Commit Graph

561 Commits

Author SHA1 Message Date
Tom Morris
28a9f68236
Unit test improvements (#2856)
* Fix two deprecated methods usages

* Test ToNumber conversions

* Test behavior of all functions when passed 0 or 8 arguments

There are 16 which fail currently on 0 args (return null or
False instead of EvalError), but have been whitelisted until
we can verify whether it's safe to change them without introducing
compatibility issues.

There are 19 which fail to return an error on too many (ie 8) args.
2020-07-02 20:29:21 +02:00
Tom Morris
0f3a6006f3
Add Excel95 import test and improve other importer tests (#2844)
No issue.
- we don't support Excel95, but make sure that it generates an exception
- move the test data file into the appropriate directory
- for any normal test, consider exceptions a failure
2020-06-30 08:20:56 +02:00
Tom Morris
421974cc3d
Truncate any completely empty columns on the right (#2842)
Fixes #565
The current versions of Open Office create default spreadsheets
with over 1000 empty columns. Keep track of the rightmost
non-empty column when importing and truncate everything else.

Also adds a basic ODS import test.
2020-06-30 08:19:00 +02:00
Tom Morris
83f52d4ba5
Fall back to Apache Jena 3.9.0 (from 3.15.0) (#2826)
Fixes #2824
Versions up through 3.14.0 appear to work, but since odfdom bundles
Jena 3.9.0, we're going to be conservative and match that.

As an added bonus, includes a blank node test which will trigger
the failure.
2020-06-27 23:40:21 +02:00
Tom Morris
4b146acc6e
Create Project import improvements (#2806)
* Fix charset encoding & MIME type handling

Character set (ie what we call "encoding") is part of the Content-Type,
*not* the Content-Encoding, which specifies compression (e.g. gzip).

This correctly sets the character set encoding as well as cleaning
the MIME type so that additional parsing doesn't need to be done
downstream (and removes that code).

* Use "text" instead of "text/line-based" as default fallback format

The TextLineBasedGuesser only tries a limited number of
formats (CSV, TSV, fixed), so we can't get out of that hole to
find JSON, XML, etc.

Start with a more general format instead to improve our
guessing odds.

* Support content type Structured Name Syntax Suffixes (+json +xml)

If we can't find a fully specified content type in our lookup,
fall back to just the suffix (which is registered with a leading +)
Fixes #2800 Fixes #2805
2020-06-25 08:36:57 +02:00
Tom Morris
1849e62234
Better error handling for reconciliation process - fixes #2590 (#2671)
* Harden reconciliation - Fixes #2590

- check for non-JSON / unparseable JSON returns
- handle malformed results response with no name for candidates
- catch any Exception, not just IOExceptions
- call processManager.onFailedProcess() for cleanup on error

* Add default constructor for Jackson

Jackson complains about needing a default constructor for the
NON_DEFAULT annotation, but I'm not sure why this worked before.

* Clean up indentation and unused variable - no functional changes

Make indentation consistent throughout the module, changing recently
added lines to use the standard all spaces convention.

Remove unused count variable

* Simplify control flow

* Update limit parameter comment. No functional change.

* Replace ternary expression which is causing NPE

* Add reconciliation tests using mock HTTP server
2020-06-23 21:54:54 +02:00
Tom Morris
e293602897
Restore character encoding guesser (#2755)
* Fixes #486. Builds on code from Steffen Stundzig

- Switch from ICU4J to juniversalchardet
  (Java port of Mozilla charset detector)
- Replace org.json code with Jackson
- Add tests
- Add TODO for multi-file character encoding mismatches

* Restore dependency lost in rebase

Co-authored-by: Steffen Stundzig <git@stundzig.de>
2020-06-22 06:04:51 +02:00
Tom Morris
77b858db18
Fix race in Process Manager (#2748)
* Remove redundant JSON diff logging

* Fix race in process manager test causing intermittent failure
2020-06-17 21:24:25 +02:00
Tom Morris
749704518c
Use Apache HTTP Commons for Fetch URL (#2692)
* Use mockwebserver instead of live network for tests

Fixes #2680. Fixes #1904.

