3RNN/Lib/site-packages/sklearn/svm/tests/test_svm.py

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"""
Testing for Support Vector Machine module (sklearn.svm)
TODO: remove hard coded numerical results when possible
"""
import numpy as np
import pytest
from numpy.testing import (
assert_allclose,
assert_almost_equal,
assert_array_almost_equal,
assert_array_equal,
)
from sklearn import base, datasets, linear_model, metrics, svm
from sklearn.datasets import make_blobs, make_classification
from sklearn.exceptions import (
ConvergenceWarning,
NotFittedError,
UndefinedMetricWarning,
)
from sklearn.metrics import f1_score
from sklearn.metrics.pairwise import rbf_kernel
from sklearn.model_selection import train_test_split
from sklearn.multiclass import OneVsRestClassifier
# mypy error: Module 'sklearn.svm' has no attribute '_libsvm'
from sklearn.svm import ( # type: ignore
SVR,
LinearSVC,
LinearSVR,
NuSVR,
OneClassSVM,
_libsvm,
)
from sklearn.svm._classes import _validate_dual_parameter
from sklearn.utils import check_random_state, shuffle
from sklearn.utils._testing import ignore_warnings
from sklearn.utils.fixes import CSR_CONTAINERS, LIL_CONTAINERS
from sklearn.utils.validation import _num_samples
# toy sample
X = [[-2, -1], [-1, -1], [-1, -2], [1, 1], [1, 2], [2, 1]]
Y = [1, 1, 1, 2, 2, 2]
T = [[-1, -1], [2, 2], [3, 2]]
true_result = [1, 2, 2]
# also load the iris dataset
iris = datasets.load_iris()
rng = check_random_state(42)
perm = rng.permutation(iris.target.size)
iris.data = iris.data[perm]
iris.target = iris.target[perm]
def test_libsvm_parameters():
# Test parameters on classes that make use of libsvm.
clf = svm.SVC(kernel="linear").fit(X, Y)
assert_array_equal(clf.dual_coef_, [[-0.25, 0.25]])
assert_array_equal(clf.support_, [1, 3])
assert_array_equal(clf.support_vectors_, (X[1], X[3]))
assert_array_equal(clf.intercept_, [0.0])
assert_array_equal(clf.predict(X), Y)
def test_libsvm_iris():
# Check consistency on dataset iris.
# shuffle the dataset so that labels are not ordered
for k in ("linear", "rbf"):
clf = svm.SVC(kernel=k).fit(iris.data, iris.target)
assert np.mean(clf.predict(iris.data) == iris.target) > 0.9
assert hasattr(clf, "coef_") == (k == "linear")
assert_array_equal(clf.classes_, np.sort(clf.classes_))
# check also the low-level API
# We unpack the values to create a dictionary with some of the return values
# from Libsvm's fit.
(
libsvm_support,
libsvm_support_vectors,
libsvm_n_class_SV,
libsvm_sv_coef,
libsvm_intercept,
libsvm_probA,
libsvm_probB,
# libsvm_fit_status and libsvm_n_iter won't be used below.
libsvm_fit_status,
libsvm_n_iter,
) = _libsvm.fit(iris.data, iris.target.astype(np.float64))
model_params = {
"support": libsvm_support,
"SV": libsvm_support_vectors,
"nSV": libsvm_n_class_SV,
"sv_coef": libsvm_sv_coef,
"intercept": libsvm_intercept,
"probA": libsvm_probA,
"probB": libsvm_probB,
}
pred = _libsvm.predict(iris.data, **model_params)
assert np.mean(pred == iris.target) > 0.95
# We unpack the values to create a dictionary with some of the return values
# from Libsvm's fit.
(
libsvm_support,
libsvm_support_vectors,
libsvm_n_class_SV,
libsvm_sv_coef,
libsvm_intercept,
libsvm_probA,
libsvm_probB,
# libsvm_fit_status and libsvm_n_iter won't be used below.
libsvm_fit_status,
libsvm_n_iter,
) = _libsvm.fit(iris.data, iris.target.astype(np.float64), kernel="linear")
model_params = {
"support": libsvm_support,
"SV": libsvm_support_vectors,
"nSV": libsvm_n_class_SV,
"sv_coef": libsvm_sv_coef,
"intercept": libsvm_intercept,
"probA": libsvm_probA,
"probB": libsvm_probB,
}
pred = _libsvm.predict(iris.data, **model_params, kernel="linear")
assert np.mean(pred == iris.target) > 0.95
pred = _libsvm.cross_validation(
iris.data, iris.target.astype(np.float64), 5, kernel="linear", random_seed=0
)
assert np.mean(pred == iris.target) > 0.95
# If random_seed >= 0, the libsvm rng is seeded (by calling `srand`), hence
# we should get deterministic results (assuming that there is no other
# thread calling this wrapper calling `srand` concurrently).
pred2 = _libsvm.cross_validation(
iris.data, iris.target.astype(np.float64), 5, kernel="linear", random_seed=0
)
assert_array_equal(pred, pred2)
def test_precomputed():
