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90 Commits

Author SHA1 Message Date
dependabot[bot]
f80d8978dd
build(deps): bump jackson.version from 2.12.2 to 2.12.3 (#3812) 
Bumps `jackson.version` from 2.12.2 to 2.12.3.

Updates `jackson-databind` from 2.12.2 to 2.12.3
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.12.2 to 2.12.3
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.12.2 to 2.12.3
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.12.2...jackson-core-2.12.3)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-04-16 16:34:53 +02:00
dependabot[bot]
559f91b42a
build(deps): bump javax.servlet-api from 3.1.0 to 4.0.1 (#3752) 
Bumps [javax.servlet-api](https://github.com/javaee/servlet-spec) from 3.1.0 to 4.0.1.
- [Release notes](https://github.com/javaee/servlet-spec/releases)
- [Commits](https://github.com/javaee/servlet-spec/compare/3.1.0...4.0.1)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-04-04 14:10:27 -04:00
dependabot[bot]
5441b43870
build(deps): bump jackson.version from 2.12.1 to 2.12.2 (#3693) 
Bumps `jackson.version` from 2.12.1 to 2.12.2.

Updates `jackson-databind` from 2.12.1 to 2.12.2
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.12.1 to 2.12.2
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.12.1 to 2.12.2
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.12.1...jackson-core-2.12.2)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-04-03 21:56:21 -04:00
dependabot[bot]
0f024d833e
build(deps): bump butterfly from 1.0.4 to 1.1.1 (#3699) 
* build(deps): bump butterfly from 1.0.4 to 1.1.0

Bumps [butterfly](https://github.com/OpenRefine/simile-butterfly) from 1.0.4 to 1.1.0.
- [Release notes](https://github.com/OpenRefine/simile-butterfly/releases)
- [Commits](https://github.com/OpenRefine/simile-butterfly/commits)

Signed-off-by: dependabot[bot] <support@github.com>

* Update Butterfly configuration after Jetty upgrade

* Fix main class name in web.xml

* Upgrade Butterfly to Jetty 9

* Temporary debugging output to understand why RefineServlet is not found

* Upgrade servlet-api

* Fix javax.servlet-api artifactId

* Reinstate debug logging temporarily

* Update butterfly to 1.1.1 to solve servlet-api version conflict

* Update javax.servlet-api in the rest of the code base

* Silence server logs in ./refine ui_test again

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Antonin Delpeuch <antonin@delpeuch.eu>
 2021-03-18 10:12:57 +01:00
dependabot[bot]
99ea1f7a77
Bump jackson.version from 2.11.3 to 2.12.1 (#3530) 
* Bump jackson.version from 2.11.3 to 2.12.1

Bumps `jackson.version` from 2.11.3 to 2.12.1.

Updates `jackson-databind` from 2.11.3 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.11.3 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.11.3 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.11.3...jackson-core-2.12.1)

Signed-off-by: dependabot[bot] <support@github.com>

* Pin jackson-core version to same as OpenRefine main

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Tom Morris <tfmorris@gmail.com>
Co-authored-by: Antonin Delpeuch <antonin@delpeuch.eu>
 2021-03-03 12:17:18 +01:00
Antonin Delpeuch
ffdede2423 Revert "Bump jackson.version from 2.11.3 to 2.12.1 (#3464)" 
There are unexpected test failures in the Wikidata extension.
This reverts commit 6879401f23.
 2021-01-27 09:32:23 +01:00
dependabot[bot]
6879401f23
Bump jackson.version from 2.11.3 to 2.12.1 (#3464) 
Bumps `jackson.version` from 2.11.3 to 2.12.1.

Updates `jackson-databind` from 2.11.3 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.11.3 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.11.3 to 2.12.1
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.11.3...jackson-core-2.12.1)

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
 2021-01-27 09:18:28 +01:00
dependabot-preview[bot]
8a5c6478f1
Bump jackson.version from 2.11.2 to 2.11.3 (#3246) 
Bumps `jackson.version` from 2.11.2 to 2.11.3.

