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129 Commits

Author SHA1 Message Date
Tom Morris
db42bcab92
Update to vicino 1.2 and drop transitive dependencies - fixes #2959 (#2998) 
Bump to vicino 1.2 with bug fix and real POM.

Drop dependencies on secondstring and arithcode which are just
transitive dependencies from simile-vicino, now that it has a
proper POM. Fixes #2959.
 2020-07-28 08:19:58 +02:00
dependabot-preview[bot]
d258e9bd05
Bump commons-text from 1.8 to 1.9 
Bumps commons-text from 1.8 to 1.9.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-07-27 08:30:43 +00:00
Tom Morris
7512f3cb52 Update to Butterfly 1.0.4 - fixes #2917 
Fixes #2917
Update to Butterfly 1.0.4 which catches NoClassDefFound errors
for Butterfly modules (ie OpenRefine extensions) which are missing
Java dependencies (e.g. those built against earlier versions
of OpenRefine)
 2020-07-23 12:21:24 -04:00
Tom Morris
d5abaac6df
Update marc4j to 2.9.1 - Fixes #2962 (#2977) 
* Add a MARC import test

* Make sure data directory is directory, not a file

* Update to marc4j 2.9.1 - fixes #2962
 2020-07-22 22:12:30 +02:00
Tom Morris
8cfdd5747a
Merge pull request #2952 from OpenRefine/dependabot/maven/org.mockito-mockito-core-3.4.2 
Bump mockito-core from 3.3.3 to 3.4.2
 2020-07-17 13:07:42 -04:00
Tom Morris
5336eca63e Remove redundant mockito dependencies 2020-07-17 12:48:06 -04:00
dependabot-preview[bot]
edf8595977
Bump mockito-core from 3.3.3 to 3.4.2 
Bumps [mockito-core](https://github.com/mockito/mockito) from 3.3.3 to 3.4.2.
- [Release notes](https://github.com/mockito/mockito/releases)
- [Commits](https://github.com/mockito/mockito/compare/v3.3.3...v3.4.2)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-07-17 08:17:43 +00:00
dependabot-preview[bot]
0f391b5343
Bump commons-lang3 from 3.10 to 3.11 
Bumps commons-lang3 from 3.10 to 3.11.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-07-17 08:17:12 +00:00
Antonin Delpeuch
858bd463a4 Revert "Bump git-commit-id-plugin from 4.0.0 to 4.0.1 (#2948)" 
The dependency update broke the snapshot release process on GitHub Actions:
https://github.com/OpenRefine/OpenRefine/runs/876878262

This reverts commit 52bb2c4d38.
 2020-07-16 11:07:54 +02:00
dependabot-preview[bot]
52bb2c4d38
Bump git-commit-id-plugin from 4.0.0 to 4.0.1 (#2948) 
Bumps git-commit-id-plugin from 4.0.0 to 4.0.1.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-07-16 11:01:43 +02:00
dependabot-preview[bot]
396efc0d1b
Bump mockwebserver from 4.7.2 to 4.8.0 
Bumps [mockwebserver](https://github.com/square/okhttp) from 4.7.2 to 4.8.0.
- [Release notes](https://github.com/square/okhttp/releases)
- [Changelog](https://github.com/square/okhttp/blob/master/CHANGELOG.md)
- [Commits](https://github.com/square/okhttp/compare/parent-4.7.2...parent-4.8.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-07-13 08:39:23 +00:00
dependabot-preview[bot]
380942d53f
Bump httpmime from 4.5.2 to 4.5.12 (#2904) 
Bumps httpmime from 4.5.2 to 4.5.12.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-07-08 10:29:09 +02:00
Urvashi Gupta
f62f63706c
Report HTTP error codes to the user when creating a project from a URL (#2870) 
* HTTP Error

* urlImportingTestCompleted
 2020-07-07 11:58:47 +02:00
Tom Morris
df8d092132
Micro benchmark harness & ToNumber optimizations (#2859) 
* Performance optimized version of ToNumber

Approximately 5x faster for floats (data dependent)
and about the same speed for integers.

- Instead of blindly trying to parse as Long, do a quick check
  for obvious problems (e.g. decimal point).
- Don't trim. It's already done by called methods.
- Use valueOf() instead of parse() to avoid object creation

* Add Java Microbenchmark Harness

The shaded JAR is missing the OpenRefine classes, for a reason
that I haven't figured out, so requires openrefine-main.jar at runtime.