# SVC with a precomputed kernel.
# We test it with a toy dataset and with iris.
clf = svm.SVC(kernel="precomputed")
# Gram matrix for train data (square matrix)
# (we use just a linear kernel)
K = np.dot(X, np.array(X).T)
clf.fit(K, Y)
# Gram matrix for test data (rectangular matrix)
KT = np.dot(T, np.array(X).T)
pred = clf.predict(KT)
with pytest.raises(ValueError):
clf.predict(KT.T)
assert_array_equal(clf.dual_coef_, [[-0.25, 0.25]])
assert_array_equal(clf.support_, [1, 3])
assert_array_equal(clf.intercept_, [0])
assert_array_almost_equal(clf.support_, [1, 3])
assert_array_equal(pred, true_result)
# Gram matrix for test data but compute KT[i,j]
# for support vectors j only.
KT = np.zeros_like(KT)
for i in range(len(T)):
for j in clf.support_:
KT[i, j] = np.dot(T[i], X[j])
pred = clf.predict(KT)
assert_array_equal(pred, true_result)
# same as before, but using a callable function instead of the kernel
# matrix. kernel is just a linear kernel
def kfunc(x, y):
return np.dot(x, y.T)
clf = svm.SVC(kernel=kfunc)
clf.fit(np.array(X), Y)
pred = clf.predict(T)
assert_array_equal(clf.dual_coef_, [[-0.25, 0.25]])
assert_array_equal(clf.intercept_, [0])
assert_array_almost_equal(clf.support_, [1, 3])
assert_array_equal(pred, true_result)
# test a precomputed kernel with the iris dataset
# and check parameters against a linear SVC
clf = svm.SVC(kernel="precomputed")
clf2 = svm.SVC(kernel="linear")
K = np.dot(iris.data, iris.data.T)
clf.fit(K, iris.target)
clf2.fit(iris.data, iris.target)
pred = clf.predict(K)
assert_array_almost_equal(clf.support_, clf2.support_)
assert_array_almost_equal(clf.dual_coef_, clf2.dual_coef_)
assert_array_almost_equal(clf.intercept_, clf2.intercept_)
assert_almost_equal(np.mean(pred == iris.target), 0.99, decimal=2)
# Gram matrix for test data but compute KT[i,j]
# for support vectors j only.
K = np.zeros_like(K)
for i in range(len(iris.data)):
for j in clf.support_:
K[i, j] = np.dot(iris.data[i], iris.data[j])
pred = clf.predict(K)
assert_almost_equal(np.mean(pred == iris.target), 0.99, decimal=2)
clf = svm.SVC(kernel=kfunc)
clf.fit(iris.data, iris.target)
assert_almost_equal(np.mean(pred == iris.target), 0.99, decimal=2)
def test_svr():
# Test Support Vector Regression
diabetes = datasets.load_diabetes()
for clf in (
svm.NuSVR(kernel="linear", nu=0.4, C=1.0),
svm.NuSVR(kernel="linear", nu=0.4, C=10.0),
svm.SVR(kernel="linear", C=10.0),
svm.LinearSVR(C=10.0),
svm.LinearSVR(C=10.0),
):
clf.fit(diabetes.data, diabetes.target)
assert clf.score(diabetes.data, diabetes.target) > 0.02
# non-regression test; previously, BaseLibSVM would check that
# len(np.unique(y)) < 2, which must only be done for SVC
svm.SVR().fit(diabetes.data, np.ones(len(diabetes.data)))
svm.LinearSVR().fit(diabetes.data, np.ones(len(diabetes.data)))
def test_linearsvr():
# check that SVR(kernel='linear') and LinearSVC() give
# comparable results
diabetes = datasets.load_diabetes()
lsvr = svm.LinearSVR(C=1e3).fit(diabetes.data, diabetes.target)
score1 = lsvr.score(diabetes.data, diabetes.target)
svr = svm.SVR(kernel="linear", C=1e3).fit(diabetes.data, diabetes.target)
score2 = svr.score(diabetes.data, diabetes.target)
assert_allclose(np.linalg.norm(lsvr.coef_), np.linalg.norm(svr.coef_), 1, 0.0001)
assert_almost_equal(score1, score2, 2)
def test_linearsvr_fit_sampleweight():
# check correct result when sample_weight is 1
# check that SVR(kernel='linear') and LinearSVC() give
# comparable results
diabetes = datasets.load_diabetes()
n_samples = len(diabetes.target)
unit_weight = np.ones(n_samples)
