import pytest import numpy as np from numpy import arange, add, array, eye, copy, sqrt from numpy.testing import (assert_equal, assert_array_equal, assert_array_almost_equal, assert_allclose) from pytest import raises as assert_raises from scipy.fft import fft from scipy.special import comb from scipy.linalg import (toeplitz, hankel, circulant, hadamard, leslie, dft, companion, tri, triu, tril, kron, block_diag, helmert, hilbert, invhilbert, pascal, invpascal, fiedler, fiedler_companion, eigvals, convolution_matrix) from numpy.linalg import cond def get_mat(n): data = arange(n) data = add.outer(data, data) return data class TestTri(object): def test_basic(self): assert_equal(tri(4), array([[1, 0, 0, 0], [1, 1, 0, 0], [1, 1, 1, 0], [1, 1, 1, 1]])) assert_equal(tri(4, dtype='f'), array([[1, 0, 0, 0], [1, 1, 0, 0], [1, 1, 1, 0], [1, 1, 1, 1]], 'f')) def test_diag(self): assert_equal(tri(4, k=1), array([[1, 1, 0, 0], [1, 1, 1, 0], [1, 1, 1, 1], [1, 1, 1, 1]])) assert_equal(tri(4, k=-1), array([[0, 0, 0, 0], [1, 0, 0, 0], [1, 1, 0, 0], [1, 1, 1, 0]])) def test_2d(self): assert_equal(tri(4, 3), array([[1, 0, 0], [1, 1, 0], [1, 1, 1], [1, 1, 1]])) assert_equal(tri(3, 4), array([[1, 0, 0, 0], [1, 1, 0, 0], [1, 1, 1, 0]])) def test_diag2d(self): assert_equal(tri(3, 4, k=2), array([[1, 1, 1, 0], [1, 1, 1, 1], [1, 1, 1, 1]])) assert_equal(tri(4, 3, k=-2), array([[0, 0, 0], [0, 0, 0], [1, 0, 0], [1, 1, 0]])) class TestTril(object): def test_basic(self): a = (100*get_mat(5)).astype('l') b = a.copy() for k in range(5): for l in range(k+1, 5): b[k, l] = 0 assert_equal(tril(a), b) def test_diag(self): a = (100*get_mat(5)).astype('f') b = a.copy() for k in range(5): for l in range(k+3, 5): b[k, l] = 0 assert_equal(tril(a, k=2), b) b = a.copy() for k in range(5): for l in range(max((k-1, 0)), 5): b[k, l] = 0 assert_equal(tril(a, k=-2), b) class TestTriu(object): def test_basic(self): a = (100*get_mat(5)).astype('l') b = a.copy() for k in range(5): for l in range(k+1, 5): b[l, k] = 0 assert_equal(triu(a), b) def test_diag(self): a = (100*get_mat(5)).astype('f') b = a.copy() for k in range(5): for l in range(max((k-1, 0)), 5): b[l, k] = 0 assert_equal(triu(a, k=2), b) b = a.copy() for k in range(5): for l in range(k+3, 5): b[l, k] = 0 assert_equal(triu(a, k=-2), b) class TestToeplitz(object): def test_basic(self): y = toeplitz([1, 2, 3]) assert_array_equal(y, [[1, 2, 3], [2, 1, 2], [3, 2, 1]]) y = toeplitz([1, 2, 3], [1, 4, 5]) assert_array_equal(y, [[1, 4, 5], [2, 1, 4], [3, 2, 1]]) def test_complex_01(self): data = (1.0 + arange(3.0)) * (1.0 + 1.0j) x = copy(data) t = toeplitz(x) # Calling toeplitz should not change x. assert_array_equal(x, data) # According to the docstring, x should be the first column of t. col0 = t[:, 0] assert_array_equal(col0, data) assert_array_equal(t[0, 1:], data[1:].conj()) def test_scalar_00(self): """Scalar arguments still produce a 2D array.""" t = toeplitz(10) assert_array_equal(t, [[10]]) t = toeplitz(10, 20) assert_array_equal(t, [[10]]) def test_scalar_01(self): c = array([1, 2, 3]) t = toeplitz(c, 1) assert_array_equal(t, [[1], [2], [3]]) def test_scalar_02(self): c = array([1, 2, 3]) t = toeplitz(c, array(1)) assert_array_equal(t, [[1], [2], [3]]) def test_scalar_03(self): c = array([1, 2, 3]) t = toeplitz(c, array([1])) assert_array_equal(t, [[1], [2], [3]]) def