From 248ef29471dcdc13631ea1693f701335a05c4801 Mon Sep 17 00:00:00 2001 From: Szymon Bartanowicz Date: Sat, 18 May 2024 19:42:40 +0200 Subject: [PATCH] mlflow --- mlflow/MLproject | 2 +- mlflow/mlflow_model.py | 62 +++++++++++++------ mlflow/mlruns/0/meta.yaml | 6 ++ .../meta.yaml | 15 +++++ .../params/epoches | 1 + .../params/epochs | 1 + .../tags/mlflow.gitRepoURL | 1 + .../tags/mlflow.project.entryPoint | 1 + .../tags/mlflow.project.env | 1 + .../tags/mlflow.runName | 1 + .../tags/mlflow.source.git.commit | 1 + .../tags/mlflow.source.git.repoURL | 1 + .../tags/mlflow.source.name | 1 + .../tags/mlflow.source.type | 1 + .../tags/mlflow.user | 1 + .../meta.yaml | 15 +++++ .../params/epoches | 1 + .../params/epochs | 1 + .../tags/mlflow.gitRepoURL | 1 + .../tags/mlflow.project.backend | 1 + .../tags/mlflow.project.entryPoint | 1 + .../tags/mlflow.project.env | 1 + .../tags/mlflow.runName | 1 + .../tags/mlflow.source.git.commit | 1 + .../tags/mlflow.source.git.repoURL | 1 + .../tags/mlflow.source.name | 1 + .../tags/mlflow.source.type | 1 + .../tags/mlflow.user | 1 + .../meta.yaml | 15 +++++ .../params/epochs | 1 + .../tags/mlflow.gitRepoURL | 1 + .../tags/mlflow.project.backend | 1 + .../tags/mlflow.project.entryPoint | 1 + .../tags/mlflow.project.env | 1 + .../tags/mlflow.runName | 1 + .../tags/mlflow.source.git.commit | 1 + .../tags/mlflow.source.git.repoURL | 1 + .../tags/mlflow.source.name | 1 + .../tags/mlflow.source.type | 1 + .../tags/mlflow.user | 1 + .../meta.yaml | 15 +++++ .../params/epoches | 1 + .../params/epochs | 1 + .../tags/mlflow.gitRepoURL | 1 + .../tags/mlflow.project.backend | 1 + .../tags/mlflow.project.entryPoint | 1 + .../tags/mlflow.project.env | 1 + .../tags/mlflow.runName | 1 + .../tags/mlflow.source.git.commit | 1 + .../tags/mlflow.source.git.repoURL | 1 + .../tags/mlflow.source.name | 1 + .../tags/mlflow.source.type | 1 + .../tags/mlflow.user | 1 + 53 files changed, 156 insertions(+), 20 deletions(-) create mode 100644 mlflow/mlruns/0/meta.yaml create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/meta.yaml create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epoches create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epochs create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.gitRepoURL create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.entryPoint create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.env create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.runName create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.commit create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.repoURL create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.name create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.type create mode 100644 mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.user create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/meta.yaml create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/params/epoches create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/params/epochs create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.gitRepoURL create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.project.backend create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.project.entryPoint create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.project.env create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.runName create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.source.git.commit create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.source.git.repoURL create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.source.name create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.source.type create mode 100644 mlruns/0/a7bad8d56b5a476193134123f3175c00/tags/mlflow.user create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/meta.yaml create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/params/epochs create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.gitRepoURL create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.project.backend create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.project.entryPoint create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.project.env create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.runName create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.source.git.commit create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.source.git.repoURL create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.source.name create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.source.type