lsvr = svm.LinearSVR(C=1e3, tol=1e-12, max_iter=10000).fit(
diabetes.data, diabetes.target, sample_weight=unit_weight
)
score1 = lsvr.score(diabetes.data, diabetes.target)
lsvr_no_weight = svm.LinearSVR(C=1e3, tol=1e-12, max_iter=10000).fit(
diabetes.data, diabetes.target
)
score2 = lsvr_no_weight.score(diabetes.data, diabetes.target)
assert_allclose(
np.linalg.norm(lsvr.coef_), np.linalg.norm(lsvr_no_weight.coef_), 1, 0.0001
)
assert_almost_equal(score1, score2, 2)
# check that fit(X) = fit([X1, X2, X3], sample_weight = [n1, n2, n3]) where
# X = X1 repeated n1 times, X2 repeated n2 times and so forth
random_state = check_random_state(0)
random_weight = random_state.randint(0, 10, n_samples)
lsvr_unflat = svm.LinearSVR(C=1e3, tol=1e-12, max_iter=10000).fit(
diabetes.data, diabetes.target, sample_weight=random_weight
)
score3 = lsvr_unflat.score(
diabetes.data, diabetes.target, sample_weight=random_weight
)
X_flat = np.repeat(diabetes.data, random_weight, axis=0)
y_flat = np.repeat(diabetes.target, random_weight, axis=0)
lsvr_flat = svm.LinearSVR(C=1e3, tol=1e-12, max_iter=10000).fit(X_flat, y_flat)
score4 = lsvr_flat.score(X_flat, y_flat)
assert_almost_equal(score3, score4, 2)
def test_svr_errors():
X = [[0.0], [1.0]]
y = [0.0, 0.5]
# Bad kernel
clf = svm.SVR(kernel=lambda x, y: np.array([[1.0]]))
clf.fit(X, y)
with pytest.raises(ValueError):
clf.predict(X)
def test_oneclass():
# Test OneClassSVM
clf = svm.OneClassSVM()
clf.fit(X)
pred = clf.predict(T)
assert_array_equal(pred, [1, -1, -1])
assert pred.dtype == np.dtype("intp")
assert_array_almost_equal(clf.intercept_, [-1.218], decimal=3)
assert_array_almost_equal(clf.dual_coef_, [[0.750, 0.750, 0.750, 0.750]], decimal=3)
with pytest.raises(AttributeError):
(lambda: clf.coef_)()
def test_oneclass_decision_function():
# Test OneClassSVM decision function
clf = svm.OneClassSVM()
rnd = check_random_state(2)
# Generate train data
X = 0.3 * rnd.randn(100, 2)
X_train = np.r_[X + 2, X - 2]
# Generate some regular novel observations
X = 0.3 * rnd.randn(20, 2)
X_test = np.r_[X + 2, X - 2]
# Generate some abnormal novel observations
X_outliers = rnd.uniform(low=-4, high=4, size=(20, 2))
# fit the model
clf = svm.OneClassSVM(nu=0.1, kernel="rbf", gamma=0.1)
clf.fit(X_train)
# predict things
y_pred_test = clf.predict(X_test)
assert np.mean(y_pred_test == 1) > 0.9
y_pred_outliers = clf.predict(X_outliers)
assert np.mean(y_pred_outliers == -1) > 0.9
dec_func_test = clf.decision_function(X_test)
assert_array_equal((dec_func_test > 0).ravel(), y_pred_test == 1)
dec_func_outliers = clf.decision_function(X_outliers)
assert_array_equal((dec_func_outliers > 0).ravel(), y_pred_outliers == 1)
def test_oneclass_score_samples():
X_train = [[1, 1], [1, 2], [2, 1]]
clf = svm.OneClassSVM(gamma=1).fit(X_train)
assert_array_equal(
clf.score_samples([[2.0, 2.0]]),
clf.decision_function([[2.0, 2.0]]) + clf.offset_,
)
def test_tweak_params():
# Make sure some tweaking of parameters works.
# We change clf.dual_coef_ at run time and expect .predict() to change
# accordingly. Notice that this is not trivial since it involves a lot
# of C/Python copying in the libsvm bindings.
# The success of this test ensures that the mapping between libsvm and
# the python classifier is complete.
clf = svm.SVC(kernel="linear", C=1.0)
clf.fit(X, Y)
assert_array_equal(clf.dual_coef_, [[-0.25, 0.25]])
assert_array_equal(clf.predict([[-0.1, -0.1]]), [1])
clf._dual_coef_ = np.array([[0.0, 1.0]])
assert_array_equal(clf.predict([[-0.1, -0.1]]), [2])
def test_probability():
