import random import networkx as nx import matplotlib.pyplot as plt from matplotlib import animation class Node: def __init__(self, is_infected=False): self.id = random.randint(1, 2000000) self.is_infected = is_infected def as_tuple(self): return self.id, self.is_infected def __repr__(self): return f'id: {self.id}, infected: {self.is_infected}' class Edge: def __init__(self, node_a: Node, node_b: Node, weight: float): self.node_a = node_a self.node_b = node_b self.weight = weight def as_tuple(self): return self.node_a, self.node_b, {'weight': self.weight} def has_node(self, node: Node) -> bool: return self.node_a is node or self.node_b is node class Graph: def __init__(self, use_weights=False): self.edges = [] self.use_weights = use_weights def add_edge(self, edge: Edge): self.edges.append(edge) def add_edges(self, edges: [Edge]): [self.edges.append(e) for e in edges] def get_nodes(self) -> [Node]: nodes = set() for edge in self.edges: nodes.add(edge.node_a) nodes.add(edge.node_b) return nodes def get_adjacent_nodes(self, node: Node) -> [(Node, int)]: """ :param node: Node to search for :return: An array of tuples (node, weight) """ edges_with_node = filter(lambda ed: ed.has_node(node), self.edges) nodes = set() for e in edges_with_node: if e.node_a is node: nodes.add((e.node_b, e.weight)) else: nodes.add((e.node_a, e.weight)) return nodes def infect_step(self): infected_nodes = list(filter(lambda n: n.is_infected, self.get_nodes())) for node in infected_nodes: adjacent_nodes = self.get_adjacent_nodes(node) if self.use_weights: to_be_infected = random.choices([n[0] for n in adjacent_nodes], weights=[n[1] for n in adjacent_nodes])[0] else: to_be_infected = random.choice([n[0] for n in adjacent_nodes]) to_be_infected.is_infected = True def update(num, layout, g_repr, ax, our_graph: Graph): """ This function is called every 'step', so if you wish to update the graph, do it here """ ax.clear() colors = ['red' if n.is_infected else 'blue' for n in g_repr] sizes = [50 if n.is_infected else 1 for n in g_repr] nx.draw( g_repr, ax=ax, pos=layout, node_color=colors, with_labels=False, node_size=sizes, node_shape="s", alpha=0.5, linewidths=40, ) our_graph.infect_step() def do_graph_animation(output_file_name: str, in_graph: Graph, frame_count: int, layout): g_repr = nx.Graph() # Convert our graph class into tuples understood by networkx g_repr.add_edges_from([e.as_tuple() for e in in_graph.edges]) layout = layout(g_repr) fig, ax = plt.subplots() fig.set_figwidth(15) fig.set_figheight(15) anim = animation.FuncAnimation( fig, update, frames=frame_count, interval=500, fargs=(layout, g_repr, ax, in_graph) ) anim.save(output_file_name) plt.style.use('seaborn') plt.show() def bus_network(n=30, infected_idx=0) -> Graph: network = Graph() nodes = [Node() for _ in range(n)] nodes[infected_idx].is_infected = True edges = [Edge(nodes[i], nodes[i + 1], 1.0) for i in range(n - 1)] network.add_edges(edges) return network def ring_network(n=30) -> Graph: network = Graph() nodes = [Node() for _ in range(n)] nodes[0].is_infected = True edges = [Edge(nodes[i], nodes[i + 1], 1.0) for i in range(n - 1)] end_edge = Edge(nodes[n - 1], nodes[0], 1.0) edges.append(end_edge) network.add_edges(edges) return network def main(): network = Graph() nodes = [Node(True), Node(), Node(), Node(True), Node()] network.add_edges( [ Edge(nodes[1], nodes[0], 0.02), Edge(nodes[1], nodes[2], 0.2), Edge(nodes[2], nodes[0], 0.7), Edge(nodes[3], nodes[2], 0.2), Edge(nodes[3], nodes[1], 0.2), Edge(nodes[4], nodes[3], 0.2), ] ) do_graph_animation('test.gif', network, 5, nx.spring_layout) bus = bus_network() do_graph_animation('bus.gif', bus, 20, nx.spiral_layout) ring = ring_network() do_graph_animation('ring.gif', ring, 20, nx.circular_layout) if __name__ == "__main__": main()