projektAI/venv/Lib/site-packages/pandas/tests/series/methods/test_rank.py
2021-06-06 22:13:05 +02:00

564 lines
20 KiB
Python

from itertools import chain, product
import numpy as np
import pytest
from pandas._libs import iNaT
from pandas._libs.algos import Infinity, NegInfinity
import pandas.util._test_decorators as td
from pandas import NaT, Series, Timestamp, date_range
import pandas._testing as tm
from pandas.api.types import CategoricalDtype
class TestSeriesRank:
s = Series([1, 3, 4, 2, np.nan, 2, 1, 5, np.nan, 3])
results = {
"average": np.array([1.5, 5.5, 7.0, 3.5, np.nan, 3.5, 1.5, 8.0, np.nan, 5.5]),
"min": np.array([1, 5, 7, 3, np.nan, 3, 1, 8, np.nan, 5]),
"max": np.array([2, 6, 7, 4, np.nan, 4, 2, 8, np.nan, 6]),
"first": np.array([1, 5, 7, 3, np.nan, 4, 2, 8, np.nan, 6]),
"dense": np.array([1, 3, 4, 2, np.nan, 2, 1, 5, np.nan, 3]),
}
def test_rank(self, datetime_series):
pytest.importorskip("scipy.stats.special")
rankdata = pytest.importorskip("scipy.stats.rankdata")
datetime_series[::2] = np.nan
datetime_series[:10][::3] = 4.0
ranks = datetime_series.rank()
oranks = datetime_series.astype("O").rank()
tm.assert_series_equal(ranks, oranks)
mask = np.isnan(datetime_series)
filled = datetime_series.fillna(np.inf)
# rankdata returns a ndarray
exp = Series(rankdata(filled), index=filled.index, name="ts")
exp[mask] = np.nan
tm.assert_series_equal(ranks, exp)
iseries = Series(np.arange(5).repeat(2))
iranks = iseries.rank()
exp = iseries.astype(float).rank()
tm.assert_series_equal(iranks, exp)
iseries = Series(np.arange(5)) + 1.0
exp = iseries / 5.0
iranks = iseries.rank(pct=True)
tm.assert_series_equal(iranks, exp)
iseries = Series(np.repeat(1, 100))
exp = Series(np.repeat(0.505, 100))
iranks = iseries.rank(pct=True)
tm.assert_series_equal(iranks, exp)
iseries[1] = np.nan
exp = Series(np.repeat(50.0 / 99.0, 100))
exp[1] = np.nan
iranks = iseries.rank(pct=True)
tm.assert_series_equal(iranks, exp)
iseries = Series(np.arange(5)) + 1.0
iseries[4] = np.nan
exp = iseries / 4.0
iranks = iseries.rank(pct=True)
tm.assert_series_equal(iranks, exp)
iseries = Series(np.repeat(np.nan, 100))
exp = iseries.copy()
iranks = iseries.rank(pct=True)
tm.assert_series_equal(iranks, exp)
iseries = Series(np.arange(5)) + 1
iseries[4] = np.nan
exp = iseries / 4.0
iranks = iseries.rank(pct=True)
tm.assert_series_equal(iranks, exp)
rng = date_range("1/1/1990", periods=5)
iseries = Series(np.arange(5), rng) + 1
iseries.iloc[4] = np.nan
exp = iseries / 4.0
iranks = iseries.rank(pct=True)
tm.assert_series_equal(iranks, exp)
iseries = Series([1e-50, 1e-100, 1e-20, 1e-2, 1e-20 + 1e-30, 1e-1])
exp = Series([2, 1, 3, 5, 4, 6.0])
iranks = iseries.rank()
tm.assert_series_equal(iranks, exp)
# GH 5968
iseries = Series(["3 day", "1 day 10m", "-2 day", NaT], dtype="m8[ns]")
exp = Series([3, 2, 1, np.nan])
iranks = iseries.rank()
tm.assert_series_equal(iranks, exp)
values = np.array(
[-50, -1, -1e-20, -1e-25, -1e-50, 0, 1e-40, 1e-20, 1e-10, 2, 40],
dtype="float64",
)
random_order = np.random.permutation(len(values))
iseries = Series(values[random_order])
exp = Series(random_order + 1.0, dtype="float64")
iranks = iseries.rank()
tm.assert_series_equal(iranks, exp)
def test_rank_categorical(self):
# GH issue #15420 rank incorrectly orders ordered categories
# Test ascending/descending ranking for ordered categoricals
exp = Series([1.0, 2.0, 3.0, 4.0, 5.0, 6.0])
exp_desc = Series([6.0, 5.0, 4.0, 3.0, 2.0, 1.0])
ordered = Series(
["first", "second", "third", "fourth", "fifth", "sixth"]
).astype(
CategoricalDtype(