test_scalar_04(self): r = array([10, 2, 3]) t = toeplitz(1, r) assert_array_equal(t, [[1, 2, 3]]) class TestHankel(object): def test_basic(self): y = hankel([1, 2, 3]) assert_array_equal(y, [[1, 2, 3], [2, 3, 0], [3, 0, 0]]) y = hankel([1, 2, 3], [3, 4, 5]) assert_array_equal(y, [[1, 2, 3], [2, 3, 4], [3, 4, 5]]) class TestCirculant(object): def test_basic(self): y = circulant([1, 2, 3]) assert_array_equal(y, [[1, 3, 2], [2, 1, 3], [3, 2, 1]]) class TestHadamard(object): def test_basic(self): y = hadamard(1) assert_array_equal(y, [[1]]) y = hadamard(2, dtype=float) assert_array_equal(y, [[1.0, 1.0], [1.0, -1.0]]) y = hadamard(4) assert_array_equal(y, [[1, 1, 1, 1], [1, -1, 1, -1], [1, 1, -1, -1], [1, -1, -1, 1]]) assert_raises(ValueError, hadamard, 0) assert_raises(ValueError, hadamard, 5) class TestLeslie(object): def test_bad_shapes(self): assert_raises(ValueError, leslie, [[1, 1], [2, 2]], [3, 4, 5]) assert_raises(ValueError, leslie, [3, 4, 5], [[1, 1], [2, 2]]) assert_raises(ValueError, leslie, [1, 2], [1, 2]) assert_raises(ValueError, leslie, [1], []) def test_basic(self): a = leslie([1, 2, 3], [0.25, 0.5]) expected = array([[1.0, 2.0, 3.0], [0.25, 0.0, 0.0], [0.0, 0.5, 0.0]]) assert_array_equal(a, expected) class TestCompanion(object): def test_bad_shapes(self): assert_raises(ValueError, companion, [[1, 1], [2, 2]]) assert_raises(ValueError, companion, [0, 4, 5]) assert_raises(ValueError, companion, [1]) assert_raises(ValueError, companion, []) def test_basic(self): c = companion([1, 2, 3]) expected = array([ [-2.0, -3.0], [1.0, 0.0]]) assert_array_equal(c, expected) c = companion([2.0, 5.0, -10.0]) expected = array([ [-2.5, 5.0], [1.0, 0.0]]) assert_array_equal(c, expected) class TestBlockDiag: def test_basic(self): x = block_diag(eye(2), [[1, 2], [3, 4], [5, 6]], [[1, 2, 3]]) assert_array_equal(x, [[1, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0], [0, 0, 1, 2, 0, 0, 0], [0, 0, 3, 4, 0, 0, 0], [0, 0, 5, 6, 0, 0, 0], [0, 0, 0, 0, 1, 2, 3]]) def test_dtype(self): x = block_diag([[1.5]]) assert_equal(x.dtype, float) x = block_diag([[True]]) assert_equal(x.dtype, bool) def test_mixed_dtypes(self): actual = block_diag([[1]], [[1j]]) desired = np.array([[1, 0], [0, 1j]]) assert_array_equal(actual, desired) def test_scalar_and_1d_args(self): a = block_diag(1) assert_equal(a.shape, (1, 1)) assert_array_equal(a, [[1]]) a = block_diag([2, 3], 4) assert_array_equal(a, [[2, 3, 0], [0, 0, 4]]) def test_bad_arg(self): assert_raises(ValueError, block_diag, [[[1]]]) def test_no_args(self): a = block_diag() assert_equal(a.ndim, 2) assert_equal(a.nbytes, 0) def test_empty_matrix_arg(self): # regression test for gh-4596: check the shape of the result # for empty matrix inputs. Empty matrices are no longer ignored # (gh-4908) it is viewed as a shape (1, 0) matrix. a = block_diag([[1, 0], [0, 1]], [], [[2, 3], [4, 5], [6, 7]]) assert_array_equal(a, [[1, 0, 0, 0], [0, 1, 0, 0], [0, 0, 0, 0], [0, 0, 2, 3], [0, 0, 4, 5], [0, 0, 6, 7]]) def test_zerosized_matrix_arg(self): # test for gh-4908: check the shape of the result for # zero-sized matrix inputs, i.e. matrices with shape (0,n) or (n,0). # note that [[]] takes shape (1,0) a = block_diag([[1, 0], [0, 1]], [[]], [[2, 3], [4, 5], [6, 7]], np.zeros([0, 2], dtype='int32')) assert_array_equal(a, [[1, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0], [0, 