Updates `jackson-databind` from 2.11.2 to 2.11.3
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.11.2 to 2.11.3
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.11.2 to 2.11.3
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.11.2...jackson-core-2.11.3)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-10-02 09:08:54 +02:00
dependabot-preview[bot]
d209578a71
Bump jacoco-maven-plugin from 0.8.5 to 0.8.6 (#3189) 
Bumps [jacoco-maven-plugin](https://github.com/jacoco/jacoco) from 0.8.5 to 0.8.6.
- [Release notes](https://github.com/jacoco/jacoco/releases)
- [Commits](https://github.com/jacoco/jacoco/compare/v0.8.5...v0.8.6)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-09-16 15:24:31 +02:00
dependabot-preview[bot]
937bb94a0e
Bump maven-resources-plugin from 3.1.0 to 3.2.0 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-3.1.0...maven-resources-plugin-3.2.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-08-12 08:15:08 +00:00
dependabot-preview[bot]
2dfea4b601
Bump jackson.version from 2.11.1 to 2.11.2 (#3021) 
Bumps `jackson.version` from 2.11.1 to 2.11.2.

Updates `jackson-databind` from 2.11.1 to 2.11.2
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.11.1 to 2.11.2
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.11.1 to 2.11.2
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.11.1...jackson-core-2.11.2)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-08-03 14:37:28 +02:00
Tom Morris
df8d092132
Micro benchmark harness & ToNumber optimizations (#2859) 
* Performance optimized version of ToNumber

Approximately 5x faster for floats (data dependent)
and about the same speed for integers.

- Instead of blindly trying to parse as Long, do a quick check
  for obvious problems (e.g. decimal point).
- Don't trim. It's already done by called methods.
- Use valueOf() instead of parse() to avoid object creation

* Add Java Microbenchmark Harness

The shaded JAR is missing the OpenRefine classes, for a reason
that I haven't figured out, so requires openrefine-main.jar at runtime.

* Remove old implementations of ToNumber

* Remove unneeded dependencies from main project

* Clean up and reformat
 2020-07-03 21:42:44 +02:00
dependabot-preview[bot]
c09e1d5baa
Bump jackson.version from 2.11.0 to 2.11.1 (#2811) 
Bumps `jackson.version` from 2.11.0 to 2.11.1.

Updates `jackson-databind` from 2.11.0 to 2.11.1
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.11.0 to 2.11.1
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.11.0 to 2.11.1
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.11.0...jackson-core-2.11.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-06-25 10:39:29 +02:00
Tom Morris
f9eb819b01
Merge pull request #2737 from OpenRefine/dependabot/maven/org.slf4j-slf4j-log4j12-1.7.30 
Bump slf4j-log4j12 from 1.7.18 to 1.7.30
 2020-06-24 16:00:22 -04:00
dependabot-preview[bot]
408b782117
Bump build-helper-maven-plugin from 3.1.0 to 3.2.0 
Bumps [build-helper-maven-plugin](https://github.com/mojohaus/build-helper-maven-plugin) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/mojohaus/build-helper-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/build-helper-maven-plugin/compare/build-helper-maven-plugin-3.1.0...build-helper-maven-plugin-3.2.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-23 08:45:07 +00:00
Tom Morris
6e66cb5144
Merge pull request #2734 from OpenRefine/dependabot/maven/org.codehaus.mojo-exec-maven-plugin-3.0.0 
Bump exec-maven-plugin from 1.3 to 3.0.0
 2020-06-22 13:08:11 -04:00
Tom Morris
0bfa3dd68a
Merge pull request #2745 from OpenRefine/dependabot/maven/org.codehaus.mojo-build-helper-maven-plugin-3.1.0 
Bump build-helper-maven-plugin from 1.8 to 3.1.0
 2020-06-22 13:06:02 -04:00
Tom Morris
bf57667a47
Merge pull request #2789 from OpenRefine/dependabot/maven/org.apache.maven.plugins-maven-resources-plugin-3.1.0 
Bump maven-resources-plugin from 2.6 to 3.1.0
 2020-06-22 12:48:59 -04:00
dependabot-preview[bot]
a8ae5d37ed
Bump maven-resources-plugin from 2.6 to 3.1.0 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 2.6 to 3.1.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-2.6...maven-resources-plugin-3.1.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-22 08:45:55 +00:00
Antonin Delpeuch
3c355b2a5f Fix evaluation stage for surefireArgs 2020-06-22 06:28:13 +02:00
Tom Morris
85d4de8e2c Fix reference to undefined surfireArgs param 
Restore parameter with an empty value
 2020-06-22 00:21:07 -04:00
Antonin Delpeuch
4966e448d0
Include coverage statistics for the main module too (#2761) 
* Include coverage statistics for the main module too

