyr2 = $('<div class="blockUI blockOverlay" style="z-index:'+ (z++) +';display:none;border:none;margin:0;padding:0;width:100%;height:100%;top:0;left:0"></div>');
-  
-  var lyr3;
-  if (opts.theme && full) {
-    var s = '<div class="blockUI blockMsg blockPage ui-dialog ui-widget ui-corner-all" style="z-index:'+z+';display:none;position:fixed">' +
-          '<div class="ui-widget-header ui-dialog-titlebar blockTitle">'+(opts.title || '&nbsp;')+'</div>' +
-          '<div class="ui-widget-content ui-dialog-content"></div>' +
-        '</div>';
-    lyr3 = $(s);
-  }
-  else {
-    lyr3 = full ? $('<div class="blockUI blockMsg blockPage" style="z-index:'+z+';display:none;position:fixed"></div>')
-          : $('<div class="blockUI blockMsg blockElement" style="z-index:'+z+';display:none;position:absolute"></div>');
-  }               
-
-  // if we have a message, style it
-  if (msg) {
-    if (opts.theme) {
-      lyr3.css(themedCSS);
-      lyr3.addClass('ui-widget-content');
-    }
-    else 
-      lyr3.css(css);
-  }
-
-  // style the overlay
-  if (!opts.applyPlatformOpacityRules || !($.browser.mozilla && /Linux/.test(navigator.platform)))
-    lyr2.css(opts.overlayCSS);
-  lyr2.css('position', full ? 'fixed' : 'absolute');
-
-  // make iframe layer transparent in IE
-  if ($.browser.msie || opts.forceIframe)
-    lyr1.css('opacity',0.0);
-
-  //$([lyr1[0],lyr2[0],lyr3[0]]).appendTo(full ? 'body' : el);
-  var layers = [lyr1,lyr2,lyr3], $par = full ? $('body') : $(el);
-  $.each(layers, function() {
-    this.appendTo($par);
-  });
-  
-  if (opts.theme && opts.draggable && $.fn.draggable) {
-    lyr3.draggable({
-      handle: '.ui-dialog-titlebar',
-      cancel: 'li'
-    });
-  }
-
-  // ie7 must use absolute positioning in quirks mode and to account for activex issues (when scrolling)
-  var expr = setExpr && (!$.boxModel || $('object,embed', full ? null : el).length > 0);
-  if (ie6 || expr) {
-    // give body 100% height
-    if (full && opts.allowBodyStretch && $.boxModel)
-      $('html,body').css('height','100%');
-
-    // fix ie6 issue when blocked element has a border width
-    if ((ie6 || !$.boxModel) && !full) {
-      var t = sz(el,'borderTopWidth'), l = sz(el,'borderLeftWidth');
-      var fixT = t ? '(0 - '+t+')' : 0;
-      var fixL = l ? '(0 - '+l+')' : 0;
-    }
-
-    // simulate fixed position
-    $.each([lyr1,lyr2,lyr3], function(i,o) {
-      var s = o[0].style;
-      s.position = 'absolute';
-      if (i < 2) {
-        full ? s.setExpression('height','Math.max(document.body.scrollHeight, document.body.offsetHeight) - (jQuery.boxModel?0:'+opts.quirksmodeOffsetHack+') + "px"')
-           : s.setExpression('height','this.parentNode.offsetHeight + "px"');
-        full ? s.setExpression('width','jQuery.boxModel && document.documentElement.clientWidth || document.body.clientWidth + "px"')
-           : s.setExpression('width','this.parentNode.offsetWidth + "px"');
-        if (fixL) s.setExpression('left', fixL);
-        if (fixT) s.setExpression('top', fixT);
-      }
-      else if (opts.centerY) {
-        if (full) s.setExpression('top','(document.documentElement.clientHeight || document.body.clientHeight) / 2 - (this.offsetHeight / 2) + (blah = document.documentElement.scrollTop ? document.documentElement.scrollTop : document.body.scrollTop) + "px"');
-        s.marginTop = 0;
-      }
-      else if (!opts.centerY && full) {
-        var top = (opts.css && opts.css.top) ? parseInt(opts.css.top) : 0;
-        var expression = '((document.documentElement.scrollTop ? document.documentElement.scrollTop : document.body.scrollTop) + '+top+') + "px"';
-        s.setExpression('top',expression);
-      }
-    });
-  }
-
-  // show the message
-  if (msg) {
-    if (opts.theme)
-      lyr3.find('.ui-widget-content').append(msg);
-    else
-      lyr3.append(msg);
-    if (msg.jquery || msg.nodeType)
-      $(msg).show();
-  }
-
-  if (($.browser.msie || opts.forceIframe) && opts.showOverlay)
-    lyr1.show(); // opacity is zero
-  if (opts.fadeIn) {
-    var cb = opts.onBlock ? opts.onBlock : noOp;
-    var cb1 = (opts.showOverlay && !msg) ? cb : noOp;
-    var cb2 = msg ? cb : noOp;