# Predict probabilities using SVC
# This uses cross validation, so we use a slightly bigger testing set.
for clf in (
svm.SVC(probability=True, random_state=0, C=1.0),
svm.NuSVC(probability=True, random_state=0),
):
clf.fit(iris.data, iris.target)
prob_predict = clf.predict_proba(iris.data)
assert_array_almost_equal(np.sum(prob_predict, 1), np.ones(iris.data.shape[0]))
assert np.mean(np.argmax(prob_predict, 1) == clf.predict(iris.data)) > 0.9
assert_almost_equal(
clf.predict_proba(iris.data), np.exp(clf.predict_log_proba(iris.data)), 8
)
def test_decision_function():
# Test decision_function
# Sanity check, test that decision_function implemented in python
# returns the same as the one in libsvm
# multi class:
clf = svm.SVC(kernel="linear", C=0.1, decision_function_shape="ovo").fit(
iris.data, iris.target
)
dec = np.dot(iris.data, clf.coef_.T) + clf.intercept_
assert_array_almost_equal(dec, clf.decision_function(iris.data))
# binary:
clf.fit(X, Y)
dec = np.dot(X, clf.coef_.T) + clf.intercept_
prediction = clf.predict(X)
assert_array_almost_equal(dec.ravel(), clf.decision_function(X))
assert_array_almost_equal(
prediction, clf.classes_[(clf.decision_function(X) > 0).astype(int)]
)
expected = np.array([-1.0, -0.66, -1.0, 0.66, 1.0, 1.0])
assert_array_almost_equal(clf.decision_function(X), expected, 2)
# kernel binary:
clf = svm.SVC(kernel="rbf", gamma=1, decision_function_shape="ovo")
clf.fit(X, Y)
rbfs = rbf_kernel(X, clf.support_vectors_, gamma=clf.gamma)
dec = np.dot(rbfs, clf.dual_coef_.T) + clf.intercept_
assert_array_almost_equal(dec.ravel(), clf.decision_function(X))
@pytest.mark.parametrize("SVM", (svm.SVC, svm.NuSVC))
def test_decision_function_shape(SVM):
# check that decision_function_shape='ovr' or 'ovo' gives
# correct shape and is consistent with predict
clf = SVM(kernel="linear", decision_function_shape="ovr").fit(
iris.data, iris.target
)
dec = clf.decision_function(iris.data)
assert dec.shape == (len(iris.data), 3)
assert_array_equal(clf.predict(iris.data), np.argmax(dec, axis=1))
# with five classes:
X, y = make_blobs(n_samples=80, centers=5, random_state=0)
X_train, X_test, y_train, y_test = train_test_split(X, y, random_state=0)
clf = SVM(kernel="linear", decision_function_shape="ovr").fit(X_train, y_train)
dec = clf.decision_function(X_test)
assert dec.shape == (len(X_test), 5)
assert_array_equal(clf.predict(X_test), np.argmax(dec, axis=1))
# check shape of ovo_decition_function=True
clf = SVM(kernel="linear", decision_function_shape="ovo").fit(X_train, y_train)
dec = clf.decision_function(X_train)
assert dec.shape == (len(X_train), 10)
def test_svr_predict():
# Test SVR's decision_function
# Sanity check, test that predict implemented in python
# returns the same as the one in libsvm
X = iris.data
y = iris.target
# linear kernel
reg = svm.SVR(kernel="linear", C=0.1).fit(X, y)
dec = np.dot(X, reg.coef_.T) + reg.intercept_
assert_array_almost_equal(dec.ravel(), reg.predict(X).ravel())
# rbf kernel
reg = svm.SVR(kernel="rbf", gamma=1).fit(X, y)
rbfs = rbf_kernel(X, reg.support_vectors_, gamma=reg.gamma)
dec = np.dot(rbfs, reg.dual_coef_.T) + reg.intercept_
assert_array_almost_equal(dec.ravel(), reg.predict(X).ravel())
def test_weight():
# Test class weights
clf = svm.SVC(class_weight={1: 0.1})
# we give a small weights to class 1
clf.fit(X, Y)
# so all predicted values belong to class 2
assert_array_almost_equal(clf.predict(X), [2] * 6)
X_, y_ = make_classification(
n_samples=200, n_features=10, weights=[0.833, 0.167], random_state=2
)
for clf in (
linear_model.LogisticRegression(),
svm.LinearSVC(random_state=0),
svm.SVC(),
):
clf.set_params(class_weight={0: 0.1, 1: 10})
clf.fit(X_[:100], y_[:100])
y_pred = clf.predict(X_[100:])
assert f1_score(y_[100:], y_pred) > 0.3
@pytest.mark.parametrize("estimator", [svm.SVC(C=1e-2), svm.NuSVC()])
def test_svm_classifier_sided_sample_weight(estimator):