* Remove use of deprecated methods

* Convert to use Apache HTTP Components client library

Fixes #1410 by virtue of redirect following being a built-in
capability of the library, along with retries with binary backoff,
built-in decompression, etc.

* Address review comments
2020-06-16 09:38:06 +02:00
james-cui
04055153a1
add archive column (#2573)
Co-authored-by: Antonin Delpeuch <antonin@delpeuch.eu>
2020-06-15 19:56:00 +02:00
Joanne Ong
d57d76f7df
Fix imprecise facet statistics in records mode (#2607)
* Fix bug in choice counts for records mode

* Add test for value grouper on records

* Refactor and comment code

* Count distinct instances of null/blank data

* Update test to check for blank data count in records

* Remove unnecessary import statement
2020-06-15 19:38:50 +02:00
Lisa Chandra
947356ddad
[FEAT]Adds new options for split (#2471)
* added options ui

* added definition for both separators

* added tests

* removed definitions from backend and added them to frontend

* added reverse order and handling for accented characters

* added tests for accented characters and reverse split

* fixed build errors

* unicode character ranges instead

* added examples
2020-06-15 19:30:18 +02:00
chuhao zeng
9b03ecae41
Convert illegal characters into legal ones. (#2431)
* Convert illegal characters into leagal ones.

* Test tab in key & value string

Also fix up test that depended on previous TAB
related error message and clean up logging

Co-authored-by: Tom Morris <tfmorris@gmail.com>
2020-06-14 09:47:58 +02:00
Tom Morris
18c18e587e
Replace Apache Ant with Commons Compress (#2691)
NOTE: Changes the public API where some of the old types were
embedded which means that any extensions that extend these
interfaces will have to be updated.

Fixes #2690.
2020-06-11 16:39:51 +02:00
Tom Morris
e6ed8e5d62
Save preferences JSON using UTF-8 encoding. Bulletproof prefs load. (#2657)
* Save preferences JSON using UTF-8 encoding. Bulletproof prefs load.

Fixes #2543. Fixes #2627.

Always use UTF-8 to write JSON because platform default encoding
might not be legal JSON (e.g. ISO 8859-1).

Also be more conservative about keeping backups if we fail to write.

* Handle case where backup prefs is better than more recent

* Recover from corrupted prefs with null starred list.

Fixes #2544. Replaces null with an empty list.

* Run tests with non-UTF-8 encoding

Make sure that we don't depend on UTF-8 being the default encoding
because it isn't true everywhere (e.g. Windows)

* Add test for non-ASCII chars in workspace.json

This depends on the default Java encoding being something
other than UTF-8 to test properly.
2020-06-06 10:00:01 +01:00
Antoine Beaubien
3ca08f6ff1
Changed cell.error to cell.errorMessage & added help data. (#2628)
* Changed cell.error to cell.errorMessage & added help data.

Changed cell.error to cell.errorMessage and added the informations into the internal help system.

* FR Text correction

* HU Fix text

3 instead of 2.
2020-05-23 14:05:25 +02:00
Lu Liu
e89eaf0ee2
support default project name and column name for cross() (#2518) 2020-05-22 09:39:57 +02:00
Tom Morris
557ffad920
Merge pull request #2586 from OpenRefine/issue-2510-type-boolean
Support "boolean" return for type() function.  Closes #2510
2020-05-18 17:24:47 -04:00
Antoine2711
0e86619d86 Fix the true.type() == "boolean"
Fix the true.type() == "boolean" instead of java.lang.Boolean.

Remove all the references to "error" result  in Type(). This will be addressed in:
@ToDo fix this with issue #2562
2020-05-18 17:23:43 -04:00
Antonin Delpeuch
825e687b0b
Fix bug when both trim and autodetect are enabled in tabular parser. Closes #2584 (#2610) 2020-05-05 14:00:17 +02:00
PJ Fanning
ab64303cbb
allow xlsx files to have more columns (#2602) 2020-04-26 17:07:26 +02:00
PJ Fanning
fe7fcce94b
small improvement to xls tests (#2599) 2020-04-26 16:02:20 +02:00
PJ Fanning
1a0e187561
correct excel mime types (#2596)
* correct excel mime types