-    if (opts.showOverlay)
-      lyr2._fadeIn(opts.fadeIn, cb1);
-    if (msg)
-      lyr3._fadeIn(opts.fadeIn, cb2);
-  }
-  else {
-    if (opts.showOverlay)
-      lyr2.show();
-    if (msg)
-      lyr3.show();
-    if (opts.onBlock)
-      opts.onBlock();
-  }
-
-  // bind key and mouse events
-  bind(1, el, opts);
-
-  if (full) {
-    pageBlock = lyr3[0];
-    pageBlockEls = $(':input:enabled:visible',pageBlock);
-    if (opts.focusInput)
-      setTimeout(focus, 20);
-  }
-  else
-    center(lyr3[0], opts.centerX, opts.centerY);
-
-  if (opts.timeout) {
-    // auto-unblock
-    var to = setTimeout(function() {
-      full ? $.unblockUI(opts) : $(el).unblock(opts);
-    }, opts.timeout);
-    $(el).data('blockUI.timeout', to);
-  }
-};
-
-// remove the block
-function remove(el, opts) {
-  var full = (el == window);
-  var $el = $(el);
-  var data = $el.data('blockUI.history');
-  var to = $el.data('blockUI.timeout');
-  if (to) {
-    clearTimeout(to);
-    $el.removeData('blockUI.timeout');
-  }
-  opts = $.extend({}, $.blockUI.defaults, opts || {});
-  bind(0, el, opts); // unbind events
-  
-  var els;
-  if (full) // crazy selector to handle odd field errors in ie6/7
-    els = $('body').children().filter('.blockUI').add('body > .blockUI');
-  else
-    els = $('.blockUI', el);
-
-  if (full)
-    pageBlock = pageBlockEls = null;
-
-  if (opts.fadeOut) {
-    els.fadeOut(opts.fadeOut);
-    setTimeout(function() { reset(els,data,opts,el); }, opts.fadeOut);
-  }
-  else
-    reset(els, data, opts, el);
-};
-
-// move blocking element back into the DOM where it started
-function reset(els,data,opts,el) {
-  els.each(function(i,o) {
-    // remove via DOM calls so we don't lose event handlers
-    if (this.parentNode)
-      this.parentNode.removeChild(this);
-  });
-
-  if (data && data.el) {
-    data.el.style.display = data.display;
-    data.el.style.position = data.position;
-    if (data.parent)
-      data.parent.appendChild(data.el);
-    $(el).removeData('blockUI.history');
-  }
-
-  if (typeof opts.onUnblock == 'function')
-    opts.onUnblock(el,opts);
-};
-
-// bind/unbind the handler
-function bind(b, el, opts) {
-  var full = el == window, $el = $(el);
-
-  // don't bother unbinding if there is nothing to unbind
-  if (!b && (full && !pageBlock || !full && !$el.data('blockUI.isBlocked')))
-    return;
-  if (!full)
-    $el.data('blockUI.isBlocked', b);
-
-  // don't bind events when overlay is not in use or if bindEvents is false
-  if (!opts.bindEvents || (b && !opts.showOverlay)) 
-    return;
-
-  // bind anchors and inputs for mouse and key events
-  var events = 'mousedown mouseup keydown keypress';
-  b ? $(document).bind(events, opts, handler) : $(document).unbind(events, handler);
-
-// former impl...
-//     var $e = $('a,:input');
-//     b ? $e.bind(events, opts, handler) : $e.unbind(events, handler);
-};
-
-// event handler to suppress keyboard/mouse events when blocking
-function handler(e) {
-  // allow tab navigation (conditionally)
-  if (e.keyCode && e.keyCode == 9) {
-    if (pageBlock && e.data.constrainTabKey) {
-      var els = pageBlockEls;
-      var fwd = !e.shiftKey && e.target == els[els.length-1];
-      var back = e.shiftKey && e.target == els[0];
-      if (fwd || back) {
-        setTimeout(function(){focus(back)},10);
-        return false;
-      }
-    }
-  }
-  // allow events within the message content
-  if ($(e.target).parents('div.blockMsg').length > 0)
-    return true;
-
-  // allow events for content that is not being blocked
-  return $(e.target).parents().children().filter('div.blockUI').length == 0;
-};
-
-function focus(back) {
-  if (!pageBlockEls)
-    return;
-  var e = pageBlockEls[back===true ? pageBlockEls.length-1 : 0];
-  if (e)
-    e.focus();
-};
-
-function center(el, x, y) {
-  var p = el.parentNode, s = el.style;
-  var l = ((p.offsetWidth - el.offsetWidth)/2) - sz(p,'borderLeftWidth');
-  var t = ((p.offsetHeight - el.offsetHeight)/2) - sz(p,'borderTopWidth');
-  if (x) s.left = l > 0 ? (l+'px') : '0';
-  if (y) s.top  = t > 0 ? (t+'px') : '0';
-};
-
-function sz(el, p) {
-  return parseInt($.css(el,p))||0;
-};
-
-})(jQuery);
-

