Merge branch 'vm-changes'

This commit is contained in:
s444415 2023-01-04 09:52:13 +01:00
commit ccd4090d4b
6 changed files with 906 additions and 69 deletions

8
config-eval.yaml Normal file
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@ -0,0 +1,8 @@
pretrained_processor_path: "Zombely/plwiki-proto-fine-tuned-v2"
pretrained_model_path: "Zombely/plwiki-proto-fine-tuned-v2"
validation_dataset_path: "Zombely/diachronia-ocr"
validation_dataset_split: "train"
has_metadata: False
print_output: True
output_file_dir: "../../gonito-outs"
test_name: "fine-tuned-test"

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@ -1,48 +1,41 @@
#!/usr/bin/env python
# coding: utf-8
# In[1]:
from transformers import DonutProcessor, VisionEncoderDecoderModel
from transformers import DonutProcessor, VisionEncoderDecoderModel, VisionEncoderDecoderConfig
from datasets import load_dataset
import re
import json
import torch
from tqdm.auto import tqdm
import numpy as np
import pandas as pd
from donut import JSONParseEvaluator
import argparse
from sconf import Config
def main(config):
# In[2]:
# image_size = [1920, 2560]
# config_vision = VisionEncoderDecoderConfig.from_pretrained(config.pretrained_model_path)
# config_vision.encoder.image_size = image_size # (height, width)
# config_vision.decoder.max_length = 768
processor = DonutProcessor.from_pretrained(config.pretrained_processor_path)
model = VisionEncoderDecoderModel.from_pretrained(config.pretrained_model_path)
processor = DonutProcessor.from_pretrained("Zombely/plwiki-proto-fine-tuned")
model = VisionEncoderDecoderModel.from_pretrained("Zombely/plwiki-proto-fine-tuned")
# processor.image_processor.size = image_size[::-1] # should be (width, height)
processor.image_processor.do_align_long_axis = False
dataset = load_dataset(config.validation_dataset_path, split=config.validation_dataset_split)
device = "cuda" if torch.cuda.is_available() else "cpu"
model.eval()
model.to(device)
output_list = []
accs = []
# In[3]:
dataset = load_dataset("Zombely/pl-text-images-5000-whole", split="validation")
# In[4]:
device = "cuda" if torch.cuda.is_available() else "cpu"
model.eval()
model.to(device)
output_list = []
accs = []
for idx, sample in tqdm(enumerate(dataset), total=len(dataset)):
for idx, sample in tqdm(enumerate(dataset), total=len(dataset)):
# prepare encoder inputs
pixel_values = processor(sample["image"].convert("RGB"), return_tensors="pt").pixel_values
pixel_values = processor(sample['image'].convert("RGB"), return_tensors="pt").pixel_values
pixel_values = pixel_values.to(device)
# prepare decoder inputs
task_prompt = "<s_cord-v2>"
@ -68,16 +61,30 @@ for idx, sample in tqdm(enumerate(dataset), total=len(dataset)):
seq = seq.replace(processor.tokenizer.eos_token, "").replace(processor.tokenizer.pad_token, "")
seq = re.sub(r"<.*?>", "", seq, count=1).strip() # remove first task start token
seq = processor.token2json(seq)
if config.has_metadata:
ground_truth = json.loads(sample["ground_truth"])
ground_truth = ground_truth["gt_parse"]
evaluator = JSONParseEvaluator()
score = evaluator.cal_acc(seq, ground_truth)
accs.append(score)
if config.print_output:
print(seq)
output_list.append(seq)
if config.output_file_dir:
df = pd.DataFrame(map(lambda x: x.get('text_sequence', ''), output_list))
df.to_csv(f'{config.output_file_dir}/{config.test_name}-out.tsv', sep='\t', header=False, index=False)
scores = {"accuracies": accs, "mean_accuracy": np.mean(accs)}
print(scores, f"length : {len(accs)}")
print("Mean accuracy:", np.mean(accs))
if config.has_metadata:
scores = {"accuracies": accs, "mean_accuracy": np.mean(accs)}
print(scores, f"length : {len(accs)}")
print("Mean accuracy:", np.mean(accs))
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--config", type=str, required=True)
args, left_argv = parser.parse_known_args()
config = Config(args.config)
config.argv_update(left_argv)
main(config)

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@ -21,16 +21,16 @@ from pytorch_lightning.plugins import CheckpointIO
DATASET_PATH = "Zombely/pl-text-images-5000-whole"
PRETRAINED_MODEL_PATH = "Zombely/plwiki-proto-fine-tuned"
START_MODEL_PATH = "Zombely/plwiki-proto-fine-tuned"
OUTPUT_MODEL_PATH = "Zombely/plwiki-proto-fine-tuned-v2"
LOGGING_PATH = "plwiki-proto-ft-second-iter"
DATASET_PATH = "Zombely/fiszki-ocr-train"
PRETRAINED_MODEL_PATH = "Zombely/plwiki-proto-fine-tuned-v2"
START_MODEL_PATH = "Zombely/plwiki-proto-fine-tuned-v2"
OUTPUT_MODEL_PATH = "Zombely/plwiki-proto-fine-tuned-v3"
LOGGING_PATH = "fiszki-ocr-fine-tune"
CHECKPOINT_PATH = "./checkpoint"
train_config = {
"max_epochs":30,
"max_epochs":1,
"val_check_interval":0.5, # how many times we want to validate during an epoch
"check_val_every_n_epoch":1,
"gradient_clip_val":1.0,
@ -362,7 +362,7 @@ custom_ckpt = CustomCheckpointIO()
trainer = pl.Trainer(
accelerator="gpu", # change to gpu
accelerator="gpu" if torch.cuda.is_available() else 'cpu', # change to gpu
devices=1,
max_epochs=train_config.get("max_epochs"),
val_check_interval=train_config.get("val_check_interval"),