# fit a linear SVM and check that giving more weight to opposed samples
# in the space will flip the decision toward these samples.
X = [[-2, 0], [-1, -1], [0, -2], [0, 2], [1, 1], [2, 0]]
estimator.set_params(kernel="linear")
# check that with unit weights, a sample is supposed to be predicted on
# the boundary
sample_weight = [1] * 6
estimator.fit(X, Y, sample_weight=sample_weight)
y_pred = estimator.decision_function([[-1.0, 1.0]])
assert y_pred == pytest.approx(0)
# give more weights to opposed samples
sample_weight = [10.0, 0.1, 0.1, 0.1, 0.1, 10]
estimator.fit(X, Y, sample_weight=sample_weight)
y_pred = estimator.decision_function([[-1.0, 1.0]])
assert y_pred < 0
sample_weight = [1.0, 0.1, 10.0, 10.0, 0.1, 0.1]
estimator.fit(X, Y, sample_weight=sample_weight)
y_pred = estimator.decision_function([[-1.0, 1.0]])
assert y_pred > 0
@pytest.mark.parametrize("estimator", [svm.SVR(C=1e-2), svm.NuSVR(C=1e-2)])
def test_svm_regressor_sided_sample_weight(estimator):
# similar test to test_svm_classifier_sided_sample_weight but for
# SVM regressors
X = [[-2, 0], [-1, -1], [0, -2], [0, 2], [1, 1], [2, 0]]
estimator.set_params(kernel="linear")
# check that with unit weights, a sample is supposed to be predicted on
# the boundary
sample_weight = [1] * 6
estimator.fit(X, Y, sample_weight=sample_weight)
y_pred = estimator.predict([[-1.0, 1.0]])
assert y_pred == pytest.approx(1.5)
# give more weights to opposed samples
sample_weight = [10.0, 0.1, 0.1, 0.1, 0.1, 10]
estimator.fit(X, Y, sample_weight=sample_weight)
y_pred = estimator.predict([[-1.0, 1.0]])
assert y_pred < 1.5
sample_weight = [1.0, 0.1, 10.0, 10.0, 0.1, 0.1]
estimator.fit(X, Y, sample_weight=sample_weight)
y_pred = estimator.predict([[-1.0, 1.0]])
assert y_pred > 1.5
def test_svm_equivalence_sample_weight_C():
# test that rescaling all samples is the same as changing C
clf = svm.SVC()
clf.fit(X, Y)
dual_coef_no_weight = clf.dual_coef_
clf.set_params(C=100)
clf.fit(X, Y, sample_weight=np.repeat(0.01, len(X)))
assert_allclose(dual_coef_no_weight, clf.dual_coef_)
@pytest.mark.parametrize(
"Estimator, err_msg",
[
(svm.SVC, "Invalid input - all samples have zero or negative weights."),
(svm.NuSVC, "(negative dimensions are not allowed|nu is infeasible)"),
(svm.SVR, "Invalid input - all samples have zero or negative weights."),
(svm.NuSVR, "Invalid input - all samples have zero or negative weights."),
(svm.OneClassSVM, "Invalid input - all samples have zero or negative weights."),
],
ids=["SVC", "NuSVC", "SVR", "NuSVR", "OneClassSVM"],
)
@pytest.mark.parametrize(
"sample_weight",
[[0] * len(Y), [-0.3] * len(Y)],
ids=["weights-are-zero", "weights-are-negative"],
)
def test_negative_sample_weights_mask_all_samples(Estimator, err_msg, sample_weight):
est = Estimator(kernel="linear")
with pytest.raises(ValueError, match=err_msg):
est.fit(X, Y, sample_weight=sample_weight)
@pytest.mark.parametrize(
"Classifier, err_msg",
[
(
svm.SVC,
(
"Invalid input - all samples with positive weights belong to the same"
" class"
),
),
(svm.NuSVC, "specified nu is infeasible"),
],
ids=["SVC", "NuSVC"],
)
@pytest.mark.parametrize(
"sample_weight",
[[0, -0.5, 0, 1, 1, 1], [1, 1, 1, 0, -0.1, -0.3]],
ids=["mask-label-1", "mask-label-2"],
)
def test_negative_weights_svc_leave_just_one_label(Classifier, err_msg, sample_weight):
clf = Classifier(kernel="linear")
with pytest.raises(ValueError, match=err_msg):
clf.fit(X, Y, sample_weight=sample_weight)
@pytest.mark.parametrize(
"Classifier, model",
[
(svm.SVC, {"when-left": [0.3998, 0.4], "when-right": [0.4, 0.3999]}),
(svm.NuSVC, {"when-left": [0.3333, 0.3333], "when-right": [0.3333, 0.3333]}),
],
ids=["SVC", "NuSVC"],
)
@pytest.mark.parametrize(
"sample_weight, mask_side",
[([1, -0.5, 1, 1, 1, 1], "when-left"), ([1, 1, 1, 0, 1, 1], "when-right")],
ids=["partial-mask-label-1", "partial-mask-label-2"],
)
def test_negative_weights_svc_leave_two_labels(
Classifier, model, sample_weight, mask_side
):
clf = Classifier(kernel="linear")
clf.fit(X, Y, sample_weight=sample_weight)
assert_allclose(clf.coef_, [model[mask_side]], rtol=1e-3)
@pytest.mark.parametrize(
"Estimator", [svm.SVC, svm.NuSVC, svm.NuSVR], ids=["SVC", "NuSVC", "NuSVR"]
)
@pytest.mark.parametrize(
"sample_weight",
[[1, -0.5, 1, 1, 1, 1], [1, 1, 1, 0, 1, 1]],
ids=["partial-mask-label-1", "partial-mask-label-2"],
)
def test_negative_weight_equal_coeffs(Estimator, sample_weight):
# model generates equal coefficients
est = Estimator(kernel="linear")
est.fit(X, Y, sample_weight=sample_weight)
coef = np.abs(est.coef_).ravel()
assert coef[0] == pytest.approx(coef[1], rel=1e-3)
@ignore_warnings(category=UndefinedMetricWarning)
def test_auto_weight():
