projektAI/venv/Lib/site-packages/pandas/core/dtypes/missing.py

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2021-06-06 22:13:05 +02:00
"""
missing types & inference
"""
from functools import partial
import numpy as np
from pandas._config import get_option
from pandas._libs import lib
import pandas._libs.missing as libmissing
from pandas._libs.tslibs import NaT, Period, iNaT
from pandas._typing import ArrayLike, DtypeObj
from pandas.core.dtypes.common import (
DT64NS_DTYPE,
TD64NS_DTYPE,
ensure_object,
is_bool_dtype,
is_categorical_dtype,
is_complex_dtype,
is_datetimelike_v_numeric,
is_dtype_equal,
is_extension_array_dtype,
is_float_dtype,
is_integer_dtype,
is_object_dtype,
is_scalar,
is_string_dtype,
is_string_like_dtype,
needs_i8_conversion,
pandas_dtype,
)
from pandas.core.dtypes.generic import (
ABCDataFrame,
ABCExtensionArray,
ABCIndexClass,
ABCMultiIndex,
ABCSeries,
)
from pandas.core.dtypes.inference import is_list_like
isposinf_scalar = libmissing.isposinf_scalar
isneginf_scalar = libmissing.isneginf_scalar
nan_checker = np.isnan
INF_AS_NA = False
def isna(obj):
"""
Detect missing values for an array-like object.
This function takes a scalar or array-like object and indicates
whether values are missing (``NaN`` in numeric arrays, ``None`` or ``NaN``
in object arrays, ``NaT`` in datetimelike).
Parameters
----------
obj : scalar or array-like
Object to check for null or missing values.
Returns
-------
bool or array-like of bool
For scalar input, returns a scalar boolean.
For array input, returns an array of boolean indicating whether each
corresponding element is missing.
See Also
--------
notna : Boolean inverse of pandas.isna.
Series.isna : Detect missing values in a Series.
DataFrame.isna : Detect missing values in a DataFrame.
Index.isna : Detect missing values in an Index.
Examples
--------
Scalar arguments (including strings) result in a scalar boolean.
>>> pd.isna('dog')
False
>>> pd.isna(pd.NA)
True
>>> pd.isna(np.nan)
True
ndarrays result in an ndarray of booleans.
>>> array = np.array([[1, np.nan, 3], [4, 5, np.nan]])
>>> array
array([[ 1., nan, 3.],
[ 4., 5., nan]])
>>> pd.isna(array)
array([[False, True, False],
[False, False, True]])
For indexes, an ndarray of booleans is returned.
>>> index = pd.DatetimeIndex(["2017-07-05", "2017-07-06", None,
... "2017-07-08"])
>>> index
DatetimeIndex(['2017-07-05', '2017-07-06', 'NaT', '2017-07-08'],
dtype='datetime64[ns]', freq=None)
>>> pd.isna(index)
array([False, False, True, False])
For Series and DataFrame, the same type is returned, containing booleans.
>>> df = pd.DataFrame([['ant', 'bee', 'cat'], ['dog', None, 'fly']])
>>> df
0 1 2
0 ant bee cat
1 dog None fly
>>> pd.isna(df)
0 1 2
0 False False False
1 False True False
>>> pd.isna(df[1])
0 False
1 True
Name: 1, dtype: bool
"""
return _isna(obj)
isnull = isna
def _isna(obj, inf_as_na: bool = False):
"""
Detect missing values, treating None, NaN or NA as null. Infinite
values will also be treated as null if inf_as_na is True.
Parameters
----------
obj: ndarray or object value
Input array or scalar value.
inf_as_na: bool
Whether to treat infinity as null.
Returns
-------
boolean ndarray or boolean
"""
if is_scalar(obj):
if inf_as_na:
return libmissing.checknull_old(obj)
else:
return libmissing.checknull(obj)
# hack (for now) because MI registers as ndarray
elif isinstance(obj, ABCMultiIndex):
raise NotImplementedError("isna is not defined for MultiIndex")
elif isinstance(obj, type):
return False
elif isinstance(obj, (ABCSeries, np.ndarray, ABCIndexClass, ABCExtensionArray)):
return _isna_ndarraylike(obj, inf_as_na=inf_as_na)
elif isinstance(obj, ABCDataFrame):
return obj.isna()
elif isinstance(obj, list):
return _isna_ndarraylike(np.asarray(obj, dtype=object), inf_as_na=inf_as_na)
elif hasattr(obj, "__array__"):
return _isna_ndarraylike(np.asarray(obj), inf_as_na=inf_as_na)
else:
return False
def _use_inf_as_na(key):
"""
Option change callback for na/inf behaviour.
