fixes #3462 (#3921)
Co-authored-by: Antonin Delpeuch <antonin@delpeuch.eu>
This commit is contained in:
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7dd779e674
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fed23ec7f6
@ -224,7 +224,7 @@ abstract public class ImportingParserBase implements ImportingParser {
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return addColumn(project, fileNameColumnName, columnId);
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return addColumn(project, fileNameColumnName, columnId);
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}
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}
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private static int addArchiveColumn(Project project) {
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protected static int addArchiveColumn(Project project) {
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String columnName = "Archive"; // TODO: Localize?
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String columnName = "Archive"; // TODO: Localize?
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return addColumn(project, columnName, 0);
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return addColumn(project, columnName, 0);
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}
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}
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@ -39,6 +39,8 @@ import java.io.InputStream;
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import java.io.Reader;
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import java.io.Reader;
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import java.util.List;
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import java.util.List;
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import com.google.refine.model.Cell;
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import com.google.refine.model.Row;
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import org.apache.commons.lang.NotImplementedException;
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import org.apache.commons.lang.NotImplementedException;
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import com.fasterxml.jackson.databind.node.ObjectNode;
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import com.fasterxml.jackson.databind.node.ObjectNode;
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@ -111,11 +113,24 @@ abstract public class TreeImportingParserBase extends ImportingParserBase {
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) throws IOException {
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) throws IOException {
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final File file = ImportingUtilities.getFile(job, fileRecord);
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final File file = ImportingUtilities.getFile(job, fileRecord);
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final String fileSource = ImportingUtilities.getFileSource(fileRecord);
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final String fileSource = ImportingUtilities.getFileSource(fileRecord);
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final String archiveFileName = ImportingUtilities.getArchiveFileName(fileRecord);
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int filenameColumnIndex = -1;
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int archiveColumnIndex = -1;
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int startingRowCount = project.rows.size();
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progress.startFile(fileSource);
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progress.startFile(fileSource);
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try {
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try {
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InputStream inputStream = ImporterUtilities.openAndTrackFile(fileSource, file, progress);
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InputStream inputStream = ImporterUtilities.openAndTrackFile(fileSource, file, progress);
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try {
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try {
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if (JSONUtilities.getBoolean(options, "includeArchiveFileName", false)
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&& archiveFileName != null) {
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archiveColumnIndex = addArchiveColumn(project);
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}
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if (JSONUtilities.getBoolean(options, "includeFileSources", false)) {
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filenameColumnIndex = addFilenameColumn(project, archiveColumnIndex >=0);
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}
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if (useInputStream) {
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if (useInputStream) {
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parseOneFile(project, metadata, job, fileSource, inputStream,
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parseOneFile(project, metadata, job, fileSource, inputStream,
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rootColumnGroup, limit, options, exceptions);
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rootColumnGroup, limit, options, exceptions);
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@ -129,6 +144,18 @@ abstract public class TreeImportingParserBase extends ImportingParserBase {
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parseOneFile(project, metadata, job, fileSource, reader,
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parseOneFile(project, metadata, job, fileSource, reader,
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rootColumnGroup, limit, options, exceptions);
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rootColumnGroup, limit, options, exceptions);
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}
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}
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// Fill in filename and archive name column for all rows added from this file
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int endingRowCount = project.rows.size();
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for (int i = startingRowCount; i < endingRowCount; i++) {
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Row row = project.rows.get(i);
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if (archiveColumnIndex >= 0) {
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row.setCell(archiveColumnIndex, new Cell(archiveFileName, null));
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}
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if (filenameColumnIndex >= 0) {
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row.setCell(filenameColumnIndex, new Cell(fileSource, null));
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}
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}
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} finally {
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} finally {
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inputStream.close();
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inputStream.close();
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}
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}
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13
main/tests/data/json-sample-format-1.json
Normal file
13
main/tests/data/json-sample-format-1.json
Normal file
@ -0,0 +1,13 @@
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{
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"library": [
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{
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"book1": {
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"author": {
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"author-name": "author1",
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"author-dob": "date"
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},
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"genre": "genre1"
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}
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}
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]
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}
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@ -33,15 +33,13 @@ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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package com.google.refine.importers;
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package com.google.refine.importers;
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import java.io.ByteArrayInputStream;
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import java.io.*;
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import java.io.IOException;
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import java.io.InputStream;
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import java.io.UnsupportedEncodingException;
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import java.util.ArrayList;
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import java.util.ArrayList;
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import java.lang.reflect.Method;
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import java.lang.reflect.Method;
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import java.util.LinkedList;
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import java.util.LinkedList;
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import java.util.List;
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import java.util.List;
