from flair.data import Sentence from flair.models import SequenceTagger from tqdm import tqdm # --------------------- VARIABLES ---------------------- # # ----------------- DATA PREPROCESSING ----------------- # # def convert_to_BIO_format(directory): # """ # Read data in BIO format. # """ # _in = open(directory + "/in.tsv", "r").read().split(" ") # _expected = open(directory + "/expected.tsv", "r").read().split(" ") # _lines = list(map(lambda x: f"{x[0]} {x[1]}", zip(_in, _expected))) # _lines = list(map(lambda x: "" if x.startswith("") else x, _lines)) # open(directory + "/in_bio.tsv", "w").write("\n".join(_lines)) # convert_to_BIO_format("dev-0") # ---------------------- GENERATE PREDICTIONS ---------------------- # DIRECTORY = "dev-0" # load tagger tagger = SequenceTagger.load("flair/ner-english") batches = open(f"{DIRECTORY}/in.tsv", "r").read().split("\n")[:-1] results = [] with tqdm(total=len(batches)) as pbar: for batch in batches: batch_result = [] for sentence in batch.split(""): raw_sentence = sentence sentence = sentence.strip() if sentence == "": continue sentence = Sentence(sentence, use_tokenizer=False) tagger.predict(sentence) out = ["O"] * len(sentence) for entity in sentence.get_spans('ner'): is_first = True for token in entity: if is_first: out[token.idx - 1] = f"B-{entity.tag}" else: out[token.idx - 1] = f"I-{entity.tag}" is_first = False batch_result.append(" ".join(out)) results.append(" O ".join(batch_result) + " O") pbar.update(1) open(f"{DIRECTORY}/out.tsv", "w").write("\n".join(results)) # 456