Choose which replacement for numpy.isnan / -numpy.isfinite is used.
Parameters
----------
flag: bool
True means treat None, NaN, INF, -INF as null (old way),
False means None and NaN are null, but INF, -INF are not null
(new way).
Notes
-----
This approach to setting global module values is discussed and
approved here:
* https://stackoverflow.com/questions/4859217/
programmatically-creating-variables-in-python/4859312#4859312
"""
inf_as_na = get_option(key)
globals()["_isna"] = partial(_isna, inf_as_na=inf_as_na)
if inf_as_na:
globals()["nan_checker"] = lambda x: ~np.isfinite(x)
globals()["INF_AS_NA"] = True
else:
globals()["nan_checker"] = np.isnan
globals()["INF_AS_NA"] = False
def _isna_ndarraylike(obj, inf_as_na: bool = False):
"""
Return an array indicating which values of the input array are NaN / NA.
Parameters
----------
obj: array-like
The input array whose elements are to be checked.
inf_as_na: bool
Whether or not to treat infinite values as NA.
Returns
-------
array-like
Array of boolean values denoting the NA status of each element.
"""
values = getattr(obj, "_values", obj)
dtype = values.dtype
if is_extension_array_dtype(dtype):
if inf_as_na and is_categorical_dtype(dtype):
result = libmissing.isnaobj_old(values.to_numpy())
else:
result = values.isna()
elif is_string_dtype(dtype):
result = _isna_string_dtype(values, dtype, inf_as_na=inf_as_na)
elif needs_i8_conversion(dtype):
# this is the NaT pattern
result = values.view("i8") == iNaT
else:
if inf_as_na:
result = ~np.isfinite(values)
else:
result = np.isnan(values)
# box
if isinstance(obj, ABCSeries):
result = obj._constructor(result, index=obj.index, name=obj.name, copy=False)
return result
def _isna_string_dtype(
values: np.ndarray, dtype: np.dtype, inf_as_na: bool
) -> np.ndarray:
# Working around NumPy ticket 1542
shape = values.shape
if is_string_like_dtype(dtype):
result = np.zeros(values.shape, dtype=bool)
else:
result = np.empty(shape, dtype=bool)
if inf_as_na:
vec = libmissing.isnaobj_old(values.ravel())
else:
vec = libmissing.isnaobj(values.ravel())
result[...] = vec.reshape(shape)
return result
def notna(obj):
"""
Detect non-missing values for an array-like object.
This function takes a scalar or array-like object and indicates
whether values are valid (not missing, which is ``NaN`` in numeric
arrays, ``None`` or ``NaN`` in object arrays, ``NaT`` in datetimelike).
Parameters
----------
obj : array-like or object value
Object to check for *not* null or *non*-missing values.
Returns
-------
bool or array-like of bool
For scalar input, returns a scalar boolean.
For array input, returns an array of boolean indicating whether each
corresponding element is valid.
See Also
--------
isna : Boolean inverse of pandas.notna.
Series.notna : Detect valid values in a Series.
DataFrame.notna : Detect valid values in a DataFrame.
Index.notna : Detect valid values in an Index.
Examples
--------
Scalar arguments (including strings) result in a scalar boolean.
>>> pd.notna('dog')
True
>>> pd.notna(pd.NA)
False
>>> pd.notna(np.nan)
False
ndarrays result in an ndarray of booleans.
>>> array = np.array([[1, np.nan, 3], [4, 5, np.nan]])
>>> array
array([[ 1., nan, 3.],
[ 4., 5., nan]])
>>> pd.notna(array)
array([[ True, False, True],
[ True, True, False]])
For indexes, an ndarray of booleans is returned.
>>> index = pd.DatetimeIndex(["2017-07-05", "2017-07-06", None,
... "2017-07-08"])
>>> index
DatetimeIndex(['2017-07-05', '2017-07-06', 'NaT', '2017-07-08'],
dtype='datetime64[ns]', freq=None)
>>> pd.notna(index)
array([ True, True, False, True])
For Series and DataFrame, the same type is returned, containing booleans.