0, 2, 3, 0, 0], [0, 0, 4, 5, 0, 0], [0, 0, 6, 7, 0, 0]]) class TestKron: def test_basic(self): a = kron(array([[1, 2], [3, 4]]), array([[1, 1, 1]])) assert_array_equal(a, array([[1, 1, 1, 2, 2, 2], [3, 3, 3, 4, 4, 4]])) m1 = array([[1, 2], [3, 4]]) m2 = array([[10], [11]]) a = kron(m1, m2) expected = array([[10, 20], [11, 22], [30, 40], [33, 44]]) assert_array_equal(a, expected) class TestHelmert(object): def test_orthogonality(self): for n in range(1, 7): H = helmert(n, full=True) Id = np.eye(n) assert_allclose(H.dot(H.T), Id, atol=1e-12) assert_allclose(H.T.dot(H), Id, atol=1e-12) def test_subspace(self): for n in range(2, 7): H_full = helmert(n, full=True) H_partial = helmert(n) for U in H_full[1:, :].T, H_partial.T: C = np.eye(n) - np.full((n, n), 1 / n) assert_allclose(U.dot(U.T), C) assert_allclose(U.T.dot(U), np.eye(n-1), atol=1e-12) class TestHilbert(object): def test_basic(self): h3 = array([[1.0, 1/2., 1/3.], [1/2., 1/3., 1/4.], [1/3., 1/4., 1/5.]]) assert_array_almost_equal(hilbert(3), h3) assert_array_equal(hilbert(1), [[1.0]]) h0 = hilbert(0) assert_equal(h0.shape, (0, 0)) class TestInvHilbert(object): def test_basic(self): invh1 = array([[1]]) assert_array_equal(invhilbert(1, exact=True), invh1) assert_array_equal(invhilbert(1), invh1) invh2 = array([[4, -6], [-6, 12]]) assert_array_equal(invhilbert(2, exact=True), invh2) assert_array_almost_equal(invhilbert(2), invh2) invh3 = array([[9, -36, 30], [-36, 192, -180], [30, -180, 180]]) assert_array_equal(invhilbert(3, exact=True), invh3) assert_array_almost_equal(invhilbert(3), invh3) invh4 = array([[16, -120, 240, -140], [-120, 1200, -2700, 1680], [240, -2700, 6480, -4200], [-140, 1680, -4200, 2800]]) assert_array_equal(invhilbert(4, exact=True), invh4) assert_array_almost_equal(invhilbert(4), invh4) invh5 = array([[25, -300, 1050, -1400, 630], [-300, 4800, -18900, 26880, -12600], [1050, -18900, 79380, -117600, 56700], [-1400, 26880, -117600, 179200, -88200], [630, -12600, 56700, -88200, 44100]]) assert_array_equal(invhilbert(5, exact=True), invh5) assert_array_almost_equal(invhilbert(5), invh5) invh17 = array([ [289, -41616, 1976760, -46124400, 629598060, -5540462928, 33374693352, -143034400080, 446982500250, -1033026222800, 1774926873720, -2258997839280, 2099709530100, -1384423866000, 613101997800, -163493866080, 19835652870], [-41616, 7990272, -426980160, 10627061760, -151103534400, 1367702848512, -8410422724704, 36616806420480, -115857864064800, 270465047424000, -468580694662080, 600545887119360, -561522320049600, 372133135180800, -165537539406000, 44316454993920, -5395297580640], [1976760, -426980160, 24337869120, -630981792000, 9228108708000, -85267724461920, 532660105897920, -2348052711713280, 7504429831470000, -17664748409880000, 30818191841236800, -39732544853164800, 37341234283298400, -24857330514030000, 11100752642520000, -2982128117299200, 364182586693200], [-46124400, 10627061760, -630981792000, 16826181120000, -251209625940000, 2358021022156800, -14914482965141760, 66409571644416000, -214015221119700000, 507295338950400000, -890303319857952000, 1153715376477081600, -1089119333262870000, 727848632044800000, -326170262829600000, 87894302404608000, -10763618673376800], [629598060, -151103534400, 9228108708000, -251209625940000, 3810012660090000, -36210360321495360, 