# Test class weights for imbalanced data
from sklearn.linear_model import LogisticRegression
# We take as dataset the two-dimensional projection of iris so
# that it is not separable and remove half of predictors from
# class 1.
# We add one to the targets as a non-regression test:
# class_weight="balanced"
# used to work only when the labels where a range [0..K).
from sklearn.utils import compute_class_weight
X, y = iris.data[:, :2], iris.target + 1
unbalanced = np.delete(np.arange(y.size), np.where(y > 2)[0][::2])
classes = np.unique(y[unbalanced])
class_weights = compute_class_weight("balanced", classes=classes, y=y[unbalanced])
assert np.argmax(class_weights) == 2
for clf in (
svm.SVC(kernel="linear"),
svm.LinearSVC(random_state=0),
LogisticRegression(),
):
# check that score is better when class='balanced' is set.
y_pred = clf.fit(X[unbalanced], y[unbalanced]).predict(X)
clf.set_params(class_weight="balanced")
y_pred_balanced = clf.fit(
X[unbalanced],
y[unbalanced],
).predict(X)
assert metrics.f1_score(y, y_pred, average="macro") <= metrics.f1_score(
y, y_pred_balanced, average="macro"
)
@pytest.mark.parametrize("lil_container", LIL_CONTAINERS)
def test_bad_input(lil_container):
# Test dimensions for labels
Y2 = Y[:-1] # wrong dimensions for labels
with pytest.raises(ValueError):
svm.SVC().fit(X, Y2)
# Test with arrays that are non-contiguous.
for clf in (svm.SVC(), svm.LinearSVC(random_state=0)):
Xf = np.asfortranarray(X)
assert not Xf.flags["C_CONTIGUOUS"]
yf = np.ascontiguousarray(np.tile(Y, (2, 1)).T)
yf = yf[:, -1]
assert not yf.flags["F_CONTIGUOUS"]
assert not yf.flags["C_CONTIGUOUS"]
clf.fit(Xf, yf)
assert_array_equal(clf.predict(T), true_result)
# error for precomputed kernelsx
clf = svm.SVC(kernel="precomputed")
with pytest.raises(ValueError):
clf.fit(X, Y)
# predict with sparse input when trained with dense
clf = svm.SVC().fit(X, Y)
with pytest.raises(ValueError):
clf.predict(lil_container(X))
Xt = np.array(X).T
clf.fit(np.dot(X, Xt), Y)
with pytest.raises(ValueError):
clf.predict(X)
clf = svm.SVC()
clf.fit(X, Y)
with pytest.raises(ValueError):
clf.predict(Xt)
def test_svc_nonfinite_params():
# Check SVC throws ValueError when dealing with non-finite parameter values
rng = np.random.RandomState(0)
n_samples = 10
fmax = np.finfo(np.float64).max
X = fmax * rng.uniform(size=(n_samples, 2))
y = rng.randint(0, 2, size=n_samples)
clf = svm.SVC()
msg = "The dual coefficients or intercepts are not finite"
with pytest.raises(ValueError, match=msg):
clf.fit(X, y)
def test_unicode_kernel():
# Test that a unicode kernel name does not cause a TypeError
clf = svm.SVC(kernel="linear", probability=True)
clf.fit(X, Y)
clf.predict_proba(T)
_libsvm.cross_validation(
iris.data, iris.target.astype(np.float64), 5, kernel="linear", random_seed=0
)
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
def test_sparse_precomputed(csr_container):
clf = svm.SVC(kernel="precomputed")
sparse_gram = csr_container([[1, 0], [0, 1]])
with pytest.raises(TypeError, match="Sparse precomputed"):
clf.fit(sparse_gram, [0, 1])
@pytest.mark.parametrize("csr_container", CSR_CONTAINERS)
def test_sparse_fit_support_vectors_empty(csr_container):
# Regression test for #14893
X_train = csr_container([[0, 1, 0, 0], [0, 0, 0, 1], [0, 0, 1, 0], [0, 0, 0, 1]])
y_train = np.array([0.04, 0.04, 0.10, 0.16])
model = svm.SVR(kernel="linear")
model.fit(X_train, y_train)
assert not model.support_vectors_.data.size
assert not model.dual_coef_.data.size
@pytest.mark.parametrize("loss", ["hinge", "squared_hinge"])
@pytest.mark.parametrize("penalty", ["l1", "l2"])
@pytest.mark.parametrize("dual", [True, False])
def test_linearsvc_parameters(loss, penalty, dual):