* address PR issue

* remove use of wildcard
2020-04-26 14:36:37 +02:00
Thad Guidry
009c587437
remove unused imports (#2574) 2020-04-21 15:51:01 +02:00
Lu Liu
bf84fc9cf1
use string representation for matching (#2571) 2020-04-20 09:07:09 +02:00
Ekta Mishra
05b6a7b2ae
Provides more intuitive representation for arrays in GREL (#2488)
Added test for same
closes #2040
2020-04-01 10:59:25 +02:00
chuhao zeng
1f0111eaed
Fix silent error in JSON/XML importers (#2414)
* Add error handler for parse error

* Add test for parsing json with incorrect strecture

* Enable localization from front-end

* Add methods to get localized error messages

* Update returned exception message

* Remove unused log and fix file diff issue

* Test auto build

* Refactor getOptions in newly created test

* Use new exception to unwrap original message

* Undo unexpected fix

* Remove unused lines

* Fix exception logic

* Fix typo
2020-03-27 09:41:49 +01:00
Lu Liu
f2b06418da
Support lookup by numbers for GREL cross function (#2468)
* support int & long argument for cross function

* support any types of a cell value
2020-03-26 08:57:10 +01:00
chuhao zeng
70b4c6a6d0
Enable gzip compression (#2475)
* Enable gzip compression

* Add test for gzip parser
2020-03-26 08:42:55 +01:00
chuhao zeng
e484625adf
Fix: Data losses when importing multiple sheets from same Excell file (#2404)
* Fix loosing data when importing multiple sheets from same source Excell file

* Add test for importing multi sheets with different column size

* Fix space issues

* Restore old tests and implement new test cases for the new feature

* Restore unexpected delete

* Refactor fix

* Restore unexpected line delete

* Add new unit test for new feature
2020-03-23 22:41:23 +01:00
Lu Liu
9ad3b1080f
Make cross() function work for all columns (#2456)
* fix #1950

* migrate from join to lookup

* reformat
2020-03-23 14:48:32 +01:00
Lisa Chandra
ef8ad85c3c
Adds trim whitespace option to separator based files (#2408)
* added trim ui to csv importer

* added trim functionality

* trimStrings handler only for strings

* added test for trimStrings option in csv/tsv files

* made trim option enabled by default
2020-03-21 10:38:43 +00:00
Albin Larsson
9745bfe374
consistent usage of Apache http status constants (#2432) 2020-03-18 06:40:52 +00:00
Albin Larsson
0233e7186b
CSVExporter: add test case for quoteAll option (#2430) 2020-03-18 04:39:32 +00:00
Lisa Chandra
a91691cb6b
[FIX] json/xml trim whitespace configuration option (#2415)
* trimStrings condition

* added test for trimString xml

* added trimStrings check for json
2020-03-15 16:04:01 +00:00
Lu Liu
14ef45efb2
mock reconciliation service (#2410) 2020-03-14 09:40:15 +00:00
zengchu2
c90fd31daf
Add cell.error field for error messages (#2363)
* Add case for querying cell.error for error messages

* Add testing file

* Refactor test case for cell with error

* Reformat spaces
2020-03-10 10:14:15 +00:00
jamessspanggg
67b62c5c16 EditOneCellCommandTests: Add number parsing tests 2020-01-08 09:55:51 +08:00
Antonin Delpeuch
904129d0f7 Fix other NPE in expression logging, for #2264 2020-01-06 06:30:56 +01:00
Antonin Delpeuch
14dd4c0112
Merge pull request #2264 from OpenRefine/issue-2086-expression-logging-npe
Fix NPE in expression logging.
2019-12-30 21:52:58 +01:00
Antonin Delpeuch
08e175dc66 Fix NPE in expresion logging. Closes #2086. 2019-12-25 12:33:42 +01:00
Antonin Delpeuch
78853f8fb2 More robust URI detection in tabular exporter. Closes #2213. 2019-12-25 11:33:03 +01:00
Antonin Delpeuch
cc5498a42a
Return best loaded language code in LoadLanguageCommand. (#2232)
Closes #2227.
2019-11-27 15:35:18 +00:00
Antonin Delpeuch
85e40b8c45 Fix typo 2019-11-07 17:52:38 +01:00
Antonin Delpeuch
efbfce29bb Add server-side language fallback.
This allows to keep the same Javascript calls to load languages, so it
does not require any change for extensions to benefit from this.