231343968720664800, -1038687206500944000, 3370739732635275000, -8037460526495400000, 14178080368737885600, -18454939322943942000, 17489975175339030000, -11728977435138600000, 5272370630081100000, -1424711708039692800, 174908803442373000], [-5540462928, 1367702848512, -85267724461920, 2358021022156800, -36210360321495360, 347619459086355456, -2239409617216035264, 10124803292907663360, -33052510749726468000, 79217210949138662400, -140362995650505067440, 183420385176741672960, -174433352415381259200, 117339159519533952000, -52892422160973595200, 14328529177999196160, -1763080738699119840], [33374693352, -8410422724704, 532660105897920, -14914482965141760, 231343968720664800, -2239409617216035264, 14527452132196331328, -66072377044391477760, 216799987176909536400, -521925895055522958000, 928414062734059661760, -1217424500995626443520, 1161358898976091015200, -783401860847777371200, 354015418167362952000, -96120549902411274240, 11851820521255194480], [-143034400080, 36616806420480, -2348052711713280, 66409571644416000, -1038687206500944000, 10124803292907663360, -66072377044391477760, 302045152202932469760, -995510145200094810000, 2405996923185123840000, -4294704507885446054400, 5649058909023744614400, -5403874060541811254400, 3654352703663101440000, -1655137020003255360000, 450325202737117593600, -55630994283442749600], [446982500250, -115857864064800, 7504429831470000, -214015221119700000, 3370739732635275000, -33052510749726468000, 216799987176909536400, -995510145200094810000, 3293967392206196062500, -7988661659013106500000, 14303908928401362270000, -18866974090684772052000, 18093328327706957325000, -12263364009096700500000, 5565847995255512250000, -1517208935002984080000, 187754605706619279900], [-1033026222800, 270465047424000, -17664748409880000, 507295338950400000, -8037460526495400000, 79217210949138662400, -521925895055522958000, 2405996923185123840000, -7988661659013106500000, 19434404971634224000000, -34894474126569249192000, 46141453390504792320000, -44349976506971935800000, 30121928988527376000000, -13697025107665828500000, 3740200989399948902400, -463591619028689580000], [1774926873720, -468580694662080, 30818191841236800, -890303319857952000, 14178080368737885600, -140362995650505067440, 928414062734059661760, -4294704507885446054400, 14303908928401362270000, -34894474126569249192000, 62810053427824648545600, -83243376594051600326400, 80177044485212743068000, -54558343880470209780000, 24851882355348879230400, -6797096028813368678400, 843736746632215035600], [-2258997839280, 600545887119360, -39732544853164800, 1153715376477081600, -18454939322943942000, 183420385176741672960, -1217424500995626443520, 5649058909023744614400, -18866974090684772052000, 46141453390504792320000, -83243376594051600326400, 110552468520163390156800, -106681852579497947388000, 72720410752415168870400, -33177973900974346080000, 9087761081682520473600, -1129631016152221783200], [2099709530100, -561522320049600, 37341234283298400, -1089119333262870000, 17489975175339030000, -174433352415381259200, 1161358898976091015200, -5403874060541811254400, 18093328327706957325000, -44349976506971935800000, 80177044485212743068000, -106681852579497947388000, 103125790826848015808400, -70409051543137015800000, 32171029219823375700000, -8824053728865840192000, 1098252376814660067000], [-1384423866000, 