* Remove old implementations of ToNumber

* Remove unneeded dependencies from main project

* Clean up and reformat
 2020-07-03 21:42:44 +02:00
Tom Morris
83f52d4ba5
Fall back to Apache Jena 3.9.0 (from 3.15.0) (#2826) 
Fixes #2824
Versions up through 3.14.0 appear to work, but since odfdom bundles
Jena 3.9.0, we're going to be conservative and match that.

As an added bonus, includes a blank node test which will trigger
the failure.
 2020-06-27 23:40:21 +02:00
Tom Morris
cfa1038066
Remove commons-digester dependency (#2798) 2020-06-25 14:16:25 +02:00
Tom Morris
f9eb819b01
Merge pull request #2737 from OpenRefine/dependabot/maven/org.slf4j-slf4j-log4j12-1.7.30 
Bump slf4j-log4j12 from 1.7.18 to 1.7.30
 2020-06-24 16:00:22 -04:00
dependabot-preview[bot]
408b782117
Bump build-helper-maven-plugin from 3.1.0 to 3.2.0 
Bumps [build-helper-maven-plugin](https://github.com/mojohaus/build-helper-maven-plugin) from 3.1.0 to 3.2.0.
- [Release notes](https://github.com/mojohaus/build-helper-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/build-helper-maven-plugin/compare/build-helper-maven-plugin-3.1.0...build-helper-maven-plugin-3.2.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-23 08:45:07 +00:00
Tom Morris
0bfa3dd68a
Merge pull request #2745 from OpenRefine/dependabot/maven/org.codehaus.mojo-build-helper-maven-plugin-3.1.0 
Bump build-helper-maven-plugin from 1.8 to 3.1.0
 2020-06-22 13:06:02 -04:00
dependabot-preview[bot]
a8ae5d37ed
Bump maven-resources-plugin from 2.6 to 3.1.0 
Bumps [maven-resources-plugin](https://github.com/apache/maven-resources-plugin) from 2.6 to 3.1.0.
- [Release notes](https://github.com/apache/maven-resources-plugin/releases)
- [Commits](https://github.com/apache/maven-resources-plugin/compare/maven-resources-plugin-2.6...maven-resources-plugin-3.1.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-22 08:45:55 +00:00
Tom Morris
e293602897
Restore character encoding guesser (#2755) 
* Fixes #486. Builds on code from Steffen Stundzig

- Switch from ICU4J to juniversalchardet
  (Java port of Mozilla charset detector)
- Replace org.json code with Jackson
- Add tests
- Add TODO for multi-file character encoding mismatches

* Restore dependency lost in rebase

Co-authored-by: Steffen Stundzig <git@stundzig.de>
 2020-06-22 06:04:51 +02:00
Antonin Delpeuch
e92200a35f Move jaxb-api dependency out of the test section 2020-06-21 20:56:33 +02:00
Antonin Delpeuch
62cb20a201 Restrict copied jars to runtime dependencies. Fixes #2777 2020-06-21 15:36:17 +02:00
dependabot-preview[bot]
479bc63eaf
Bump httpcore from 4.4.9 to 4.4.13 
Bumps httpcore from 4.4.9 to 4.4.13.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-19 08:20:00 +00:00
dependabot-preview[bot]
b53d738df8
Bump build-helper-maven-plugin from 1.8 to 3.1.0 
Bumps [build-helper-maven-plugin](https://github.com/mojohaus/build-helper-maven-plugin) from 1.8 to 3.1.0.
- [Release notes](https://github.com/mojohaus/build-helper-maven-plugin/releases)
- [Commits](https://github.com/mojohaus/build-helper-maven-plugin/compare/build-helper-maven-plugin-1.8...build-helper-maven-plugin-3.1.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-17 08:26:08 +00:00
Tom Morris
5d2c10b9d8
Merge pull request #2731 from tfmorris/jena-3.7.0 
Bump Jena from 3.6.0 to 3.15.0
 2020-06-16 17:08:01 -04:00
Tom Morris
761858cfe3 Use property for all SLF4J versions 2020-06-16 17:07:21 -04:00
Tom Morris
a4e9e130ef Use property for Jena version 2020-06-16 16:58:26 -04:00
dependabot-preview[bot]
5ecb260fe4
Bump joda-time from 2.9.9 to 2.10.6 (#2738) 
Bumps [joda-time](https://github.com/JodaOrg/joda-time) from 2.9.9 to 2.10.6.
- [Release notes](https://github.com/JodaOrg/joda-time/releases)
- [Changelog](https://github.com/JodaOrg/joda-time/blob/master/RELEASE-NOTES.txt)
- [Commits](https://github.com/JodaOrg/joda-time/compare/v2.9.9...v2.10.6)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-06-16 11:45:27 +02:00
dependabot-preview[bot]
6f4b615f84
Bump slf4j-log4j12 from 1.7.18 to 1.7.30 
Bumps [slf4j-log4j12](https://github.com/qos-ch/slf4j) from 1.7.18 to 1.7.30.
- [Release notes](https://github.com/qos-ch/slf4j/releases)
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.18...v_1.7.30)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-16 08:19:06 +00:00
Tom Morris
749704518c
Use Apache HTTP Commons for Fetch URL (#2692) 
* Use mockwebserver instead of live network for tests