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{
"cells": [
{
"cell_type": "code",
"execution_count": 8,
"metadata": {},
"outputs": [],
"source": [
"import pandas as pd\n",
"from huggingface_hub import login\n",
"from datasets import load_dataset\n",
"import os\n",
"import json\n",
"import shutil"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {},
"outputs": [
{
"data": {
"application/vnd.jupyter.widget-view+json": {
"model_id": "f0476002f8d14822a24f1376cfe29a07",
"version_major": 2,
"version_minor": 0
},
"text/plain": [
"VBox(children=(HTML(value='<center> <img\\nsrc=https://huggingface.co/front/assets/huggingface_logo-noborder.sv…"
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"login(os.environ.get(\"HUG_TOKKEN\"))"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {},
"outputs": [],
"source": [
"df_train = pd.read_csv('../fiszki-ocr/train/in.tsv', sep='\\t', header=None, index_col=False)\n",
"files = [file[0] for file in df_train.iloc()]\n",
"df_train_out = pd.read_csv('../fiszki-ocr/train/expected.tsv', sep='\\t', header=None, index_col=False)\n",
"files_out = [file_out[0] for file_out in df_train_out.iloc()]"
]
},
{
"cell_type": "code",
"execution_count": 18,
"metadata": {},
"outputs": [],
"source": [
"whole = []\n",
"for file, out in zip(files, files_out):\n",
" whole.append({\"file_name\": file, \"ground_truth\": json.dumps({\"gt_parse\": {\"text_sequance\": out}}, ensure_ascii=False)})"
]
},
{
"cell_type": "code",
"execution_count": 19,
"metadata": {},
"outputs": [],
"source": [
"train = whole[:85]\n",
"validation = whole[85:]"
]
},
{
"cell_type": "code",
"execution_count": 20,
"metadata": {},
"outputs": [],
"source": [
"train_files = [file.get(\"file_name\") for file in train]\n",
"validation_files = [file.get(\"file_name\") for file in validation]"
]
},
{
"cell_type": "code",
"execution_count": 14,
"metadata": {},
"outputs": [],
"source": [
"for image in os.listdir(\"../fiszki-ocr/images\"):\n",
" if image in train_files:\n",
" shutil.copy(f\"/home/pc/work/fiszki-ocr/images/{image}\", f\"./images-split-fiszki/train/{image}\")\n",
" if image in validation_files:\n",
" shutil.copy(f\"/home/pc/work/fiszki-ocr/images/{image}\", f\"./images-split-fiszki/validation/{image}\")"
]
},
{
"cell_type": "code",
"execution_count": 21,
"metadata": {},
"outputs": [],
"source": [
"\n",
"with open('./images-split-fiszki/train/metadata.jsonl', 'w', encoding='utf-8') as f:\n",
" for entry in train:\n",
" json.dump(entry, f, ensure_ascii=False)\n",
" f.write(\"\\n\")\n",
"with open('./images-split-fiszki/validation/metadata.jsonl', 'w', encoding='utf-8') as f:\n",
" for entry in validation:\n",
" json.dump(entry, f, ensure_ascii=False)\n",
" f.write(\"\\n\")\n",
" "
]
},
{
"cell_type": "code",
"execution_count": 22,
"metadata": {},
"outputs": [
{
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"model_id": "ca154573c11a44a8a1fa7dede4c54e26",
"version_major": 2,
"version_minor": 0
},
"text/plain": [
"Resolving data files: 0%| | 0/86 [00:00<?, ?it/s]"
]
},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"Using custom data configuration images-split-fiszki-0b6e02834f7867a1\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"Downloading and preparing dataset imagefolder/images-split-fiszki to /home/pc/.cache/huggingface/datasets/imagefolder/images-split-fiszki-0b6e02834f7867a1/0.0.0/37fbb85cc714a338bea574ac6c7d0b5be5aff46c1862c1989b20e0771199e93f...\n",
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"text/plain": [
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},
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"Generating train split: 0 examples [00:00, ? examples/s]"
]
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{
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},
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{
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"text": [
"Dataset imagefolder downloaded and prepared to /home/pc/.cache/huggingface/datasets/imagefolder/images-split-fiszki-0b6e02834f7867a1/0.0.0/37fbb85cc714a338bea574ac6c7d0b5be5aff46c1862c1989b20e0771199e93f. Subsequent calls will reuse this data.\n"
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],
"source": [
"dataset = load_dataset('./images-split-fiszki')"
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},
{
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"execution_count": 23,
"metadata": {},
"outputs": [
{
"name": "stderr",
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"text": [
"Pushing split train to the Hub.\n"
]
},
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]
},
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},
{
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"text": [
"Pushing split validation to the Hub.\n"
]
},
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},
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{
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"Pushing dataset shards to the dataset hub: 0%| | 0/1 [00:00<?, ?it/s]"
]
},
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}
],
"source": [
"dataset.push_to_hub(\"Zombely/fiszki-ocr-train\")"
]
}
],
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