# Test possible parameter combinations in LinearSVC
# Generate list of possible parameter combinations
X, y = make_classification(n_samples=5, n_features=5, random_state=0)
clf = svm.LinearSVC(penalty=penalty, loss=loss, dual=dual, random_state=0)
if (
(loss, penalty) == ("hinge", "l1")
or (loss, penalty, dual) == ("hinge", "l2", False)
or (penalty, dual) == ("l1", True)
):
with pytest.raises(
ValueError,
match="Unsupported set of arguments.*penalty='%s.*loss='%s.*dual=%s"
% (penalty, loss, dual),
):
clf.fit(X, y)
else:
clf.fit(X, y)
def test_linearsvc():
# Test basic routines using LinearSVC
clf = svm.LinearSVC(random_state=0).fit(X, Y)
# by default should have intercept
assert clf.fit_intercept
assert_array_equal(clf.predict(T), true_result)
assert_array_almost_equal(clf.intercept_, [0], decimal=3)
# the same with l1 penalty
clf = svm.LinearSVC(
penalty="l1", loss="squared_hinge", dual=False, random_state=0
).fit(X, Y)
assert_array_equal(clf.predict(T), true_result)
# l2 penalty with dual formulation
clf = svm.LinearSVC(penalty="l2", dual=True, random_state=0).fit(X, Y)
assert_array_equal(clf.predict(T), true_result)
# l2 penalty, l1 loss
clf = svm.LinearSVC(penalty="l2", loss="hinge", dual=True, random_state=0)
clf.fit(X, Y)
assert_array_equal(clf.predict(T), true_result)
# test also decision function
dec = clf.decision_function(T)
res = (dec > 0).astype(int) + 1
assert_array_equal(res, true_result)
def test_linearsvc_crammer_singer():
# Test LinearSVC with crammer_singer multi-class svm
ovr_clf = svm.LinearSVC(random_state=0).fit(iris.data, iris.target)
cs_clf = svm.LinearSVC(multi_class="crammer_singer", random_state=0)
cs_clf.fit(iris.data, iris.target)
# similar prediction for ovr and crammer-singer:
assert (ovr_clf.predict(iris.data) == cs_clf.predict(iris.data)).mean() > 0.9
# classifiers shouldn't be the same
assert (ovr_clf.coef_ != cs_clf.coef_).all()
# test decision function
assert_array_equal(
cs_clf.predict(iris.data),
np.argmax(cs_clf.decision_function(iris.data), axis=1),
)
dec_func = np.dot(iris.data, cs_clf.coef_.T) + cs_clf.intercept_
assert_array_almost_equal(dec_func, cs_clf.decision_function(iris.data))
def test_linearsvc_fit_sampleweight():
# check correct result when sample_weight is 1
n_samples = len(X)
unit_weight = np.ones(n_samples)
clf = svm.LinearSVC(random_state=0).fit(X, Y)
clf_unitweight = svm.LinearSVC(random_state=0, tol=1e-12, max_iter=1000).fit(
X, Y, sample_weight=unit_weight
)
# check if same as sample_weight=None
assert_array_equal(clf_unitweight.predict(T), clf.predict(T))
assert_allclose(clf.coef_, clf_unitweight.coef_, 1, 0.0001)
# check that fit(X) = fit([X1, X2, X3],sample_weight = [n1, n2, n3]) where
# X = X1 repeated n1 times, X2 repeated n2 times and so forth
random_state = check_random_state(0)
random_weight = random_state.randint(0, 10, n_samples)
lsvc_unflat = svm.LinearSVC(random_state=0, tol=1e-12, max_iter=1000).fit(
X, Y, sample_weight=random_weight
)
pred1 = lsvc_unflat.predict(T)
X_flat = np.repeat(X, random_weight, axis=0)
y_flat = np.repeat(Y, random_weight, axis=0)
lsvc_flat = svm.LinearSVC(random_state=0, tol=1e-12, max_iter=1000).fit(
X_flat, y_flat
)
pred2 = lsvc_flat.predict(T)
assert_array_equal(pred1, pred2)
assert_allclose(lsvc_unflat.coef_, lsvc_flat.coef_, 1, 0.0001)
def test_crammer_singer_binary():
# Test Crammer-Singer formulation in the binary case
X, y = make_classification(n_classes=2, random_state=0)
for fit_intercept in (True, False):
acc = (
svm.LinearSVC(
fit_intercept=fit_intercept,
multi_class="crammer_singer",
random_state=0,
)
.fit(X, y)
.score(X, y)
)
assert acc > 0.9
def test_linearsvc_iris():