* Fix execution data path for main module
 2020-06-19 22:45:49 +02:00
Antonin Delpeuch
9c7d4c2774 Fix coverage parameter injection phase 2020-06-19 21:27:59 +02:00
Antonin Delpeuch
ed78127142
Fix coverage computation (#2759) 
* Fix coverage computation, closes #2266

* Add gdata to list of source directories for coverage
 2020-06-19 21:22:19 +02:00
Lu Liu
335e81a26c OAuth support for the Wikidata extension (#2661) 
Closes #1612 

Merges @afkbrb work to finish @wetneb protype, including:
* adding support for OAuth in addition to basic auth
* supporting registration of single user Wikidata OAuth consumers.
* adding extensive tests
* cleaning up the login dialog

This depends on the next release of the Wikidata Toolkit, but we're currently publishing our own snapshot that includes the necessary changes (thanks @wetneb!)

Co-authored-by: Antonin Delpeuch <antonin@delpeuch.eu>
 2020-06-18 23:51:22 -04:00
dependabot-preview[bot]
b53d738df8
Bump build-helper-maven-plugin from 1.8 to 3.1.0 
Bumps [build-helper-maven-plugin](https://github.com/mojohaus/build-helper-maven-plugin) from 1.8 to 3.1.0.
- [Release notes](https://github.com/mojohaus/build-helper-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/build-helper-maven-plugin/compare/build-helper-maven-plugin-1.8...build-helper-maven-plugin-3.1.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-17 08:26:08 +00:00
Tom Morris
761858cfe3 Use property for all SLF4J versions 2020-06-16 17:07:21 -04:00
dependabot-preview[bot]
64990fd74c
Bump exec-maven-plugin from 1.3 to 3.0.0 
Bumps [exec-maven-plugin](https://github.com/mojohaus/exec-maven-plugin) from 1.3 to 3.0.0.
- [Release notes](https://github.com/mojohaus/exec-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/exec-maven-plugin/compare/exec-maven-plugin-1.3...exec-maven-plugin-3.0.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-16 08:18:18 +00:00
Tom Morris
983c8bd422
Merge pull request #2704 from OpenRefine/dependabot/maven/javax.xml.bind-jaxb-api-2.3.1 
Bump jaxb-api from 2.2.3 to 2.3.1
 2020-06-15 23:44:16 -04:00
dependabot-preview[bot]
4e9d365fcd
Bump maven-compiler-plugin from 3.1 to 3.8.1 (#2728) 
Bumps [maven-compiler-plugin](https://github.com/apache/maven-compiler-plugin) from 3.1 to 3.8.1.
- [Release notes](https://github.com/apache/maven-compiler-plugin/releases)
- [Commits](https://github.com/apache/maven-compiler-plugin/compare/maven-compiler-plugin-3.1...maven-compiler-plugin-3.8.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-06-15 11:20:38 +02:00
dependabot-preview[bot]
5fdbd382dc
Bump jaxb-api from 2.2.3 to 2.3.1 
Bumps [jaxb-api](https://github.com/javaee/jaxb-spec) from 2.2.3 to 2.3.1.
- [Release notes](https://github.com/javaee/jaxb-spec/releases)
- [Commits](https://github.com/javaee/jaxb-spec/commits/2.3.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-12 08:18:43 +00:00
Tom Morris
e6ed8e5d62
Save preferences JSON using UTF-8 encoding. Bulletproof prefs load. (#2657) 
* Save preferences JSON using UTF-8 encoding. Bulletproof prefs load.

Fixes #2543. Fixes #2627.

Always use UTF-8 to write JSON because platform default encoding
might not be legal JSON (e.g. ISO 8859-1).

Also be more conservative about keeping backups if we fail to write.

* Handle case where backup prefs is better than more recent

* Recover from corrupted prefs with null starred list.

Fixes #2544. Replaces null with an empty list.