create mode 100644 mlruns/0/b7c7e490ed0f4a6d98293d275b5f67a9/tags/mlflow.user create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/meta.yaml create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/params/epoches create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/params/epochs create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.gitRepoURL create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.project.backend create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.project.entryPoint create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.project.env create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.runName create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.source.git.commit create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.source.git.repoURL create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.source.name create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.source.type create mode 100644 mlruns/0/dd9e039328564f8bb20449bd7bea8ab1/tags/mlflow.user diff --git a/mlflow/MLproject b/mlflow/MLproject index 8656fef..c4fb13b 100644 --- a/mlflow/MLproject +++ b/mlflow/MLproject @@ -1,7 +1,7 @@ name: MLflow_s464937 conda_env: conda.yaml entry_points: - optimal_parameters: + main: parameters: epochs: { type: int, default: 20 } command: 'python mlflow_model.py {epochs}' \ No newline at end of file diff --git a/mlflow/mlflow_model.py b/mlflow/mlflow_model.py index ec1784d..296af06 100644 --- a/mlflow/mlflow_model.py +++ b/mlflow/mlflow_model.py @@ -7,6 +7,8 @@ from sklearn.pipeline import Pipeline from tensorflow.keras.models import Sequential from tensorflow.keras.layers import Dense import tensorflow as tf +from sklearn.metrics import accuracy_score, precision_recall_fscore_support, mean_squared_error +from math import sqrt import mlflow @@ -14,41 +16,63 @@ mlflow.set_tracking_uri("http://localhost:5000") def main(): - data = pd.read_csv('./data/train.csv') - + data = pd.read_csv('../openpowerlifting.csv') data = data[['Sex', 'Age', 'BodyweightKg', 'TotalKg']].dropna() data['Age'] = pd.to_numeric(data['Age'], errors='coerce') data['BodyweightKg'] = pd.to_numeric(data['BodyweightKg'], errors='coerce') data['TotalKg'] = pd.to_numeric(data['TotalKg'], errors='coerce') features = data[['Sex', 'Age', 'BodyweightKg']] target = data['TotalKg'] - X_train, X_test, y_train, y_test = train_test_split(features, target, test_size=0.2, random_state=42) - preprocessor = ColumnTransformer( - transformers=[ - ('num', StandardScaler(), ['Age', 'BodyweightKg']), - ('cat', OneHotEncoder(), ['Sex']) - ], - ) + with mlflow.start_run() as run: + preprocessor = ColumnTransformer( + transformers=[ + ('num', StandardScaler(), ['Age', 'BodyweightKg']), + ('cat', OneHotEncoder(), ['Sex']) + ], + ) - pipeline = Pipeline(steps=[ - ('preprocessor', preprocessor), - ('model', Sequential([ + model = Sequential([ Dense(64, activation='relu', input_dim=5), Dense(64, activation='relu'), Dense(1) - ])) - ]) + ]) - pipeline['model'].compile(optimizer='adam', loss='mse', metrics=['mae']) + model.compile(optimizer='adam', loss='mse', metrics=['mae']) + pipeline = Pipeline(steps=[ + ('preprocessor', preprocessor), + ('model', model) + ]) - X_train_excluded = X_train.iloc[1:] - y_train_excluded = y_train.iloc[1:] + X_train_excluded = X_train.iloc[1:] + y_train_excluded = y_train.iloc[1:] + pipeline.fit(X_train_excluded, y_train_excluded, model__epochs=int(sys.argv[1]), model__validation_split=0.1) + pipeline['model'].save('powerlifting_model.h5') + loaded_model = tf.keras.models.load_model('powerlifting_model.h5') - pipeline.fit(X_train_excluded, y_train_excluded, model__epochs=int(sys.argv[1]), model__validation_split=0.1) + test_data = pd.read_csv('openpowerlifting.csv') + test_data = test_data[['Sex', 'Age', 'BodyweightKg', 'TotalKg']].dropna() + test_data['Age'] = pd.to_numeric(test_data['Age'], errors='coerce') + test_data['BodyweightKg'] = pd.to_numeric(test_data['BodyweightKg'], errors='coerce') + test_data['TotalKg'] = pd.to_numeric(test_data['TotalKg'], errors='coerce') + test_features = test_data[['Sex', 'Age', 'BodyweightKg']] + test_target = test_data['TotalKg'] - pipeline['model'].save('powerlifting_model.h5') + X_test_transformed = preprocessor.transform(test_features) + predictions = loaded_model.predict(X_test_transformed) + predictions_df = pd.DataFrame(predictions, columns=['predicted_TotalKg']) + predictions_df['actual_TotalKg'] = test_target.reset_index(drop=True) + predictions_df.to_csv('powerlifting_test_predictions.csv', index=False) + + data = pd.read_csv('powerlifting_test_predictions.csv') + y_pred = data['predicted_TotalKg'] + y_test = data['actual_TotalKg'] + rmse = sqrt(mean_squared_error(y_test, y_pred)) + + + mlflow.log_param("epochs", int(sys.argv[1])) + mlflow.log_metric("rmse", rmse) if __name__ == '__main__': diff --git a/mlflow/mlruns/0/meta.yaml b/mlflow/mlruns/0/meta.yaml new file mode 100644 index 0000000..b6527e5 --- /dev/null +++ b/mlflow/mlruns/0/meta.yaml @@ -0,0 +1,6 @@ +artifact_location: mlflow-artifacts:/0 +creation_time: 1716052613528 +experiment_id: '0' +last_update_time: 1716052613528 +lifecycle_stage: active +name: Default diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/meta.yaml b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/meta.yaml new file mode 100644 index 0000000..284b9bd --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/meta.yaml @@ -0,0 +1,15 @@ +artifact_uri: mlflow-artifacts:/0/852a00be19a04756b19b2a0fdb0c6a83/artifacts +end_time: null +entry_point_name: '' +experiment_id: '0' +lifecycle_stage: active +run_id: 852a00be19a04756b19b2a0fdb0c6a83 +run_name: skillful-worm-708 +run_uuid: 852a00be19a04756b19b2a0fdb0c6a83 +source_name: '' +source_type: 4 +source_version: '' +start_time: 1716053034879 +status: 1 +tags: [] +user_id: szymonbartanowicz diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epoches b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epoches new file mode 100644 index 0000000..3cacc0b --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epoches @@ -0,0 +1 @@ +12 \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epochs b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epochs new file mode 100644 index 0000000..2edeafb --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/params/epochs @@ -0,0 +1 @@ +20 \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.gitRepoURL b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.gitRepoURL new file mode 100644 index 0000000..46d50cf --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.gitRepoURL @@ -0,0 +1 @@ +https://git.wmi.amu.edu.pl/s464937/ium_464937.git \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.entryPoint b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.entryPoint new file mode 100644 index 0000000..88d050b --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.entryPoint @@ -0,0 +1 @@ +main \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.env b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.env new file mode 100644 index 0000000..f79e4cb --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.project.env @@ -0,0 +1 @@ +conda \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.runName b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.runName new file mode 100644 index 0000000..c8f8e05 --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.runName @@ -0,0 +1 @@ +skillful-worm-708 \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.commit b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.commit new file mode 100644 index 0000000..5595a94 --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.commit @@ -0,0 +1 @@ +57def16f1aff244cfe1e2bc1042a97b64459753e \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.repoURL b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.repoURL new file mode 100644 index 0000000..46d50cf --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.git.repoURL @@ -0,0 +1 @@ +https://git.wmi.amu.edu.pl/s464937/ium_464937.git \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.name b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.name new file mode 100644 index 0000000..b39c388 --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.name @@ -0,0 +1 @@ +file:///Users/szymonbartanowicz/studia/mag_1/inzynieria_uczenia_maszynowego/ium_464937#mlflow \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.type b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.type new file mode 100644 index 0000000..53f9167 --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.source.type @@ -0,0 +1 @@ +PROJECT \ No newline at end of file diff --git a/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.user b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.user new file mode 100644 index 0000000..883fe99 --- /dev/null +++ b/mlruns/0/852a00be19a04756b19b2a0fdb0c6a83/tags/mlflow.user @@ -0,0 +1 @@ +szymonbartanowicz \ No newline at end of file diff --git a/mlruns/0/a7bad8d56b5a476193134123f3175c00/meta.yaml b/mlruns/0/a7bad8d56b5a476193134123f3175c00/meta.yaml new file mode 100644 index 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