import pytest import numpy as np from sklearn.utils._testing import assert_allclose from sklearn.utils._cython_blas import _dot_memview from sklearn.utils._cython_blas import _asum_memview from sklearn.utils._cython_blas import _axpy_memview from sklearn.utils._cython_blas import _nrm2_memview from sklearn.utils._cython_blas import _copy_memview from sklearn.utils._cython_blas import _scal_memview from sklearn.utils._cython_blas import _rotg_memview from sklearn.utils._cython_blas import _rot_memview from sklearn.utils._cython_blas import _gemv_memview from sklearn.utils._cython_blas import _ger_memview from sklearn.utils._cython_blas import _gemm_memview from sklearn.utils._cython_blas import RowMajor, ColMajor from sklearn.utils._cython_blas import Trans, NoTrans def _numpy_to_cython(dtype): cython = pytest.importorskip("cython") if dtype == np.float32: return cython.float elif dtype == np.float64: return cython.double RTOL = {np.float32: 1e-6, np.float64: 1e-12} ORDER = {RowMajor: 'C', ColMajor: 'F'} def _no_op(x): return x @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_dot(dtype): dot = _dot_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) y = rng.random_sample(10).astype(dtype, copy=False) expected = x.dot(y) actual = dot(x, y) assert_allclose(actual, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_asum(dtype): asum = _asum_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) expected = np.abs(x).sum() actual = asum(x) assert_allclose(actual, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_axpy(dtype): axpy = _axpy_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) y = rng.random_sample(10).astype(dtype, copy=False) alpha = 2.5 expected = alpha * x + y axpy(alpha, x, y) assert_allclose(y, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_nrm2(dtype): nrm2 = _nrm2_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) expected = np.linalg.norm(x) actual = nrm2(x) assert_allclose(actual, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_copy(dtype): copy = _copy_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) y = np.empty_like(x) expected = x.copy() copy(x, y) assert_allclose(y, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_scal(dtype): scal = _scal_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) alpha = 2.5 expected = alpha * x scal(alpha, x) assert_allclose(x, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_rotg(dtype): rotg = _rotg_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) a = dtype(rng.randn()) b = dtype(rng.randn()) c, s = 0.0, 0.0 def expected_rotg(a, b): roe = a if abs(a) > abs(b) else b if a == 0 and b == 0: c, s, r, z = (1, 0, 0, 0) else: r = np.sqrt(a**2 + b**2) * (1 if roe >= 0 else -1) c, s = a/r, b/r z = s if roe == a else (1 if c == 0 else 1 / c) return r, z, c, s expected = expected_rotg(a, b) actual = rotg(a, b, c, s) assert_allclose(actual, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) def test_rot(dtype): rot = _rot_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) y = rng.random_sample(10).astype(dtype, copy=False) c = dtype(rng.randn()) s = dtype(rng.randn()) expected_x = c * x + s * y expected_y = c * y - s * x rot(x, y, c, s) assert_allclose(x, expected_x) assert_allclose(y, expected_y) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) @pytest.mark.parametrize("opA, transA", [(_no_op, NoTrans), (np.transpose, Trans)], ids=["NoTrans", "Trans"]) @pytest.mark.parametrize("order", [RowMajor, ColMajor], ids=["RowMajor", "ColMajor"]) def test_gemv(dtype, opA, transA, order): gemv = _gemv_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) A = np.asarray(opA(rng.random_sample((20, 10)).astype(dtype, copy=False)), order=ORDER[order]) x = rng.random_sample(10).astype(dtype, copy=False) y = rng.random_sample(20).astype(dtype, copy=False) alpha, beta = 2.5, -0.5 expected = alpha * opA(A).dot(x) + beta * y gemv(transA, alpha, A, x, beta, y) assert_allclose(y, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) @pytest.mark.parametrize("order", [RowMajor, ColMajor], ids=["RowMajor", "ColMajor"]) def test_ger(dtype, order): ger = _ger_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) x = rng.random_sample(10).astype(dtype, copy=False) y = rng.random_sample(20).astype(dtype, copy=False) A = np.asarray(rng.random_sample((10, 20)).astype(dtype, copy=False), order=ORDER[order]) alpha = 2.5 expected = alpha * np.outer(x, y) + A ger(alpha, x, y, A) assert_allclose(A, expected, rtol=RTOL[dtype]) @pytest.mark.parametrize("dtype", [np.float32, np.float64]) @pytest.mark.parametrize("opB, transB", [(_no_op, NoTrans), (np.transpose, Trans)], ids=["NoTrans", "Trans"]) @pytest.mark.parametrize("opA, transA", [(_no_op, NoTrans), (np.transpose, Trans)], ids=["NoTrans", "Trans"]) @pytest.mark.parametrize("order", [RowMajor, ColMajor], ids=["RowMajor", "ColMajor"]) def test_gemm(dtype, opA, transA, opB, transB, order): gemm = _gemm_memview[_numpy_to_cython(dtype)] rng = np.random.RandomState(0) A = np.asarray(opA(rng.random_sample((30, 10)).astype(dtype, copy=False)), order=ORDER[order]) B = np.asarray(opB(rng.random_sample((10, 20)).astype(dtype, copy=False)), order=ORDER[order]) C = np.asarray(rng.random_sample((30, 20)).astype(dtype, copy=False), order=ORDER[order]) alpha, beta = 2.5, -0.5 expected = alpha * opA(A).dot(opB(B)) + beta * C gemm(transA, transB, alpha, A, B, beta, C) assert_allclose(C, expected, rtol=RTOL[dtype])