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sacred3

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s434766 2021-05-11 22:16:03 +02:00
parent 34e2139417
commit b3d4c74ecb
2 changed files with 46 additions and 47 deletions
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1
pytorch-training-eval/Dockerfile
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@ -2,7 +2,6 @@ FROM ubuntu:latest
RUN apt-get update && apt-get install -y python3-pip && pip3 install setuptools && pip3 install numpy && pip3 install pandas && pip3 install wget && pip3 install scikit-learn && pip3 install matplotlib && rm -rf /var/lib/apt/lists/* RUN apt-get update && apt-get install -y python3-pip && pip3 install setuptools && pip3 install numpy && pip3 install pandas && pip3 install wget && pip3 install scikit-learn && pip3 install matplotlib && rm -rf /var/lib/apt/lists/*
RUN pip3 install torch torchvision torchaudio RUN pip3 install torch torchvision torchaudio
RUN pip3 install sacred
WORKDIR /app WORKDIR /app
COPY ./../create.py ./ COPY ./../create.py ./

20
stroke-pytorch.py
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@ -13,10 +13,10 @@ from sacred import Experiment
from sacred.observers import FileStorageObserver from sacred.observers import FileStorageObserver
np.set_printoptions(suppress=False) np.set_printoptions(suppress=False)
ex = Experiment("stroke-pytorch", interactive=True) # ex = Experiment("stroke-pytorch", interactive=True)
ex.observers.append(FileStorageObserver('ium_s434766O_files')) # ex.observers.append(FileStorageObserver('ium_s434766O_files'))
ex.observers.append(MongoObserver(url='mongodb://mongo_user:mongo_password_IUM_2021@localhost:27017', # ex.observers.append(MongoObserver(url='mongodb://mongo_user:mongo_password_IUM_2021@localhost:27017',
db_name='sacred')) # db_name='sacred'))
class LogisticRegressionModel(nn.Module): class LogisticRegressionModel(nn.Module):
def __init__(self, input_dim, output_dim): def __init__(self, input_dim, output_dim):
super(LogisticRegressionModel, self).__init__() super(LogisticRegressionModel, self).__init__()
@ -26,8 +26,8 @@ class LogisticRegressionModel(nn.Module):
out = self.linear(x) out = self.linear(x)
return self.sigmoid(out) return self.sigmoid(out)
@ex.main # @ex.main
def my_main(_log): # def my_main(_log):
data_train = pd.read_csv("data_train.csv") data_train = pd.read_csv("data_train.csv")
data_test = pd.read_csv("data_test.csv") data_test = pd.read_csv("data_test.csv")
data_val = pd.read_csv("data_val.csv") data_val = pd.read_csv("data_val.csv")
@ -51,7 +51,7 @@ def my_main(_log):
input_dim = 6 input_dim = 6
output_dim = 1 output_dim = 1
info_params = "Batch size = " + str(batch_size) + " Epochs = " + str(num_epochs) info_params = "Batch size = " + str(batch_size) + " Epochs = " + str(num_epochs)
_log.info(info_params) # _log.info(info_params)
model = LogisticRegressionModel(input_dim, output_dim) model = LogisticRegressionModel(input_dim, output_dim)
criterion = torch.nn.BCELoss(reduction='mean') criterion = torch.nn.BCELoss(reduction='mean')
@ -70,10 +70,10 @@ def my_main(_log):
loss.backward() loss.backward()
optimizer.step() optimizer.step()
info_loss = "Last loss = " + str(loss.item()) info_loss = "Last loss = " + str(loss.item())
_log.info(info_loss) # _log.info(info_loss)
y_pred = model(fTest) y_pred = model(fTest)
# print("predicted Y value: ", y_pred.data) print("predicted Y value: ", y_pred.data)
torch.save(model.state_dict(), 'stroke.pth') torch.save(model.state_dict(), 'stroke.pth')
ex.run() # ex.run()