categories=["first", "second", "third", "fourth", "fifth", "sixth"],
ordered=True,
)
)
tm.assert_series_equal(ordered.rank(), exp)
tm.assert_series_equal(ordered.rank(ascending=False), exp_desc)
# Unordered categoricals should be ranked as objects
unordered = Series(
["first", "second", "third", "fourth", "fifth", "sixth"]
).astype(
CategoricalDtype(
categories=["first", "second", "third", "fourth", "fifth", "sixth"],
ordered=False,
)
)
exp_unordered = Series([2.0, 4.0, 6.0, 3.0, 1.0, 5.0])
res = unordered.rank()
tm.assert_series_equal(res, exp_unordered)
unordered1 = Series([1, 2, 3, 4, 5, 6]).astype(
CategoricalDtype([1, 2, 3, 4, 5, 6], False)
)
exp_unordered1 = Series([1.0, 2.0, 3.0, 4.0, 5.0, 6.0])
res1 = unordered1.rank()
tm.assert_series_equal(res1, exp_unordered1)
# Test na_option for rank data
na_ser = Series(
["first", "second", "third", "fourth", "fifth", "sixth", np.NaN]
).astype(
CategoricalDtype(
["first", "second", "third", "fourth", "fifth", "sixth", "seventh"],
True,
)
)
exp_top = Series([2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 1.0])
exp_bot = Series([1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0])
exp_keep = Series([1.0, 2.0, 3.0, 4.0, 5.0, 6.0, np.NaN])
tm.assert_series_equal(na_ser.rank(na_option="top"), exp_top)
tm.assert_series_equal(na_ser.rank(na_option="bottom"), exp_bot)
tm.assert_series_equal(na_ser.rank(na_option="keep"), exp_keep)
# Test na_option for rank data with ascending False
exp_top = Series([7.0, 6.0, 5.0, 4.0, 3.0, 2.0, 1.0])
exp_bot = Series([6.0, 5.0, 4.0, 3.0, 2.0, 1.0, 7.0])
exp_keep = Series([6.0, 5.0, 4.0, 3.0, 2.0, 1.0, np.NaN])
tm.assert_series_equal(na_ser.rank(na_option="top", ascending=False), exp_top)
tm.assert_series_equal(
na_ser.rank(na_option="bottom", ascending=False), exp_bot
)
tm.assert_series_equal(na_ser.rank(na_option="keep", ascending=False), exp_keep)
# Test invalid values for na_option
msg = "na_option must be one of 'keep', 'top', or 'bottom'"
with pytest.raises(ValueError, match=msg):
na_ser.rank(na_option="bad", ascending=False)
# invalid type
with pytest.raises(ValueError, match=msg):
na_ser.rank(na_option=True, ascending=False)
# Test with pct=True
na_ser = Series(["first", "second", "third", "fourth", np.NaN]).astype(
CategoricalDtype(["first", "second", "third", "fourth"], True)
)
exp_top = Series([0.4, 0.6, 0.8, 1.0, 0.2])
exp_bot = Series([0.2, 0.4, 0.6, 0.8, 1.0])
exp_keep = Series([0.25, 0.5, 0.75, 1.0, np.NaN])
tm.assert_series_equal(na_ser.rank(na_option="top", pct=True), exp_top)
tm.assert_series_equal(na_ser.rank(na_option="bottom", pct=True), exp_bot)
tm.assert_series_equal(na_ser.rank(na_option="keep", pct=True), exp_keep)
def test_rank_signature(self):
s = Series([0, 1])
s.rank(method="average")
msg = "No axis named average for object type Series"
with pytest.raises(ValueError, match=msg):
s.rank("average")
@pytest.mark.parametrize(
"contents,dtype",
[
(
[
-np.inf,
-50,
-1,
-1e-20,
-1e-25,
-1e-50,
0,
1e-40,
1e-20,
1e-10,
2,
40,
np.inf,
],
"float64",
),
(
[
-np.inf,
-50,
-1,
-1e-20,
-1e-25,
-1e-45,
0,
1e-40,
1e-20,
1e-10,
2,
40,
np.inf,
],
"float32",
),
([np.iinfo(np.uint8).min, 1, 2, 100, np.iinfo(np.uint8).max], "uint8"),
pytest.param(
[
np.iinfo(np.int64).min,
-100,
0,
1,
9999,
100000,
1e10,
np.iinfo(np.int64).max,
],
"int64",
marks=pytest.mark.xfail(
reason="iNaT is equivalent to minimum value of dtype"
"int64 pending issue GH#16674"
),
),
([NegInfinity(), "1", "A", "BA", "Ba", "C", Infinity()], "object"),
],
)
def test_rank_inf(self, contents, dtype):