src/main/webapp/scripts/dialogs/freebase-loading-dialog.js

@@ -5,76 +5,118 @@ function FreebaseLoadingDialog() {
 FreebaseLoadingDialog.prototype._createDialog = function() {
     var self = this;
     var frame = DialogSystem.createDialog();
-    frame.width("900px");
+    frame.width("800px");
     
     var header = $('<div></div>').addClass("dialog-header").text('Load Data into Freebase').appendTo(frame);
     var body = $('<div></div>').addClass("dialog-body").appendTo(frame);
     var footer = $(
         '<div class="dialog-footer">' +
            '<table width="100%"><tr>' +
-             '<td class="left" style="text-align: left"></td>' + 
+             '<td class="left" style="text-align: left" width="40%" nowrap="true"></td>' + 
-             '<td class="right" style="text-align: right"></td>' +
+             '<td class="center" style="text-align: center" width="20%" nowrap="true"></td>' +
+             '<td class="right" style="text-align: right" width="40%" nowrap="true"></td>' +
            '</tr></table>' +
         '</div>'
     ).appendTo(frame);
             
     $.post(
-        "/command/export-rows?" + $.param({ 
+        "/command/export-rows", 
+        { 
             project: theProject.id, 
             format : "tripleloader" 
-        }),
+        },
-        {},
         function(data) {
-            frame.find(".dialog-body").html('<div class="freebase-loading-tripleloader-data">' + data + '</pre>');
+            console.log(data);
+            body.html(
+                '<div class="freebase-loading-tripleloader-data">' + data + '</div>' +
+                '<div class="freebase-loading-tripleloader-info">' +
+                  '<div>Describe the data you\'re about to load &not;</div>' +
+                  '<textarea></textarea>' +
+                '</div>'
+            );
             self._level = DialogSystem.showDialog(frame);
         }
     );
     
     var left_footer = footer.find(".left");   
-    $('<button></button>').text("Cancel").click(function() { 
+    
+    var cancel_button = $('<button id="freebase-loading-cancel"></button>').text("Cancel").click(function() { 
         self._dismiss(); 
     }).appendTo(left_footer);
     
+    var center_footer = footer.find(".center");    
+    
+    var authorization = $('<div>').addClass("freebase-loading-authorization").hide().appendTo(center_footer);
+
     var right_footer = footer.find(".right");    
     