372133135180800, -24857330514030000, 727848632044800000, -11728977435138600000, 117339159519533952000, -783401860847777371200, 3654352703663101440000, -12263364009096700500000, 30121928988527376000000, -54558343880470209780000, 72720410752415168870400, -70409051543137015800000, 48142941226076592000000, -22027500987368499000000, 6049545098753157120000, -753830033789944188000], [613101997800, -165537539406000, 11100752642520000, -326170262829600000, 5272370630081100000, -52892422160973595200, 354015418167362952000, -1655137020003255360000, 5565847995255512250000, -13697025107665828500000, 24851882355348879230400, -33177973900974346080000, 32171029219823375700000, -22027500987368499000000, 10091416708498869000000, -2774765838662800128000, 346146444087219270000], [-163493866080, 44316454993920, -2982128117299200, 87894302404608000, -1424711708039692800, 14328529177999196160, -96120549902411274240, 450325202737117593600, -1517208935002984080000, 3740200989399948902400, -6797096028813368678400, 9087761081682520473600, -8824053728865840192000, 6049545098753157120000, -2774765838662800128000, 763806510427609497600, -95382575704033754400], [19835652870, -5395297580640, 364182586693200, -10763618673376800, 174908803442373000, -1763080738699119840, 11851820521255194480, -55630994283442749600, 187754605706619279900, -463591619028689580000, 843736746632215035600, -1129631016152221783200, 1098252376814660067000, -753830033789944188000, 346146444087219270000, -95382575704033754400, 11922821963004219300] ]) assert_array_equal(invhilbert(17, exact=True), invh17) assert_allclose(invhilbert(17), invh17.astype(float), rtol=1e-12) def test_inverse(self): for n in range(1, 10): a = hilbert(n) b = invhilbert(n) # The Hilbert matrix is increasingly badly conditioned, # so take that into account in the test c = cond(a) assert_allclose(a.dot(b), eye(n), atol=1e-15*c, rtol=1e-15*c) class TestPascal(object): cases = [ (1, array([[1]]), array([[1]])), (2, array([[1, 1], [1, 2]]), array([[1, 0], [1, 1]])), (3, array([[1, 1, 1], [1, 2, 3], [1, 3, 6]]), array([[1, 0, 0], [1, 1, 0], [1, 2, 1]])), (4, array([[1, 1, 1, 1], [1, 2, 3, 4], [1, 3, 6, 10], [1, 4, 10, 20]]), array([[1, 0, 0, 0], [1, 1, 0, 0], [1, 2, 1, 0], [1, 3, 3, 1]])), ] def check_case(self, n, sym, low): assert_array_equal(pascal(n), sym) assert_array_equal(pascal(n, kind='lower'), low) assert_array_equal(pascal(n, kind='upper'), low.T) assert_array_almost_equal(pascal(n, exact=False), sym) assert_array_almost_equal(pascal(n, exact=False, kind='lower'), low) assert_array_almost_equal(pascal(n, exact=False, kind='upper'), low.T) def test_cases(self): for n, sym, low in self.cases: self.check_case(n, sym, low) def test_big(self): p = pascal(50) assert_equal(p[-1, -1], comb(98, 49, exact=True)) def test_threshold(self): # Regression test. An early version of `pascal` returned an # array of type np.uint64 for n=35, but that data type is too small # to hold p[-1, -1]. The second assert_equal below would fail # because p[-1, -1] overflowed. p = pascal(34) assert_equal(2*p.item(-1, -2), p.item(-1, -1), err_msg="n = 34") p = pascal(35) assert_equal(2*p.item(-1, -2), p.item(-1, -1), err_msg="n = 35") def test_invpascal(): def check_invpascal(n, kind, exact): ip = invpascal(n, kind=kind, exact=exact) p = pascal(n, kind=kind, exact=exact) # Matrix-multiply