import numpy as np from numpy.testing import assert_equal from scipy.sparse.csgraph import reverse_cuthill_mckee, structural_rank from scipy.sparse import csc_matrix, csr_matrix, coo_matrix def test_graph_reverse_cuthill_mckee(): A = np.array([[1, 0, 0, 0, 1, 0, 0, 0], [0, 1, 1, 0, 0, 1, 0, 1], [0, 1, 1, 0, 1, 0, 0, 0], [0, 0, 0, 1, 0, 0, 1, 0], [1, 0, 1, 0, 1, 0, 0, 0], [0, 1, 0, 0, 0, 1, 0, 1], [0, 0, 0, 1, 0, 0, 1, 0], [0, 1, 0, 0, 0, 1, 0, 1]], dtype=int) graph = csr_matrix(A) perm = reverse_cuthill_mckee(graph) correct_perm = np.array([6, 3, 7, 5, 1, 2, 4, 0]) assert_equal(perm, correct_perm) # Test int64 indices input graph.indices = graph.indices.astype('int64') graph.indptr = graph.indptr.astype('int64') perm = reverse_cuthill_mckee(graph, True) assert_equal(perm, correct_perm) def test_graph_reverse_cuthill_mckee_ordering(): data = np.ones(63,dtype=int) rows = np.array([0, 0, 0, 0, 0, 1, 1, 1, 1, 2, 2, 2, 2, 3, 3, 3, 4, 4, 4, 4, 5, 5, 5, 5, 6, 6, 6, 7, 7, 7, 7, 8, 8, 8, 8, 9, 9, 9, 10, 10, 10, 10, 10, 11, 11, 11, 11, 12, 12, 12, 13, 13, 13, 13, 14, 14, 14, 14, 15, 15, 15, 15, 15]) cols = np.array([0, 2, 5, 8, 10, 1, 3, 9, 11, 0, 2, 7, 10, 1, 3, 11, 4, 6, 12, 14, 0, 7, 13, 15, 4, 6, 14, 2, 5, 7, 15, 0, 8, 10, 13, 1, 9, 11, 0, 2, 8, 10, 15, 1, 3, 9, 11, 4, 12, 14, 5, 8, 13, 15, 4, 6, 12, 14, 5, 7, 10, 13, 15]) graph = coo_matrix((data, (rows,cols))).tocsr() perm = reverse_cuthill_mckee(graph) correct_perm = np.array([12, 14, 4, 6, 10, 8, 2, 15, 0, 13, 7, 5, 9, 11, 1, 3]) assert_equal(perm, correct_perm) def test_graph_structural_rank(): # Test square matrix #1 A = csc_matrix([[1, 1, 0], [1, 0, 1], [0, 1, 0]]) assert_equal(structural_rank(A), 3) # Test square matrix #2 rows = np.array([0,0,0,0,0,1,1,2,2,3,3,3,3,3,3,4,4,5,5,6,6,7,7]) cols = np.array([0,1,2,3,4,2,5,2,6,0,1,3,5,6,7,4,5,5,6,2,6,2,4]) data = np.ones_like(rows) B = coo_matrix((data,(rows,cols)), shape=(8,8)) assert_equal(structural_rank(B), 6) #Test non-square matrix C = csc_matrix([[1, 0, 2, 0], [2, 0, 4, 0]]) assert_equal(structural_rank(C), 2) #Test tall matrix assert_equal(structural_rank(C.T), 2)