dtype_na_map = {
"float64": np.nan,
"float32": np.nan,
"int64": iNaT,
"object": None,
}
# Insert nans at random positions if underlying dtype has missing
# value. Then adjust the expected order by adding nans accordingly
# This is for testing whether rank calculation is affected
# when values are interwined with nan values.
values = np.array(contents, dtype=dtype)
exp_order = np.array(range(len(values)), dtype="float64") + 1.0
if dtype in dtype_na_map:
na_value = dtype_na_map[dtype]
nan_indices = np.random.choice(range(len(values)), 5)
values = np.insert(values, nan_indices, na_value)
exp_order = np.insert(exp_order, nan_indices, np.nan)
# shuffle the testing array and expected results in the same way
random_order = np.random.permutation(len(values))
iseries = Series(values[random_order])
exp = Series(exp_order[random_order], dtype="float64")
iranks = iseries.rank()
tm.assert_series_equal(iranks, exp)
def test_rank_tie_methods(self):
s = self.s
def _check(s, expected, method="average"):
result = s.rank(method=method)
tm.assert_series_equal(result, Series(expected))
dtypes = [None, object]
disabled = {(object, "first")}
results = self.results
for method, dtype in product(results, dtypes):
if (dtype, method) in disabled:
continue
series = s if dtype is None else s.astype(dtype)
_check(series, results[method], method=method)
@td.skip_if_no_scipy
@pytest.mark.parametrize("ascending", [True, False])
@pytest.mark.parametrize("method", ["average", "min", "max", "first", "dense"])
@pytest.mark.parametrize("na_option", ["top", "bottom", "keep"])
def test_rank_tie_methods_on_infs_nans(self, method, na_option, ascending):
dtypes = [
("object", None, Infinity(), NegInfinity()),
("float64", np.nan, np.inf, -np.inf),
]
chunk = 3
disabled = {("object", "first")}
def _check(s, method, na_option, ascending):
exp_ranks = {
"average": ([2, 2, 2], [5, 5, 5], [8, 8, 8]),
"min": ([1, 1, 1], [4, 4, 4], [7, 7, 7]),
"max": ([3, 3, 3], [6, 6, 6], [9, 9, 9]),
"first": ([1, 2, 3], [4, 5, 6], [7, 8, 9]),
"dense": ([1, 1, 1], [2, 2, 2], [3, 3, 3]),
}
ranks = exp_ranks[method]
if na_option == "top":
order = [ranks[1], ranks[0], ranks[2]]
elif na_option == "bottom":
order = [ranks[0], ranks[2], ranks[1]]
else:
order = [ranks[0], [np.nan] * chunk, ranks[1]]
expected = order if ascending else order[::-1]
expected = list(chain.from_iterable(expected))
result = s.rank(method=method, na_option=na_option, ascending=ascending)
tm.assert_series_equal(result, Series(expected, dtype="float64"))
for dtype, na_value, pos_inf, neg_inf in dtypes:
in_arr = [neg_inf] * chunk + [na_value] * chunk + [pos_inf] * chunk
iseries = Series(in_arr, dtype=dtype)
if (dtype, method) in disabled:
continue
_check(iseries, method, na_option, ascending)
def test_rank_desc_mix_nans_infs(self):
# GH 19538
# check descending ranking when mix nans and infs
iseries = Series([1, np.nan, np.inf, -np.inf, 25])
result = iseries.rank(ascending=False)
exp = Series([3, np.nan, 1, 4, 2], dtype="float64")