-    //$('<div class="freebase-loading-authorization signedin" style="display: none">Signed in as: <span class="user"></span></div>').appendTo(right_footer);
+    var selector = $('<span>').addClass("freebase-loading-graph-selector").html("Load this data into " +
-    
-    var selector = $('<span>').addClass("freebase-loading-graph-selector").html("Load into " +
         '<input type="radio" bind="sandbox" id="freebase-loading-graph-selector-sandbox" name="graph-selector" checked="checked" value="sandbox"/><label class="sandbox" for="freebase-loading-graph-selector-sandbox" title="Load into the sandbox">sandbox</label>' +
-        '<input type="radio" bind="otg" id="freebase-loading-graph-selector-otg" name="graph-selector" value="otg"/><label class="otg" for="freebase-loading-graph-selector-otg" title="Load into Freebase">freebase</label>'
+        '<input type="radio" bind="freebase" id="freebase-loading-graph-selector-freebase" name="graph-selector" value="freebase"/><label class="freebase" for="freebase-loading-graph-selector-freebase" title="Load into Freebase">freebase</label>'
     ).buttonset().appendTo(right_footer);
 
-    $('<button></button>').text("Load").click(function() { 
+    var load_button = $('<button id="freebase-loading-load"></button>').text("Sign In").appendTo(right_footer);
-        self._check_authorization(self._load); 
-    }).appendTo(right_footer);
     
     this._elmts = DOM.bind(frame);
     
-    this._elmts.otg.click(function() {
+    var provider = "www.freebase.com";
-        if (!confirm("are you sure?")) {
-            self._elmts.sandbox.attr("checked","checked");
-            self._elmts.otg.removeAttr("checked");
-            selector.find("input").button('refresh');
-        }
-    });
 
-};
+    var check_authorization = function() {
-
+        $.get("/command/check-authorization/" + provider, function(data) {
-FreebaseLoadingDialog.prototype._check_authorization = function(cont) {
-    var freebase = this._elmts.otg.attr("checked");
-    var provider = (freebase) ? "freebase" : "sandbox";
-    $.get("/command/check-authorization",{ "provider" : provider }, function(data) {
             if ("status" in data && data.status == "200 OK") {
-            if (typeof cont == "function") cont();
+                authorization.html('Signed in as: <a target="_new" href="http://www.freebase.com/view/user/' + data.username + '">' + data.username + '</a> | <a href="javascript:{}" bind="signout">Sign Out</a>').show();
+                DOM.bind(authorization).signout.click(function() {
+                    Sign.signout(check_authorization,provider);
+                });
+                load_button.text("Load").unbind().click(function() {
+                    self._load(self);
+                });
             } else {
-            alert("Sorry, we're working very hard to make this happen.");
+                authorization.html("").hide();
-            //Sign.signin(cont,provider);
+                load_button.text("Sign In").removeAttr("disabled").unbind().click(function() {
+                    Sign.signin(check_authorization,provider);
+                });                    
             }
         },"json");
     };
     
-FreebaseLoadingDialog.prototype._load = function() {
+    check_authorization();
-    // do the real loading here
+    
+    this._elmts.sandbox.click(function() {
+        //check_authorization();
+    });
+    
+    this._elmts.freebase.click(function() {
+        if (!confirm("Are you sure your data is clean enough to enter Freebase?")) {
+            self._elmts.sandbox.attr("checked","checked");
+            self._elmts.freebase.removeAttr("checked");
+            selector.find("input").button('refresh');
+        }
+        //check_authorization();
+    });
+};
+
+FreebaseLoadingDialog.prototype._load = function(self) {
+    $.post("/command/upload-data", 
+        {
+            project: theProject.id, 
+            "graph" : ($("#freebase-loading-graph-selector-freebase").attr("checked")) ? "otg" : "sandbox",
+            "info" : $("#freebase-loading-tripleloader-info textarea").val()
+        }, 
+        function(data) {
+            var body = $(".dialog-body");
+            if ("status" in data && data.status == "200 OK") {
+                body.html('<div class="freebase-loading-tripleloader-message"><h2>Data successfully loaded!</h2>' + data.message + '</div>');
+            } else {
+                body.html('<div class="freebase-loading-tripleloader-message"><h2>Error loading data!</h2><pre>' + JSON.stringify(data,null,2) + '</pre></div>');
+            }
+            $("button#freebase-loading-load").text("Close").unbind().click(function() {
+                self._dismiss();
+            });
+            $("button#freebase-loading-cancel").hide();
+        },
+        "json"
+    );
 }
 
 FreebaseLoadingDialog.prototype._dismiss = function() {

src/main/webapp/scripts/util/sign.js

@@ -57,26 +57,6 @@
         return window.open(url, windowname || "", params_list.join(","));
       },
                   
