from __future__ import division, absolute_import, print_function # doctest r''' Test the .npy file format. Set up: >>> import sys >>> from io import BytesIO >>> from numpy.lib import format >>> >>> scalars = [ ... np.uint8, ... np.int8, ... np.uint16, ... np.int16, ... np.uint32, ... np.int32, ... np.uint64, ... np.int64, ... np.float32, ... np.float64, ... np.complex64, ... np.complex128, ... object, ... ] >>> >>> basic_arrays = [] >>> >>> for scalar in scalars: ... for endian in '<>': ... dtype = np.dtype(scalar).newbyteorder(endian) ... basic = np.arange(15).astype(dtype) ... basic_arrays.extend([ ... np.array([], dtype=dtype), ... np.array(10, dtype=dtype), ... basic, ... basic.reshape((3,5)), ... basic.reshape((3,5)).T, ... basic.reshape((3,5))[::-1,::2], ... ]) ... >>> >>> Pdescr = [ ... ('x', 'i4', (2,)), ... ('y', 'f8', (2, 2)), ... ('z', 'u1')] >>> >>> >>> PbufferT = [ ... ([3,2], [[6.,4.],[6.,4.]], 8), ... ([4,3], [[7.,5.],[7.,5.]], 9), ... ] >>> >>> >>> Ndescr = [ ... ('x', 'i4', (2,)), ... ('Info', [ ... ('value', 'c16'), ... ('y2', 'f8'), ... ('Info2', [ ... ('name', 'S2'), ... ('value', 'c16', (2,)), ... ('y3', 'f8', (2,)), ... ('z3', 'u4', (2,))]), ... ('name', 'S2'), ... ('z2', 'b1')]), ... ('color', 'S2'), ... ('info', [ ... ('Name', 'U8'), ... ('Value', 'c16')]), ... ('y', 'f8', (2, 2)), ... ('z', 'u1')] >>> >>> >>> NbufferT = [ ... ([3,2], (6j, 6., ('nn', [6j,4j], [6.,4.], [1,2]), 'NN', True), 'cc', ('NN', 6j), [[6.,4.],[6.,4.]], 8), ... ([4,3], (7j, 7., ('oo', [7j,5j], [7.,5.], [2,1]), 'OO', False), 'dd', ('OO', 7j), [[7.,5.],[7.,5.]], 9), ... ] >>> >>> >>> record_arrays = [ ... np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('<')), ... np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('<')), ... np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('>')), ... np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('>')), ... ] Test the magic string writing. >>> format.magic(1, 0) '\x93NUMPY\x01\x00' >>> format.magic(0, 0) '\x93NUMPY\x00\x00' >>> format.magic(255, 255) '\x93NUMPY\xff\xff' >>> format.magic(2, 5) '\x93NUMPY\x02\x05' Test the magic string reading. >>> format.read_magic(BytesIO(format.magic(1, 0))) (1, 0) >>> format.read_magic(BytesIO(format.magic(0, 0))) (0, 0) >>> format.read_magic(BytesIO(format.magic(255, 255))) (255, 255) >>> format.read_magic(BytesIO(format.magic(2, 5))) (2, 5) Test the header writing. >>> for arr in basic_arrays + record_arrays: ... f = BytesIO() ... format.write_array_header_1_0(f, arr) # XXX: arr is not a dict, items gets called on it ... print(repr(f.getvalue())) ... "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '|u1', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '|u1', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '|i1', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '|i1', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'u2', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>u2', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'i2', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>i2', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'u4', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>u4', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'i4', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>i4', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'u8', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>u8', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'i8', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>i8', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'f4', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>f4', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'f8', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>f8', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'c8', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>c8', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'c16', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': '>c16', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': 'O', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 3)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (0,)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': ()} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (15,)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 5)} \n" "F\x00{'descr': 'O', 'fortran_order': True, 'shape': (5, 3)} \n" "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 3)} \n" "v\x00{'descr': [('x', 'i4', (2,)), ('y', '>f8', (2, 2)), ('z', '|u1')],\n 'fortran_order': False,\n 'shape': (2,)} \n" "\x16\x02{'descr': [('x', '>i4', (2,)),\n ('Info',\n [('value', '>c16'),\n ('y2', '>f8'),\n ('Info2',\n [('name', '|S2'),\n ('value', '>c16', (2,)),\n ('y3', '>f8', (2,)),\n ('z3', '>u4', (2,))]),\n ('name', '|S2'),\n ('z2', '|b1')]),\n ('color', '|S2'),\n ('info', [('Name', '>U8'), ('Value', '>c16')]),\n ('y', '>f8', (2, 2)),\n ('z', '|u1')],\n 'fortran_order': False,\n 'shape': (2,)} \n" ''' import sys import os import shutil import tempfile import warnings import pytest from io import BytesIO import numpy as np from numpy.testing import ( assert_, assert_array_equal, assert_raises, assert_raises_regex, assert_warns ) from numpy.lib import format tempdir = None # Module-level setup. def setup_module(): global tempdir tempdir = tempfile.mkdtemp() def teardown_module(): global tempdir if tempdir is not None and os.path.isdir(tempdir): shutil.rmtree(tempdir) tempdir = None # Generate some basic arrays to test with. scalars = [ np.uint8, np.int8, np.uint16, np.int16, np.uint32, np.int32, np.uint64, np.int64, np.float32, np.float64, np.complex64, np.complex128, object, ] basic_arrays = [] for scalar in scalars: for endian in '<>': dtype = np.dtype(scalar).newbyteorder(endian) basic = np.arange(1500).astype(dtype) basic_arrays.extend([ # Empty np.array([], dtype=dtype), # Rank-0 np.array(10, dtype=dtype), # 1-D basic, # 2-D C-contiguous basic.reshape((30, 50)), # 2-D F-contiguous basic.reshape((30, 50)).T, # 2-D non-contiguous basic.reshape((30, 50))[::-1, ::2], ]) # More complicated record arrays. # This is the structure of the table used for plain objects: # # +-+-+-+ # |x|y|z| # +-+-+-+ # Structure of a plain array description: Pdescr = [ ('x', 'i4', (2,)), ('y', 'f8', (2, 2)), ('z', 'u1')] # A plain list of tuples with values for testing: PbufferT = [ # x y z ([3, 2], [[6., 4.], [6., 4.]], 8), ([4, 3], [[7., 5.], [7., 5.]], 9), ] # This is the structure of the table used for nested objects (DON'T PANIC!): # # +-+---------------------------------+-----+----------+-+-+ # |x|Info |color|info |y|z| # | +-----+--+----------------+----+--+ +----+-----+ | | # | |value|y2|Info2 |name|z2| |Name|Value| | | # | | | +----+-----+--+--+ | | | | | | | # | | | |name|value|y3|z3| | | | | | | | # +-+-----+--+----+-----+--+--+----+--+-----+----+-----+-+-+ # # The corresponding nested array description: Ndescr = [ ('x', 'i4', (2,)), ('Info', [ ('value', 'c16'), ('y2', 'f8'), ('Info2', [ ('name', 'S2'), ('value', 'c16', (2,)), ('y3', 'f8', (2,)), ('z3', 'u4', (2,))]), ('name', 'S2'), ('z2', 'b1')]), ('color', 'S2'), ('info', [ ('Name', 'U8'), ('Value', 'c16')]), ('y', 'f8', (2, 2)), ('z', 'u1')] NbufferT = [ # x Info color info y z # value y2 Info2 name z2 Name Value # name value y3 z3 ([3, 2], (6j, 6., ('nn', [6j, 4j], [6., 4.], [1, 2]), 'NN', True), 'cc', ('NN', 6j), [[6., 4.], [6., 4.]], 8), ([4, 3], (7j, 7., ('oo', [7j, 5j], [7., 5.], [2, 1]), 'OO', False), 'dd', ('OO', 7j), [[7., 5.], [7., 5.]], 9), ] record_arrays = [ np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('<')), np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('<')), np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('>')), np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('>')), np.zeros(1, dtype=[('c', ('= 3: fname = 'win64python2.npy' else: fname = 'python3.npy' path = os.path.join(os.path.dirname(__file__), 'data', fname) data = np.load(path) assert_array_equal(data, np.ones(2)) def test_pickle_python2_python3(): # Test that loading object arrays saved on Python 2 works both on # Python 2 and Python 3 and vice versa data_dir = os.path.join(os.path.dirname(__file__), 'data') if sys.version_info[0] >= 3: xrange = range else: import __builtin__ xrange = __builtin__.xrange expected = np.array([None, xrange, u'\u512a\u826f', b'\xe4\xb8\x8d\xe8\x89\xaf'], dtype=object) for fname in ['py2-objarr.npy', 'py2-objarr.npz', 'py3-objarr.npy', 'py3-objarr.npz']: path = os.path.join(data_dir, fname) for encoding in ['bytes', 'latin1']: data_f = np.load(path, allow_pickle=True, encoding=encoding) if fname.endswith('.npz'): data = data_f['x'] data_f.close() else: data = data_f if sys.version_info[0] >= 3: if encoding == 'latin1' and fname.startswith('py2'): assert_(isinstance(data[3], str)) assert_array_equal(data[:-1], expected[:-1]) # mojibake occurs assert_array_equal(data[-1].encode(encoding), expected[-1]) else: assert_(isinstance(data[3], bytes)) assert_array_equal(data, expected) else: assert_array_equal(data, expected) if sys.version_info[0] >= 3: if fname.startswith('py2'): if fname.endswith('.npz'): data = np.load(path, allow_pickle=True) assert_raises(UnicodeError, data.__getitem__, 'x') data.close() data = np.load(path, allow_pickle=True, fix_imports=False, encoding='latin1') assert_raises(ImportError, data.__getitem__, 'x') data.close() else: assert_raises(UnicodeError, np.load, path, allow_pickle=True) assert_raises(ImportError, np.load, path, allow_pickle=True, fix_imports=False, encoding='latin1') def test_pickle_disallow(): data_dir = os.path.join(os.path.dirname(__file__), 'data') path = os.path.join(data_dir, 'py2-objarr.npy') assert_raises(ValueError, np.load, path, allow_pickle=False, encoding='latin1') path = os.path.join(data_dir, 'py2-objarr.npz') f = np.load(path, allow_pickle=False, encoding='latin1') assert_raises(ValueError, f.__getitem__, 'x') path = os.path.join(tempdir, 'pickle-disabled.npy') assert_raises(ValueError, np.save, path, np.array([None], dtype=object), allow_pickle=False) @pytest.mark.parametrize('dt', [ np.dtype(np.dtype([('a', np.int8), ('b', np.int16), ('c', np.int32), ], align=True), (3,)), np.dtype([('x', np.dtype({'names':['a','b'], 'formats':['i1','i1'], 'offsets':[0,4], 'itemsize':8, }, (3,)), (4,), )]), np.dtype([('x', ('