tm.assert_series_equal(result, exp)
def test_rank_methods_series(self):
pytest.importorskip("scipy.stats.special")
rankdata = pytest.importorskip("scipy.stats.rankdata")
xs = np.random.randn(9)
xs = np.concatenate([xs[i:] for i in range(0, 9, 2)]) # add duplicates
np.random.shuffle(xs)
index = [chr(ord("a") + i) for i in range(len(xs))]
for vals in [xs, xs + 1e6, xs * 1e-6]:
ts = Series(vals, index=index)
for m in ["average", "min", "max", "first", "dense"]:
result = ts.rank(method=m)
sprank = rankdata(vals, m if m != "first" else "ordinal")
expected = Series(sprank, index=index).astype("float64")
tm.assert_series_equal(result, expected)
def test_rank_dense_method(self):
dtypes = ["O", "f8", "i8"]
in_out = [
([1], [1]),
([2], [1]),
([0], [1]),
([2, 2], [1, 1]),
([1, 2, 3], [1, 2, 3]),
([4, 2, 1], [3, 2, 1]),
([1, 1, 5, 5, 3], [1, 1, 3, 3, 2]),
([-5, -4, -3, -2, -1], [1, 2, 3, 4, 5]),
]
for ser, exp in in_out:
for dtype in dtypes:
s = Series(ser).astype(dtype)
result = s.rank(method="dense")
expected = Series(exp).astype(result.dtype)
tm.assert_series_equal(result, expected)
def test_rank_descending(self):
dtypes = ["O", "f8", "i8"]
for dtype, method in product(dtypes, self.results):
if "i" in dtype:
s = self.s.dropna()
else:
s = self.s.astype(dtype)
res = s.rank(ascending=False)
expected = (s.max() - s).rank()
tm.assert_series_equal(res, expected)
if method == "first" and dtype == "O":
continue
expected = (s.max() - s).rank(method=method)
res2 = s.rank(method=method, ascending=False)
tm.assert_series_equal(res2, expected)
def test_rank_int(self):
s = self.s.dropna().astype("i8")
for method, res in self.results.items():
result = s.rank(method=method)
expected = Series(res).dropna()
expected.index = result.index
tm.assert_series_equal(result, expected)
def test_rank_object_bug(self):
# GH 13445
# smoke tests
Series([np.nan] * 32).astype(object).rank(ascending=True)
Series([np.nan] * 32).astype(object).rank(ascending=False)
def test_rank_modify_inplace(self):
# GH 18521
# Check rank does not mutate series
s = Series([Timestamp("2017-01-05 10:20:27.569000"), NaT])
expected = s.copy()
s.rank()
result = s
tm.assert_series_equal(result, expected)
# GH15630, pct should be on 100% basis when method='dense'
@pytest.mark.parametrize("dtype", ["O", "f8", "i8"])
@pytest.mark.parametrize(
"ser, exp",
[
([1], [1.0]),
([1, 2], [1.0 / 2, 2.0 / 2]),
([2, 2], [1.0, 1.0]),
([1, 2, 3], [1.0 / 3, 2.0 / 3, 3.0 / 3]),
([1, 2, 2], [1.0 / 2, 2.0 / 2, 2.0 / 2]),
([4, 2, 1], [3.0 / 3, 2.0 / 3, 1.0 / 3]),
([1, 1, 5, 5, 3], [1.0 / 3, 1.0 / 3, 3.0 / 3, 3.0 / 3, 2.0 / 3]),
([1, 1, 3, 3, 5, 5], [1.0 / 3, 1.0 / 3, 2.0 / 3, 2.0 / 3, 3.0 / 3, 3.0 / 3]),
([-5, -4, -3, -2, -1], [1.0 / 5, 2.0 / 5, 3.0 / 5, 4.0 / 5, 5.0 / 5]),
],
)
def test_rank_dense_pct(dtype, ser, exp):
s = Series(ser).astype(dtype)
result = s.rank(method="dense", pct=True)
expected = Series(exp).astype(result.dtype)
