/* Copyright 2011, Google Inc. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of Google Inc. nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ package com.google.refine.pcaxis; import java.io.IOException; import java.io.LineNumberReader; import java.util.ArrayList; import java.util.Collections; import java.util.Comparator; import java.util.HashMap; import java.util.LinkedList; import java.util.List; import java.util.Map; import com.google.refine.importers.TabularImportingParserBase.TableDataReader; public class PCAxisTableDataReader implements TableDataReader { final private static class Dimension { String name; List values; int next; } final private LineNumberReader _lnReader; final private List exceptions; String _line = null; List _dimensions = null; public PCAxisTableDataReader(LineNumberReader lnReader, List exceptions) { this._lnReader = lnReader; this.exceptions = exceptions; } @Override public List getNextRowOfCells() throws IOException { if (_line == null) { _line = _lnReader.readLine(); } if (_line == null) { return null; } if (_dimensions == null) { return parseMetadataPrologueForColumnNames(); } else { return parseForNextDataRow(); } } private List parseMetadataPrologueForColumnNames() throws IOException { _dimensions = new LinkedList(); List dimensionNames = new ArrayList(); while (_line != null) { int equal = _line.indexOf('='); if (equal < 0 || _line.startsWith("DATA=")) { break; } // Save the line in case parseValues() changes it. String savedLine = _line; List values = parseMetadataValues(equal + 1, exceptions); if (savedLine.startsWith("VALUES(\"")) { Dimension dimension = new Dimension(); dimension.name = savedLine.substring(8, equal - 2); dimension.values = values; _dimensions.add(dimension); } else if (savedLine.startsWith("STUB=")) { dimensionNames.addAll(0, values); } else if (savedLine.startsWith("HEADING=")) { dimensionNames.addAll(values); } _line = _lnReader.readLine(); } final Map dimensionNameToOrder = new HashMap(); for (int i = 0; i < dimensionNames.size(); i++) { dimensionNameToOrder.put(dimensionNames.get(i), dimensionNames.size() - i - 1); } Collections.sort(_dimensions, new Comparator() { @Override public int compare(Dimension d0, Dimension d1) { return dimensionNameToOrder.get(d0.name) .compareTo(dimensionNameToOrder.get(d1.name)); } }); List columnNames = new LinkedList(); for (int i = _dimensions.size() - 1; i >= 0; i--) { columnNames.add(_dimensions.get(i).name); } columnNames.add("value"); return columnNames; } private List parseMetadataValues(int start, List _exceptions) throws IOException { List values = new ArrayList(); outer:while (_line != null && start < _line.length()) { char c = _line.charAt(start); if (c == '"') { // A string StringBuffer sb = new StringBuffer(); inner:while (_line != null && start < _line.length()) { int close = _line.indexOf('"', start + 1); if (close < 0) { // Exceptional case of missing closing " _exceptions.add(new Exception( "Missing closing quotation mark on line " + _lnReader.getLineNumber())); sb.append(_line.substring(start + 1)); values.add(sb.toString()); break outer; } else { sb.append(_line.substring(start + 1, close)); if (close == _line.length() - 1) { // String value continues on next line _line = _lnReader.readLine(); start = 0; if (_line != null && _line.length() > 0) { c = _line.charAt(0); if (c == '"') { continue inner; } } break; } else { start = close + 1; break; } } } values.add(sb.toString()); } else { // A number or identifier int comma = customIndexOf(_line, ',', start + 1); int semicolon = customIndexOf(_line, ';', start + 1); int space = customIndexOf(_line, ' ', start + 1); int end = Math.min(comma, Math.min(semicolon, space)); values.add(_line.substring(start, end)); start = end; } if (start == _line.length()) { // End of line but no ;. Continue onto next line. _line = _lnReader.readLine(); start = 0; } else { c = _line.charAt(start); if (c == ';' || c == ')') { break; } else if (c == ',' || c == ' ' || c == '-') { start++; if (start == _line.length()) { _line = _lnReader.readLine(); start = 0; } } else { // Exceptional case. _exceptions.add(new Exception( "Unrecognized character " + c + " on line " + _lnReader.getLineNumber())); break; } } } return values; } private List parseForNextDataRow() throws IOException { List cells = getNextBatchOfDataValues(1); if (cells.size() == 0) { return null; } if (_dimensions.size() > 0) { for (int i = 0; i < _dimensions.size(); i++) { Dimension d = _dimensions.get(i); if (d.next == d.values.size()) { d.next = 0; if (i < _dimensions.size() - 1) { _dimensions.get(i + 1).next++; } } cells.add(0, d.values.get(d.next)); if (i == 0) { d.next++; } } } return cells; } private List getNextBatchOfDataValues(int expectedCount) throws IOException { List cells = new LinkedList(); int start = _line.startsWith("DATA=") ? 5 : 0; while (_line != null) { int end = Math.min( customIndexOf(_line, ';', start), Math.min( customIndexOf(_line, ' ', start), customIndexOf(_line, '\t', start))); if (end > start) { cells.add(_line.substring(start, end)); } while (end < _line.length()) { if (Character.isWhitespace(_line.charAt(end))) { end++; } else { break; } } if (end == _line.length()) { _line = _lnReader.readLine(); start = 0; } else if (_line.charAt(end) == ';') { _line = _lnReader.readLine(); break; } else { start = end; } if (cells.size() == expectedCount) { _line = _line.substring(start); break; } } return cells; } static private int customIndexOf(String s, char c, int start) { int i = s.indexOf(c, start); return i < 0 ? s.length() : i; } }