ip and p, and check that we get the identity matrix. # We can't use the simple expression e = ip.dot(p), because when # n < 35 and exact is True, p.dtype is np.uint64 and ip.dtype is # np.int64. The product of those dtypes is np.float64, which loses # precision when n is greater than 18. Instead we'll cast both to # object arrays, and then multiply. e = ip.astype(object).dot(p.astype(object)) assert_array_equal(e, eye(n), err_msg="n=%d kind=%r exact=%r" % (n, kind, exact)) kinds = ['symmetric', 'lower', 'upper'] ns = [1, 2, 5, 18] for n in ns: for kind in kinds: for exact in [True, False]: check_invpascal(n, kind, exact) ns = [19, 34, 35, 50] for n in ns: for kind in kinds: check_invpascal(n, kind, True) def test_dft(): m = dft(2) expected = array([[1.0, 1.0], [1.0, -1.0]]) assert_array_almost_equal(m, expected) m = dft(2, scale='n') assert_array_almost_equal(m, expected/2.0) m = dft(2, scale='sqrtn') assert_array_almost_equal(m, expected/sqrt(2.0)) x = array([0, 1, 2, 3, 4, 5, 0, 1]) m = dft(8) mx = m.dot(x) fx = fft(x) assert_array_almost_equal(mx, fx) def test_fiedler(): f = fiedler([]) assert_equal(f.size, 0) f = fiedler([123.]) assert_array_equal(f, np.array([[0.]])) f = fiedler(np.arange(1, 7)) des = np.array([[0, 1, 2, 3, 4, 5], [1, 0, 1, 2, 3, 4], [2, 1, 0, 1, 2, 3], [3, 2, 1, 0, 1, 2], [4, 3, 2, 1, 0, 1], [5, 4, 3, 2, 1, 0]]) assert_array_equal(f, des) def test_fiedler_companion(): fc = fiedler_companion([]) assert_equal(fc.size, 0) fc = fiedler_companion([1.]) assert_equal(fc.size, 0) fc = fiedler_companion([1., 2.]) assert_array_equal(fc, np.array([[-2.]])) fc = fiedler_companion([1e-12, 2., 3.]) assert_array_almost_equal(fc, companion([1e-12, 2., 3.])) with assert_raises(ValueError): fiedler_companion([0, 1, 2]) fc = fiedler_companion([1., -16., 86., -176., 105.]) assert_array_almost_equal(eigvals(fc), np.array([7., 5., 3., 1.])) class TestConvolutionMatrix: """ Test convolution_matrix vs. numpy.convolve for various parameters. """ def create_vector(self, n, cpx): """Make a complex or real test vector of length n.""" x = np.linspace(-2.5, 2.2, n) if cpx: x = x + 1j*np.linspace(-1.5, 3.1, n) return x def test_bad_n(self): # n must be a positive integer with pytest.raises(ValueError, match='n must be a positive integer'): convolution_matrix([1, 2, 3], 0) def test_bad_first_arg(self): # first arg must be a 1d array, otherwise ValueError with pytest.raises(ValueError, match='one-dimensional'): convolution_matrix(1, 4) def test_empty_first_arg(self): # first arg must have at least one value with pytest.raises(ValueError, match=r'len\(a\)'): convolution_matrix([], 4) def test_bad_mode(self): # mode must be in ('full', 'valid', 'same') with pytest.raises(ValueError, match='mode.*must be one of'): convolution_matrix((1, 1), 4, mode='invalid argument') @pytest.mark.parametrize('cpx', [False, True]) @pytest.mark.parametrize('na', [1, 2, 9]) @pytest.mark.parametrize('nv', [1, 2, 9]) @pytest.mark.parametrize('mode', [None, 'full', 'valid', 'same']) def test_against_numpy_convolve(self, cpx, na, nv, mode): a = self.create_vector(na, cpx) v = self.create_vector(nv, cpx) if mode is None: y1 = np.convolve(v, a) A = convolution_matrix(a, nv) else: y1 = np.convolve(v, a, mode) A = convolution_matrix(a, nv, mode) y2 = A @ v assert_array_almost_equal(y1, y2)