>>> df = pd.DataFrame([['ant', 'bee', 'cat'], ['dog', None, 'fly']])
>>> df
0 1 2
0 ant bee cat
1 dog None fly
>>> pd.notna(df)
0 1 2
0 True True True
1 True False True
>>> pd.notna(df[1])
0 True
1 False
Name: 1, dtype: bool
"""
res = isna(obj)
if is_scalar(res):
return not res
return ~res
notnull = notna
def isna_compat(arr, fill_value=np.nan) -> bool:
"""
Parameters
----------
arr: a numpy array
fill_value: fill value, default to np.nan
Returns
-------
True if we can fill using this fill_value
"""
dtype = arr.dtype
if isna(fill_value):
return not (is_bool_dtype(dtype) or is_integer_dtype(dtype))
return True
def array_equivalent(
left, right, strict_nan: bool = False, dtype_equal: bool = False
) -> bool:
"""
True if two arrays, left and right, have equal non-NaN elements, and NaNs
in corresponding locations. False otherwise. It is assumed that left and
right are NumPy arrays of the same dtype. The behavior of this function
(particularly with respect to NaNs) is not defined if the dtypes are
different.
Parameters
----------
left, right : ndarrays
strict_nan : bool, default False
If True, consider NaN and None to be different.
dtype_equal : bool, default False
Whether `left` and `right` are known to have the same dtype
according to `is_dtype_equal`. Some methods like `BlockManager.equals`.
require that the dtypes match. Setting this to ``True`` can improve
performance, but will give different results for arrays that are
equal but different dtypes.
Returns
-------
b : bool
Returns True if the arrays are equivalent.
Examples
--------
>>> array_equivalent(
... np.array([1, 2, np.nan]),
... np.array([1, 2, np.nan]))
True
>>> array_equivalent(
... np.array([1, np.nan, 2]),
... np.array([1, 2, np.nan]))
False
"""
left, right = np.asarray(left), np.asarray(right)
# shape compat
if left.shape != right.shape:
return False
if dtype_equal:
# fastpath when we require that the dtypes match (Block.equals)
if is_float_dtype(left.dtype) or is_complex_dtype(left.dtype):
return _array_equivalent_float(left, right)
elif is_datetimelike_v_numeric(left.dtype, right.dtype):
return False
elif needs_i8_conversion(left.dtype):
return _array_equivalent_datetimelike(left, right)
elif is_string_dtype(left.dtype):
# TODO: fastpath for pandas' StringDtype
return _array_equivalent_object(left, right, strict_nan)
else:
return np.array_equal(left, right)
# Slow path when we allow comparing different dtypes.
# Object arrays can contain None, NaN and NaT.
# string dtypes must be come to this path for NumPy 1.7.1 compat
if is_string_dtype(left.dtype) or is_string_dtype(right.dtype):
return _array_equivalent_object(left, right, strict_nan)
# NaNs can occur in float and complex arrays.
if is_float_dtype(left.dtype) or is_complex_dtype(left.dtype):
if not (np.prod(left.shape) and np.prod(right.shape)):
return True
return ((left == right) | (isna(left) & isna(right))).all()
elif is_datetimelike_v_numeric(left, right):
# GH#29553 avoid numpy deprecation warning
return False
elif needs_i8_conversion(left.dtype) or needs_i8_conversion(right.dtype):
# datetime64, timedelta64, Period
if not is_dtype_equal(left.dtype, right.dtype):
return False
left = left.view("i8")
right = right.view("i8")
# if we have structured dtypes, compare first
if left.dtype.type is np.void or right.dtype.type is np.void:
if left.dtype != right.dtype:
return False
return np.array_equal(left, right)
def _array_equivalent_float(left, right):
return ((left == right) | (np.isnan(left) & np.isnan(right))).all()
def _array_equivalent_datetimelike(left, right):
return np.array_equal(left.view("i8"), right.view("i8"))
def _array_equivalent_object(left, right, strict_nan):
if not strict_nan:
# isna considers NaN and None to be equivalent.
return lib.array_equivalent_object(
ensure_object(left.ravel()), ensure_object(right.ravel())
)
for left_value, right_value in zip(left, right):
if left_value is NaT and right_value is not NaT:
return False
elif left_value is libmissing.NA and right_value is not libmissing.NA:
return False
elif isinstance(left_value, float) and np.isnan(left_value):
if not isinstance(right_value, float) or not np.isnan(right_value):
return False
else:
try:
if np.any(np.asarray(left_value != right_value)):
return False
except TypeError as err:
if "Cannot compare tz-naive" in str(err):
# tzawareness compat failure, see GH#28507
return False
elif "boolean value of NA is ambiguous" in str(err):
return False
raise
return True
def array_equals(left: ArrayLike, right: ArrayLike) -> bool:
"""
ExtensionArray-compatible implementation of array_equivalent.