Fixes #2680. Fixes #1904.

* Remove use of deprecated methods

* Convert to use Apache HTTP Components client library

Fixes #1410 by virtue of redirect following being a built-in
capability of the library, along with retries with binary backoff,
built-in decompression, etc.

* Address review comments
 2020-06-16 09:38:06 +02:00
Tom Morris
983c8bd422
Merge pull request #2704 from OpenRefine/dependabot/maven/javax.xml.bind-jaxb-api-2.3.1 
Bump jaxb-api from 2.2.3 to 2.3.1
 2020-06-15 23:44:16 -04:00
Tom Morris
480bf4fb85 Update Jena to 3.15.0 
Also add explicit dependency on Apache commons-io
which should be a transitive dependency, but doesn't
work for Jena 3.8+

Tried switching to standard packaging of
apache-jena-libs, but that doesn't know how
to find the JSONLD parser.
 2020-06-15 20:01:45 -04:00
dependabot[bot]
2397647dca
Bump guava from 23.6.1-jre to 24.1.1-jre in /main 
Bumps [guava](https://github.com/google/guava) from 23.6.1-jre to 24.1.1-jre.
- [Release notes](https://github.com/google/guava/releases)
- [Commits](https://github.com/google/guava/commits)

Signed-off-by: dependabot[bot] <support@github.com>
 2020-06-15 21:19:11 +00:00
dependabot-preview[bot]
7fcea61132
Bump swc-parser-lazy from 3.1.7 to 3.1.9 (#2698) 
Bumps swc-parser-lazy from 3.1.7 to 3.1.9.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-06-15 20:05:54 +02:00
dependabot-preview[bot]
4e9d365fcd
Bump maven-compiler-plugin from 3.1 to 3.8.1 (#2728) 
Bumps [maven-compiler-plugin](https://github.com/apache/maven-compiler-plugin) from 3.1 to 3.8.1.
- [Release notes](https://github.com/apache/maven-compiler-plugin/releases)
- [Commits](https://github.com/apache/maven-compiler-plugin/compare/maven-compiler-plugin-3.1...maven-compiler-plugin-3.8.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-06-15 11:20:38 +02:00
dependabot-preview[bot]
686315b0c3
Bump signpost-commonshttp4 from 1.2.1.2 to 2.0.0 (#2695) 
Bumps [signpost-commonshttp4](https://github.com/mttkay/signpost) from 1.2.1.2 to 2.0.0.
- [Release notes](https://github.com/mttkay/signpost/releases)
- [Changelog](https://github.com/mttkay/signpost/blob/master/CHANGELOG.md)
- [Commits](https://github.com/mttkay/signpost/compare/1.2.1.2...oauth-signpost-2.0.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>