* Run tests with non-UTF-8 encoding

Make sure that we don't depend on UTF-8 being the default encoding
because it isn't true everywhere (e.g. Windows)

* Add test for non-ASCII chars in workspace.json

This depends on the default Java encoding being something
other than UTF-8 to test properly.
 2020-06-06 10:00:01 +01:00
dependabot-preview[bot]
c414dfbb5c
Bump jacoco-maven-plugin from 0.8.2 to 0.8.5 (#2653) 
Bumps [jacoco-maven-plugin](https://github.com/jacoco/jacoco) from 0.8.2 to 0.8.5.
- [Release notes](https://github.com/jacoco/jacoco/releases)
- [Commits](https://github.com/jacoco/jacoco/compare/v0.8.2...v0.8.5)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-05-30 11:09:13 +01:00
dependabot-preview[bot]
7058f39aee
Bump maven-dependency-plugin from 3.1.1 to 3.1.2 (#2651) 
Bumps [maven-dependency-plugin](https://github.com/apache/maven-dependency-plugin) from 3.1.1 to 3.1.2.
- [Release notes](https://github.com/apache/maven-dependency-plugin/releases)
- [Commits](https://github.com/apache/maven-dependency-plugin/compare/maven-dependency-plugin-3.1.1...maven-dependency-plugin-3.1.2)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-05-30 10:49:21 +01:00
dependabot-preview[bot]
19076b31a1
[Security] Bump jackson.version from 2.9.10 to 2.11.0 
Bumps `jackson.version` from 2.9.10 to 2.11.0.

Updates `jackson-databind` from 2.9.10 to 2.11.0
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-annotations` from 2.9.10 to 2.11.0
- [Release notes](https://github.com/FasterXML/jackson/releases)
- [Commits](https://github.com/FasterXML/jackson/commits)

Updates `jackson-core` from 2.9.10 to 2.11.0
- [Release notes](https://github.com/FasterXML/jackson-core/releases)
- [Commits](https://github.com/FasterXML/jackson-core/compare/jackson-core-2.9.10...jackson-core-2.11.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-05-28 08:35:22 +00:00
Antonin Delpeuch
d7d567439e Set version to 3.5-SNAPSHOT 2020-05-13 22:56:33 +02:00
Antonin Delpeuch
5597e1c942 Set version to 3.4-beta 2020-05-13 22:52:25 +02:00
Thad Guidry
baf3caa4f0 Revert "Adds Maven release for compile target" 
This reverts commit fa540b03f7.
 2020-04-17 10:45:28 -05:00
Thad Guidry
d6cce143fa Revert "fix wrong Java release" 
This reverts commit 3c539ed7b7.
 2020-04-17 10:45:24 -05:00
Thad Guidry
3c539ed7b7 fix wrong Java release 2020-04-17 10:20:26 -05:00
Thad Guidry
fa540b03f7 Adds Maven release for compile target 
Details:  https://maven.apache.org/plugins/maven-compiler-plugin/compile-mojo.html#release
 2020-04-17 10:14:22 -05:00
Thad Guidry
4e75942a72
Add our Org attributes to parent POM (#2546) 
* Add our Org attributes to parent POM

and full details on scm

* forgot to add the license distribution method

* change Org to CS&S

* escape the ampersand &
 2020-04-16 09:59:44 +02:00
Thad Guidry
1f98bfdbc3
Fix org.eclipse.m2e lifecycle-mapping not found (#2472) 
* Fix org.eclipse.m2e lifecycle-mapping not found

* remove unnecessary comment now since using profiles

* fix comment wrapping

* remove Eclipse specific profile
 2020-03-24 21:41:14 +01:00
Antonin Delpeuch
429f26c2ae Set version to 3.4-SNAPSHOT 2020-01-31 19:06:56 +01:00
Antonin Delpeuch
58b839b9c5 Set version to 3.3 2020-01-31 18:22:18 +01:00
Antonin Delpeuch
faece760f6 Set version to 3.3-SNAPSHOT 2020-01-08 20:56:51 +01:00
Antonin Delpeuch
e62bb7ac0e Set version to 3.3-rc1 2020-01-06 13:30:39 +01:00
Antonin Delpeuch
539a04e496 Fix Coveralls Maven plugin, closes #2266 2019-12-27 17:27:59 +01:00
Antonin Delpeuch
334147d611 Update Jackson to 2.9.10 2019-10-10 16:55:56 +01:00
Antonin Delpeuch
6c128d6692 Attempt to fix surefire on Appveyor 2019-08-28 10:08:22 +01:00