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import org.apache.commons.io.FileUtils;
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import org.slf4j.LoggerFactory;
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import org.slf4j.LoggerFactory;
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import org.testng.Assert;
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import org.testng.Assert;
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import org.testng.ITestResult;
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import org.testng.ITestResult;
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@ -472,6 +470,41 @@ public class JsonImporterTests extends ImporterTest {
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assertProjectCreated(project, 63, 63, 8);
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assertProjectCreated(project, 63, 63, 8);
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}
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}
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@Test
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public void testAddFileColumn() throws Exception {
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final String FILE = "json-sample-format-1.json";
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String filename = ClassLoader.getSystemResource(FILE).getPath();
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// File is assumed to be in job.getRawDataDir(), so copy it there
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FileUtils.copyFile(new File(filename), new File(job.getRawDataDir(), FILE));
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List<ObjectNode> fileRecords = new ArrayList<>();
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fileRecords.add(ParsingUtilities.evaluateJsonStringToObjectNode(String.format("{\"location\": \"%s\",\"fileName\": \"%s\"}", FILE, "json-sample-format-1.json")));
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ObjectNode options = SUT.createParserUIInitializationData(
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job, new LinkedList<>(), "text/json");
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ArrayNode path = ParsingUtilities.mapper.createArrayNode();
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JSONUtilities.append(path, JsonImporter.ANONYMOUS);
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JSONUtilities.safePut(options, "recordPath", path);
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JSONUtilities.safePut(options, "trimStrings", false);
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JSONUtilities.safePut(options, "storeEmptyStrings", true);
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JSONUtilities.safePut(options, "guessCellValueTypes", false);
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JSONUtilities.safePut(options,"includeFileSources",true);
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List<Exception> exceptions = new ArrayList<Exception>();
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SUT.parse(
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project,
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metadata,
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job,
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fileRecords,
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"text/json",
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-1,
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options,
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exceptions
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);
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Assert.assertNotNull(project.columnModel.getColumnByName("File"));
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Assert.assertEquals(project.rows.get(0).getCell(0).value,"json-sample-format-1.json");
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}
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//------------helper methods---------------
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//------------helper methods---------------
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private static String getTypicalElement(int id) {
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private static String getTypicalElement(int id) {
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@ -33,12 +33,14 @@ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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package com.google.refine.importers;
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package com.google.refine.importers;
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import java.io.ByteArrayInputStream;
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import java.io.*;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.io.InputStream;
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import java.io.UnsupportedEncodingException;
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import java.util.Collections;
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import java.util.Collections;
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import java.util.LinkedList;
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import java.util.List;
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import com.google.refine.importers.tree.ImportColumnGroup;
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import org.apache.commons.io.FileUtils;
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import org.slf4j.LoggerFactory;
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import org.slf4j.LoggerFactory;
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import org.testng.Assert;
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import org.testng.Assert;
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import org.testng.annotations.AfterMethod;
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import org.testng.annotations.AfterMethod;
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@ -199,6 +201,41 @@ public class XmlImporterTests extends ImporterTest {
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Assert.assertEquals(cg0.columnSpan,2);
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Assert.assertEquals(cg0.columnSpan,2);
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}
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}
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@Test
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public void testAddFileColumn() throws Exception {
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final String FILE = "xml-sample-format-1.xml";
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String filename = ClassLoader.getSystemResource(FILE).getPath();
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// File is assumed to be in job.getRawDataDir(), so copy it there
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FileUtils.copyFile(new File(filename), new File(job.getRawDataDir(), FILE));
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List<ObjectNode> fileRecords = new ArrayList<>();
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fileRecords.add(ParsingUtilities.evaluateJsonStringToObjectNode(String.format("{\"location\": \"%s\",\"fileName\": \"%s\"}", FILE, "xml-sample-format-1.xml")));
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ObjectNode options = SUT.createParserUIInitializationData(
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job, new LinkedList<>(), "text/json");
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ArrayNode path = ParsingUtilities.mapper.createArrayNode();
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JSONUtilities.append(path, "library");
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JSONUtilities.safePut(options, "recordPath", path);
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JSONUtilities.safePut(options, "trimStrings", false);
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JSONUtilities.safePut(options, "storeEmptyStrings", true);
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JSONUtilities.safePut(options, "guessCellValueTypes", false);
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JSONUtilities.safePut(options,"includeFileSources",true);
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List<Exception> exceptions = new ArrayList<Exception>();
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SUT.parse(
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project,
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metadata,
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job,
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fileRecords,
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"text/json",
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-1,
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options,
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exceptions
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);
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Assert.assertNotNull(project.columnModel.getColumnByName("File"));
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Assert.assertEquals(project.rows.get(0).getCell(0).value,"xml-sample-format-1.xml");
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}
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//------------helper methods---------------
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//------------helper methods---------------
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public static String getTypicalElement(int id){
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public static String getTypicalElement(int id){
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