"""
if not is_dtype_equal(left.dtype, right.dtype):
return False
elif isinstance(left, ABCExtensionArray):
return left.equals(right)
else:
return array_equivalent(left, right, dtype_equal=True)
def infer_fill_value(val):
"""
infer the fill value for the nan/NaT from the provided
scalar/ndarray/list-like if we are a NaT, return the correct dtyped
element to provide proper block construction
"""
if not is_list_like(val):
val = [val]
val = np.array(val, copy=False)
if needs_i8_conversion(val.dtype):
return np.array("NaT", dtype=val.dtype)
elif is_object_dtype(val.dtype):
dtype = lib.infer_dtype(ensure_object(val), skipna=False)
if dtype in ["datetime", "datetime64"]:
return np.array("NaT", dtype=DT64NS_DTYPE)
elif dtype in ["timedelta", "timedelta64"]:
return np.array("NaT", dtype=TD64NS_DTYPE)
return np.nan
def maybe_fill(arr, fill_value=np.nan):
"""
if we have a compatible fill_value and arr dtype, then fill
"""
if isna_compat(arr, fill_value):
arr.fill(fill_value)
return arr
def na_value_for_dtype(dtype, compat: bool = True):
"""
Return a dtype compat na value
Parameters
----------
dtype : string / dtype
compat : bool, default True
Returns
-------
np.dtype or a pandas dtype
Examples
--------
>>> na_value_for_dtype(np.dtype('int64'))
0
>>> na_value_for_dtype(np.dtype('int64'), compat=False)
nan
>>> na_value_for_dtype(np.dtype('float64'))
nan
>>> na_value_for_dtype(np.dtype('bool'))
False
>>> na_value_for_dtype(np.dtype('datetime64[ns]'))
NaT
"""
dtype = pandas_dtype(dtype)
if is_extension_array_dtype(dtype):
return dtype.na_value
if needs_i8_conversion(dtype):
return NaT
elif is_float_dtype(dtype):
return np.nan
elif is_integer_dtype(dtype):
if compat:
return 0
return np.nan
elif is_bool_dtype(dtype):
if compat:
return False
return np.nan
return np.nan
def remove_na_arraylike(arr):
"""
Return array-like containing only true/non-NaN values, possibly empty.
"""
if is_extension_array_dtype(arr):
return arr[notna(arr)]
else:
return arr[notna(np.asarray(arr))]
def is_valid_nat_for_dtype(obj, dtype: DtypeObj) -> bool:
"""
isna check that excludes incompatible dtypes
Parameters
----------
obj : object
dtype : np.datetime64, np.timedelta64, DatetimeTZDtype, or PeriodDtype
Returns
-------
bool
"""
if not lib.is_scalar(obj) or not isna(obj):
return False
if dtype.kind == "M":
return not isinstance(obj, np.timedelta64)
if dtype.kind == "m":
return not isinstance(obj, np.datetime64)
if dtype.kind in ["i", "u", "f", "c"]:
# Numeric
return obj is not NaT and not isinstance(obj, (np.datetime64, np.timedelta64))
# must be PeriodDType
return not isinstance(obj, (np.datetime64, np.timedelta64))
def isna_all(arr: ArrayLike) -> bool:
"""
Optimized equivalent to isna(arr).all()
"""
total_len = len(arr)
# Usually it's enough to check but a small fraction of values to see if
# a block is NOT null, chunks should help in such cases.
# parameters 1000 and 40 were chosen arbitrarily
chunk_len = max(total_len // 40, 1000)
dtype = arr.dtype
if dtype.kind == "f":
checker = nan_checker
elif dtype.kind in ["m", "M"] or dtype.type is Period:
checker = lambda x: np.asarray(x.view("i8")) == iNaT
else:
checker = lambda x: _isna_ndarraylike(x, inf_as_na=INF_AS_NA)
for i in range(0, total_len, chunk_len):
if not checker(arr[i : i + chunk_len]).all():
return False
return True