Closes #1350. Fixes #2209.
2019-11-07 17:23:02 +01:00
Antonin Delpeuch
5dc005749a Add CSRF protection to remaining commands 2019-10-15 12:07:13 +01:00
Antonin Delpeuch
3559eeb11f CSRF protection for project and recon commands 2019-10-15 12:07:12 +01:00
Antonin Delpeuch
a340c137d0 CSRF protection for OpenWorkspaceDirCommand and language loading 2019-10-15 12:07:04 +01:00
Antonin Delpeuch
91cead27f8 CSRF protection for ImportingController 2019-10-14 16:24:26 +01:00
Antonin Delpeuch
70e37b9085 Add CSRF protection to cell, history, column and expr commands 2019-10-14 16:24:26 +01:00
Antonin Delpeuch
51ddd27909 Require CSRF token in EditOneCellCommand 2019-10-14 16:24:26 +01:00
Antonin Delpeuch
21b841a089 Add CSRF token generation capabilities, for #2164 2019-10-14 16:24:26 +01:00
viniciusbds
6743d5c878 Change strings comparison to use equals comparator 2019-10-01 23:05:24 -03:00
Antonin Delpeuch
bbb5766a33
Merge pull request #2155 from OpenRefine/issue-2152-lonely-clusters
Fix clusters with single candidates.
2019-09-18 19:08:18 +01:00
Antonin Delpeuch
36150a874d Fix scatterplot facet filtering 2019-09-12 11:52:28 +01:00
Antonin Delpeuch
573ba18e6d Fix scatterplot drawing command, closes #2117 2019-09-12 10:43:12 +01:00
Antonin Delpeuch
fdf742b052 Unlink wikidata extension from RefineTest 2019-09-12 10:24:25 +01:00
Antonin Delpeuch
95b063162d Fix clusters with single candidates. Closes #2152. 2019-09-11 12:12:32 +01:00
Antonin Delpeuch
3e241871cc Mock HTTP calls in data extension tests. Closes #1904. 2019-08-27 19:52:21 +01:00
Antonin Delpeuch
29f3cef3ec Remove uses of junit, closes #2133 2019-08-23 14:09:27 +01:00
Antonin Delpeuch
46acc21a43 Move tests to their appropriate packages and deduplicate them, for #2133 2019-08-23 13:27:20 +01:00
Antonin Delpeuch
2b03efd84f Rename test packages to match tested ones, for #2133 2019-08-23 11:55:31 +01:00
Antonin Delpeuch
6e96441684 Merge test files for Find function 2019-07-21 16:18:19 +01:00
Owen Stephens
ac7b5a0a19 Update Find and Tests 2019-07-21 13:34:18 +01:00
Owen Stephens
d6999de0da Match only accepts regular expressions 2019-07-21 13:19:34 +01:00
Owen Stephens
0560b772f1 Add test for finding literals 2019-07-21 12:46:12 +01:00
Antonin Delpeuch
33ff7be18a Fix NPE in StandardReconConfig. Closes #2076. 2019-07-03 10:21:45 +02:00
Antonin Delpeuch
9d76b04a1c Remove duplicate JSON keys. Closes #2068. 2019-06-14 11:38:24 +01:00
Krzysztof 'impune-pl' Prorok
ceb367b906 Updated tests for issue 1998 2019-06-04 17:05:44 +02:00
Antonin Delpeuch
51a8cbf946
Merge pull request #2042 from stanakaj/issue-2041
Fix column removal in reorder leaves undeleted hidden cells.
2019-05-31 08:41:13 +01:00
Antonin Delpeuch
b366b29da1 Fix #2025: XLSX tests locale dependency 2019-05-15 11:49:53 +01:00
s_tanaka
b8b9feac0c Fix column removal in reorder leaves undeleted hidden cells. 2019-05-15 19:37:40 +09:00
Antonin Delpeuch
0332be312f Fix JSON history corruption.
Also adds new logic to preserve the JSON representation of unknown operations,
to protect from version downgrading or removal of extensions.