Co-authored-by: dependabot-preview[bot] <27856297+dependabot-preview[bot]@users.noreply.github.com>
 2020-06-14 09:58:33 +02:00
dependabot-preview[bot]
f0ebb3fcd6
Bump commons-validator from 1.5.1 to 1.6 
Bumps commons-validator from 1.5.1 to 1.6.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-12 08:19:45 +00:00
dependabot-preview[bot]
5fdbd382dc
Bump jaxb-api from 2.2.3 to 2.3.1 
Bumps [jaxb-api](https://github.com/javaee/jaxb-spec) from 2.2.3 to 2.3.1.
- [Release notes](https://github.com/javaee/jaxb-spec/releases)
- [Commits](https://github.com/javaee/jaxb-spec/commits/2.3.1)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-12 08:18:43 +00:00
Tom Morris
a7e84e8a56
Merge pull request #2697 from OpenRefine/dependabot/maven/powermock.version-2.0.7 
Bump powermock.version from 2.0.2 to 2.0.7
 2020-06-11 21:44:15 -04:00
dependabot-preview[bot]
c8f8290aa1
Bump slf4j-api from 1.7.18 to 1.7.30 
Bumps [slf4j-api](https://github.com/qos-ch/slf4j) from 1.7.18 to 1.7.30.
- [Release notes](https://github.com/qos-ch/slf4j/releases)
- [Commits](https://github.com/qos-ch/slf4j/compare/v_1.7.18...v_1.7.30)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-12 01:33:00 +00:00
Tom Morris
24754cbb9b
Merge pull request #2677 from OpenRefine/dependabot/maven/pl.project13.maven-git-commit-id-plugin-4.0.0 
Bump git-commit-id-plugin from 2.2.4 to 4.0.0
 2020-06-11 21:31:10 -04:00
Tom Morris
4b874f129a
Merge pull request #2696 from OpenRefine/dependabot/maven/org.apache.httpcomponents-httpclient-4.5.12 
Bump httpclient from 4.5.5 to 4.5.12
 2020-06-11 14:01:25 -04:00
Tom Morris
25caaec9a2
Merge pull request #2699 from OpenRefine/dependabot/maven/org.openrefine.dependencies-butterfly-1.0.3 
Bump butterfly from 1.0.2 to 1.0.3
 2020-06-11 13:58:40 -04:00
Tom Morris
18c18e587e
Replace Apache Ant with Commons Compress (#2691) 
NOTE: Changes the public API where some of the old types were
embedded which means that any extensions that extend these
interfaces will have to be updated.

Fixes #2690.
 2020-06-11 16:39:51 +02:00
dependabot-preview[bot]
55b3f0ac41
Bump butterfly from 1.0.2 to 1.0.3 
Bumps [butterfly](https://github.com/OpenRefine/simile-butterfly) from 1.0.2 to 1.0.3.
- [Release notes](https://github.com/OpenRefine/simile-butterfly/releases)
- [Commits](https://github.com/OpenRefine/simile-butterfly/commits)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-11 08:23:39 +00:00
dependabot-preview[bot]
af9e5ab3f0
Bump powermock.version from 2.0.2 to 2.0.7 
Bumps `powermock.version` from 2.0.2 to 2.0.7.

Updates `powermock-module-testng` from 2.0.2 to 2.0.7
- [Release notes](https://github.com/powermock/powermock/releases)
- [Changelog](https://github.com/powermock/powermock/blob/release/2.x/docs/changelog.txt)
- [Commits](https://github.com/powermock/powermock/compare/powermock-2.0.2...powermock-2.0.7)

Updates `powermock-api-mockito2` from 2.0.2 to 2.0.7
- [Release notes](https://github.com/powermock/powermock/releases)
- [Changelog](https://github.com/powermock/powermock/blob/release/2.x/docs/changelog.txt)
- [Commits](https://github.com/powermock/powermock/compare/powermock-2.0.2...powermock-2.0.7)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-11 08:23:05 +00:00
dependabot-preview[bot]
2c490e101c
Bump httpclient from 4.5.5 to 4.5.12 
Bumps httpclient from 4.5.5 to 4.5.12.

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-11 08:22:37 +00:00
dependabot-preview[bot]
cb9fb8ce76
Bump git-commit-id-plugin from 2.2.4 to 4.0.0 
Bumps [git-commit-id-plugin](https://github.com/git-commit-id/maven-git-commit-id-plugin) from 2.2.4 to 4.0.0.
- [Release notes](https://github.com/git-commit-id/maven-git-commit-id-plugin/releases)
- [Commits](https://github.com/git-commit-id/maven-git-commit-id-plugin/compare/v2.2.4...v4.0.0)

Signed-off-by: dependabot-preview[bot] <support@dependabot.com>
 2020-06-11 02:08:41 +00:00
Tom Morris
7c9b78d076
Merge pull request #2654 from OpenRefine/dependabot/maven/org.mozilla-rhino-1.7.12 
Switch to rhino-runtime and bump from 1.7.10 to 1.7.12
 2020-06-10 20:54:01 -04:00