-      block : function() {
-        if ($.blockUI) {
-          $.blockUI({ css: { 
-            border: 'none', 
-            padding: '15px', 
-            backgroundColor: '#000', 
-            '-webkit-border-radius': '10px', 
-            '-moz-border-radius': '10px', 
-            opacity: .5, 
-            color: '#fff' 
-          } }); 
-        }
-      },
-      
-      unblock : function() {
-        if ($.unblockUI) {
-          $.unblockUI();
-        }
-      },
-      
       signintize : function(cont) {
         $('.signedin').show();
         $('.signedout').hide();
@@ -87,33 +67,31 @@
       },
       
       signin : function(success, provider, width, height) {
-        var newwin = window.Sign.popup("/command/authorize?" + $.param({ "provider" : provider}), width, height);
+        var newwin = window.Sign.popup("/command/authorize/" + provider, width, height);
-        
-        console.log(newwin);
         
+        if (newwin !== null) {
             newwin.opener = window;
+        }
         
         window.onauthorization = function() {
-          window.Sign.block();
           if (typeof success == 'undefined') {
             window.location.reload();
           } else {
             $.ajax({
-              url: "/command/check-authorization",
+              url: "/command/check-authorization/" + provider,
               dataType: "json",
               success: function(data) {
                 window.user = data;
                 window.Sign.signintize(success);
-                window.Sign.unblock();
               }
             });
           }
         };
         
-        if (window.focus) {
+        if (window.focus && newwin !== null) {
           newwin.focus();
-          console.log("focus");
         }
+        
         return false;
       },
       
@@ -124,17 +102,13 @@
       },
       
       signout : function(success,provider) {
-        window.Sign.block();
-        
         $.ajax({
-          url: "/command/deauthorize",
+          url: "/command/deauthorize/" + provider,
-          data: { "provider" : provider },
           success: function() {
             if (typeof success == 'undefined') {
               window.location.reload();
             } else {
               window.Sign.signoutize(success);
-              window.Sign.unblock();
             }
           }
         });

src/main/webapp/styles/dialogs/freebase-loading-dialog.css

@@ -1,8 +1,34 @@
 .freebase-loading-tripleloader-data {
-    height: 500px;
+    height: 400px;
+    width: 99%;
     overflow: auto;
     border: 1px solid #aaa;
     white-space: pre;
     padding: 0.3em 0.5em 0.5em 0.5em;
     font-family: monospace;
 }
+
+.freebase-loading-tripleloader-message {
+    height: 500px;
+    overflow: auto;
+    border: 1px solid #aaa;
+    padding: 0.3em 0.5em 0.5em 0.5em;
+}
+    
+.freebase-loading-authorization {
+    margin: 0em 2em;
+    padding: 0.6em 0.8em;
+    border: 1px solid #ccc;
+    background-color: #fff;
+    -moz-border-radius: 0.8em;
+    -webkit-border-radius: 0.8em;
+}
+    
+.freebase-loading-tripleloader-info {
+    margin-top: 1em;
+}
+
+.freebase-loading-tripleloader-info textarea {
+    width: 99%;
+    height: 5em;
+}

src/server/java/com/metaweb/gridworks/Gridworks.java

@@ -20,18 +20,15 @@ import javax.swing.JMenu;
 import javax.swing.JMenuBar;
 import javax.swing.JMenuItem;
 
-import org.apache.log4j.Appender;
-import org.apache.log4j.ConsoleAppender;
 import org.apache.log4j.Level;
-import org.apache.log4j.Logger;
 import org.mortbay.jetty.Connector;
 import org.mortbay.jetty.Server;
 import org.mortbay.jetty.bio.SocketConnector;
 import org.mortbay.jetty.webapp.WebAppContext;
-import org.mortbay.log.Log;
 import org.mortbay.util.Scanner;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
 
-import com.metaweb.util.logging.IndentingLayout;
 import com.metaweb.util.signal.AbstractSignalHandler;
 import com.metaweb.util.threads.ThreadPoolExecutorAdapter;
 
@@ -46,28 +43,7 @@ public class Gridworks {
     static private int port;
     static private String host;
 