Closes #1990.
2019-04-18 20:31:41 +01:00
Owen Stephens
794a17c98e Added XLSX exporter tests 2019-04-09 16:58:58 +01:00
Owen Stephens
e2aa929908 Ensure workbooks are closed after reading/writing 2019-04-09 15:02:10 +01:00
Owen Stephens
461b352035 Add test for reading XLSX 2019-04-09 13:50:42 +01:00
Owen Stephens
81a82499b5 Added tests for serializing cells containing dates and numbers 2019-04-04 23:00:56 +01:00
Owen Stephens
62bcc80dcc Add tests for serialisation of Booleans and Numbers in cells 2019-04-04 11:41:35 +01:00
Owen Stephens
7425418011 Add RandomNumber GREL function 2019-03-24 20:16:43 +00:00
Owen Stephens
fe6abedc52 Add inArray function to GREL 2019-03-24 19:50:25 +00:00
Antonin Delpeuch
5c44acc0b3
Merge pull request #1985 from ostephens/cross-error-reporting
Cross error reporting
2019-03-24 08:16:58 +00:00
Owen Stephens
722db56071 Add tests for new Cross errors 2019-03-23 14:15:23 +00:00
Antonin Delpeuch
7f6831523e
Merge pull request #1969 from OpenRefine/revert-1888-fix-reconcile-facets
Revert "Fix Reconcile facets affected by change to list facet boolean handling"
2019-02-27 10:33:21 +00:00
Antonin Delpeuch
7144798aac
Merge pull request #1967 from OpenRefine/compute_recon_features_bug
Fix Recon features computation for empty recons
2019-02-23 19:08:11 +00:00
Antonin Delpeuch
2bfc268e69 Revert "Merge pull request #1666 from ostephens/list-facet-changes"
This reverts commit 29a818f7b4, reversing
changes made to 1189cdb4f9.
2019-02-22 18:38:45 +00:00
Antonin Delpeuch
deb7335848 Fix Recon features computation for empty recons 2019-02-22 09:15:42 +00:00
Antonin Delpeuch
a072328637 Accept URIs in 'Use values as ids' operation.
Closes #1953.
2019-02-19 22:06:35 +00:00
Antonin Delpeuch
3a213b482c Fix failing test 2019-02-19 12:39:50 +00:00
Antonin Delpeuch
fcc6aa05d7 Provide default identifierSpace and schemaSpace for reconciliation services. Closes #1936. 2019-01-22 19:04:25 +01:00
Antonin Delpeuch
eb16784f01
Merge pull request #1924 from OpenRefine/issue1907
Disable DTDs in XML importer.
2019-01-07 14:07:30 +01:00
Antonin Delpeuch
e5da39fa4a
Merge pull request #1920 from OpenRefine/issue1913
Reorder reconciliation results by decreasing score
2019-01-06 15:55:51 +01:00
Antonin Delpeuch
6a0d7d56e4 Disable DTDs in XML importer. Closes #1907. 2018-12-31 16:02:34 +01:00
Antonin Delpeuch
ddd9bf9aa8
Merge pull request #1906 from OpenRefine/issue1893
Make clustering extensible
2018-12-31 14:13:46 +01:00
Antonin Delpeuch
79ec6988d6 Fix GetCLusteringFunctionANdDistancesCommandTest 2018-12-30 22:22:50 +01:00
Antonin Delpeuch
074765f816 Add test to ensure sort is stable. 2018-12-30 20:49:18 +01:00
Antonin Delpeuch
b03dbf2446 Reorder reconciliation results by decreasing score. Fixes #1913. 2018-12-30 20:47:12 +01:00
Jacky
150ee12058
Merge pull request #1902 from OpenRefine/cleanup
Tidy up various things
2018-12-11 20:59:50 -05:00
Antonin Delpeuch
8063ca63d9 Add license headers 2018-12-11 12:10:11 +00:00
Antonin Delpeuch
7ae71470ef Add new command to expose known clustering functions and distances 2018-12-11 10:51:29 +00:00
Jacky
7f7b71459c
Merge pull request #1901 from OpenRefine/issue1840
Fix zip slip vulnerability
2018-12-09 12:05:16 -05:00