#!/bin/bash
cat output.txt | awk '{print (($7 + $8 + $9)/($7 + $8 + $6))*100;}' > clear.txt
avg=$(numaverage clear.txt)

srr_matching=$(grep -x "0" clear.txt | wc -l)
all=$(cat clear.txt | wc -l)

echo "$srr_matching"
echo "$all"
srr=$(echo "$srr_matching/$all" | bc -l)

echo "Avg WER: $avg" >> clear.txt
echo "SRR: 0$srr" >> clear.txt