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("dtype", ["O", "f8", "i8"])
@pytest.mark.parametrize(
"ser, exp",
[
([1], [1.0]),
([1, 2], [1.0 / 2, 2.0 / 2]),
([2, 2], [1.0 / 2, 1.0 / 2]),
([1, 2, 3], [1.0 / 3, 2.0 / 3, 3.0 / 3]),
([1, 2, 2], [1.0 / 3, 2.0 / 3, 2.0 / 3]),
([4, 2, 1], [3.0 / 3, 2.0 / 3, 1.0 / 3]),
([1, 1, 5, 5, 3], [1.0 / 5, 1.0 / 5, 4.0 / 5, 4.0 / 5, 3.0 / 5]),
([1, 1, 3, 3, 5, 5], [1.0 / 6, 1.0 / 6, 3.0 / 6, 3.0 / 6, 5.0 / 6, 5.0 / 6]),
([-5, -4, -3, -2, -1], [1.0 / 5, 2.0 / 5, 3.0 / 5, 4.0 / 5, 5.0 / 5]),
],
)
def test_rank_min_pct(dtype, ser, exp):
s = Series(ser).astype(dtype)
result = s.rank(method="min", pct=True)
expected = Series(exp).astype(result.dtype)
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("dtype", ["O", "f8", "i8"])
@pytest.mark.parametrize(
"ser, exp",
[
([1], [1.0]),
([1, 2], [1.0 / 2, 2.0 / 2]),
([2, 2], [1.0, 1.0]),
([1, 2, 3], [1.0 / 3, 2.0 / 3, 3.0 / 3]),
([1, 2, 2], [1.0 / 3, 3.0 / 3, 3.0 / 3]),
([4, 2, 1], [3.0 / 3, 2.0 / 3, 1.0 / 3]),
([1, 1, 5, 5, 3], [2.0 / 5, 2.0 / 5, 5.0 / 5, 5.0 / 5, 3.0 / 5]),
([1, 1, 3, 3, 5, 5], [2.0 / 6, 2.0 / 6, 4.0 / 6, 4.0 / 6, 6.0 / 6, 6.0 / 6]),
([-5, -4, -3, -2, -1], [1.0 / 5, 2.0 / 5, 3.0 / 5, 4.0 / 5, 5.0 / 5]),
],
)
def test_rank_max_pct(dtype, ser, exp):
s = Series(ser).astype(dtype)
result = s.rank(method="max", pct=True)
expected = Series(exp).astype(result.dtype)
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("dtype", ["O", "f8", "i8"])
@pytest.mark.parametrize(
"ser, exp",
[
([1], [1.0]),
([1, 2], [1.0 / 2, 2.0 / 2]),
([2, 2], [1.5 / 2, 1.5 / 2]),
([1, 2, 3], [1.0 / 3, 2.0 / 3, 3.0 / 3]),
([1, 2, 2], [1.0 / 3, 2.5 / 3, 2.5 / 3]),
([4, 2, 1], [3.0 / 3, 2.0 / 3, 1.0 / 3]),
([1, 1, 5, 5, 3], [1.5 / 5, 1.5 / 5, 4.5 / 5, 4.5 / 5, 3.0 / 5]),
([1, 1, 3, 3, 5, 5], [1.5 / 6, 1.5 / 6, 3.5 / 6, 3.5 / 6, 5.5 / 6, 5.5 / 6]),
([-5, -4, -3, -2, -1], [1.0 / 5, 2.0 / 5, 3.0 / 5, 4.0 / 5, 5.0 / 5]),
],
)
def test_rank_average_pct(dtype, ser, exp):
s = Series(ser).astype(dtype)
result = s.rank(method="average", pct=True)
expected = Series(exp).astype(result.dtype)
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("dtype", ["f8", "i8"])
@pytest.mark.parametrize(
"ser, exp",
[
([1], [1.0]),
([1, 2], [1.0 / 2, 2.0 / 2]),
([2, 2], [1.0 / 2, 2.0 / 2.0]),
([1, 2, 3], [1.0 / 3, 2.0 / 3, 3.0 / 3]),
([1, 2, 2], [1.0 / 3, 2.0 / 3, 3.0 / 3]),
([4, 2, 1], [3.0 / 3, 2.0 / 3, 1.0 / 3]),
([1, 1, 5, 5, 3], [1.0 / 5, 2.0 / 5, 4.0 / 5, 5.0 / 5, 3.0 / 5]),
([1, 1, 3, 3, 5, 5], [1.0 / 6, 2.0 / 6, 3.0 / 6, 4.0 / 6, 5.0 / 6, 6.0 / 6]),
([-5, -4, -3, -2, -1], [1.0 / 5, 2.0 / 5, 3.0 / 5, 4.0 / 5, 5.0 / 5]),
],
)
def test_rank_first_pct(dtype, ser, exp):
s = Series(ser).astype(dtype)
result = s.rank(method="first", pct=True)
expected = Series(exp).astype(result.dtype)
tm.assert_series_equal(result, expected)
@pytest.mark.single
@pytest.mark.high_memory
def test_pct_max_many_rows():
# GH 18271
s = Series(np.arange(2 ** 24 + 1))
result = s.rank(pct=True).max()
assert result == 1