-    private static Logger root = Logger.getRootLogger();
+    final static Logger logger = LoggerFactory.getLogger("gridworks");
-    private static Logger logger = Logger.getLogger("com.metaweb.gridworks");
-
-    public static void log(String message) {
-        logger.info(message);
-    }
-
-    public static void info(String message) {
-        logger.info(message);
-    }
-    
-    public static void error(String message, Throwable t) {
-        logger.error(message, t);
-    }
-
-    public static void warn(String message) {
-        logger.warn(message);
-    }
-
-    public static void warn(String message, Throwable t) {
-        logger.warn(message, t);
-    }
     
     public static String getVersion() {
         return VERSION;
@@ -100,20 +76,15 @@ public class Gridworks {
         System.setProperty("com.apple.eawt.CocoaComponent.CompatibilityMode", "false"); 
 
         // tell the signpost library to log
-        System.setProperty("debug","true");
+        //System.setProperty("debug","true");
             
         // if not already set, make sure jython can find its python stuff
         if (System.getProperty("python.path") == null) {
             System.setProperty("python.path","lib/python");
         }
         
-        // initialize the log4j system
+        // set the log verbosity level
-        Appender console = new ConsoleAppender(new IndentingLayout());
+        org.apache.log4j.Logger.getRootLogger().setLevel(Level.toLevel(Configurations.get("gridworks.verbosity","info")));
-        root.setLevel(Level.ALL);
-        root.addAppender(console);
-
-        Logger jetty_logger = Logger.getLogger("org.mortbay.log");
-        jetty_logger.setLevel(Level.WARN);
 
         tempDir = new File(Configurations.get("gridworks.temp","temp"));
         if (!tempDir.exists()) tempDir.mkdirs();
@@ -137,7 +108,7 @@ public class Gridworks {
                 GridworksClient client = new GridworksClient();
                 client.init(host,port);
             } catch (Exception e) {
-                Log.warn("Sorry, some error prevented us from launching the browser for you.\n\n Point your browser to http://" + host + ":" + port + "/ to start using Gridworks.");
+                logger.warn("Sorry, some error prevented us from launching the browser for you.\n\n Point your browser to http://" + host + ":" + port + "/ to start using Gridworks.");
             }
         }
         
@@ -152,6 +123,8 @@ public class Gridworks {
 
 class GridworksServer extends Server {
     
+    final static Logger logger = LoggerFactory.getLogger("gridworks_server");
+        
     private ThreadPoolExecutor threadPool;
     
     public void init(String host, int port) throws Exception {
@@ -177,11 +150,11 @@ class GridworksServer extends Server {
 
         File webXml = new File(contextRoot, "WEB-INF/web.xml");
         if (!webXml.isFile()) {
-            Gridworks.warn("Warning: Failed to find web application. Could not find 'web.xml' at '" + webXml.getAbsolutePath() + "'");
+            logger.warn("Warning: Failed to find web application. Could not find 'web.xml' at '" + webXml.getAbsolutePath() + "'");
             System.exit(-1);
         }
 
-        Gridworks.info("Initializing context: '" + contextPath + "' from '" + contextRoot.getAbsolutePath() + "'");
+        logger.info("Initializing context: '" + contextPath + "' from '" + contextRoot.getAbsolutePath() + "'");
         WebAppContext context = new WebAppContext(contextRoot.getAbsolutePath(), contextPath);
         //context.setCopyWebDir(false);
         //context.setDefaultsDescriptor(null);
@@ -217,7 +190,7 @@ class GridworksServer extends Server {
         scanList.add(new File(contextRoot, "WEB-INF/web.xml"));
         findFiles(".class", new File(contextRoot, "WEB-INF/classes"), scanList);
 
-        Gridworks.info("Starting autoreloading scanner... ");
+        logger.info("Starting autoreloading scanner... ");
 
         Scanner scanner = new Scanner();
         scanner.setScanInterval(Configurations.getInteger("gridworks.scanner.period",1));
@@ -228,10 +201,10 @@ class GridworksServer extends Server {
             @SuppressWarnings("unchecked")
             public void filesChanged(List changedFiles) {
                 try {
-                    Gridworks.info("Stopping context: " + contextRoot.getAbsolutePath());
+                    logger.info("Stopping context: " + contextRoot.getAbsolutePath());
                     context.stop();
 
-                    Gridworks.info("Starting context: " + contextRoot.getAbsolutePath());
+                    logger.info("Starting context: " + contextRoot.getAbsolutePath());
                     context.start();
                 } catch (Exception ex) {
                     throw new RuntimeException(ex);