# Test that LinearSVC gives plausible predictions on the iris dataset
# Also, test symbolic class names (classes_).
target = iris.target_names[iris.target]
clf = svm.LinearSVC(random_state=0).fit(iris.data, target)
assert set(clf.classes_) == set(iris.target_names)
assert np.mean(clf.predict(iris.data) == target) > 0.8
dec = clf.decision_function(iris.data)
pred = iris.target_names[np.argmax(dec, 1)]
assert_array_equal(pred, clf.predict(iris.data))
def test_dense_liblinear_intercept_handling(classifier=svm.LinearSVC):
# Test that dense liblinear honours intercept_scaling param
X = [[2, 1], [3, 1], [1, 3], [2, 3]]
y = [0, 0, 1, 1]
clf = classifier(
fit_intercept=True,
penalty="l1",
loss="squared_hinge",
dual=False,
C=4,
tol=1e-7,
random_state=0,
)
assert clf.intercept_scaling == 1, clf.intercept_scaling
assert clf.fit_intercept
# when intercept_scaling is low the intercept value is highly "penalized"
# by regularization
clf.intercept_scaling = 1
clf.fit(X, y)
assert_almost_equal(clf.intercept_, 0, decimal=5)
# when intercept_scaling is sufficiently high, the intercept value
# is not affected by regularization
clf.intercept_scaling = 100
clf.fit(X, y)
intercept1 = clf.intercept_
assert intercept1 < -1
# when intercept_scaling is sufficiently high, the intercept value
# doesn't depend on intercept_scaling value
clf.intercept_scaling = 1000
clf.fit(X, y)
intercept2 = clf.intercept_
assert_array_almost_equal(intercept1, intercept2, decimal=2)
def test_liblinear_set_coef():
# multi-class case
clf = svm.LinearSVC().fit(iris.data, iris.target)
values = clf.decision_function(iris.data)
clf.coef_ = clf.coef_.copy()
clf.intercept_ = clf.intercept_.copy()
values2 = clf.decision_function(iris.data)
assert_array_almost_equal(values, values2)
# binary-class case
X = [[2, 1], [3, 1], [1, 3], [2, 3]]
y = [0, 0, 1, 1]
clf = svm.LinearSVC().fit(X, y)
values = clf.decision_function(X)
clf.coef_ = clf.coef_.copy()
clf.intercept_ = clf.intercept_.copy()
values2 = clf.decision_function(X)
assert_array_equal(values, values2)
def test_immutable_coef_property():
# Check that primal coef modification are not silently ignored
svms = [
svm.SVC(kernel="linear").fit(iris.data, iris.target),
svm.NuSVC(kernel="linear").fit(iris.data, iris.target),
svm.SVR(kernel="linear").fit(iris.data, iris.target),
svm.NuSVR(kernel="linear").fit(iris.data, iris.target),
svm.OneClassSVM(kernel="linear").fit(iris.data),
]
for clf in svms:
with pytest.raises(AttributeError):
clf.__setattr__("coef_", np.arange(3))
with pytest.raises((RuntimeError, ValueError)):
clf.coef_.__setitem__((0, 0), 0)
def test_linearsvc_verbose():
# stdout: redirect
import os
stdout = os.dup(1) # save original stdout
os.dup2(os.pipe()[1], 1) # replace it
# actual call
clf = svm.LinearSVC(verbose=1)
clf.fit(X, Y)
# stdout: restore
os.dup2(stdout, 1) # restore original stdout
def test_svc_clone_with_callable_kernel():
# create SVM with callable linear kernel, check that results are the same
# as with built-in linear kernel
svm_callable = svm.SVC(
kernel=lambda x, y: np.dot(x, y.T),
probability=True,
random_state=0,
decision_function_shape="ovr",
)
# clone for checking clonability with lambda functions..
svm_cloned = base.clone(svm_callable)
svm_cloned.fit(iris.data, iris.target)
svm_builtin = svm.SVC(
kernel="linear", probability=True, random_state=0, decision_function_shape="ovr"
)
svm_builtin.fit(iris.data, iris.target)
assert_array_almost_equal(svm_cloned.dual_coef_, svm_builtin.dual_coef_)
assert_array_almost_equal(svm_cloned.intercept_, svm_builtin.intercept_)
assert_array_equal(svm_cloned.predict(iris.data), svm_builtin.predict(iris.data))
assert_array_almost_equal(
svm_cloned.predict_proba(iris.data),
svm_builtin.predict_proba(iris.data),
decimal=4,
)
assert_array_almost_equal(
svm_cloned.decision_function(iris.data),
svm_builtin.decision_function(iris.data),
)
def test_svc_bad_kernel():
svc = svm.SVC(kernel=lambda x, y: x)
with pytest.raises(ValueError):
svc.fit(X, Y)
def test_libsvm_convergence_warnings():
a = svm.SVC(
kernel=lambda x, y: np.dot(x, y.T), probability=True, random_state=0, max_iter=2
)
warning_msg = (
r"Solver terminated early \(max_iter=2\). Consider pre-processing "
r"your data with StandardScaler or MinMaxScaler."
)
with pytest.warns(ConvergenceWarning, match=warning_msg):
a.fit(np.array(X), Y)
assert np.all(a.n_iter_ == 2)
def test_unfitted():
X = "foo!" # input validation not required when SVM not fitted
clf = svm.SVC()
with pytest.raises(Exception, match=r".*\bSVC\b.*\bnot\b.*\bfitted\b"):
clf.predict(X)
clf = svm.NuSVR()
with pytest.raises(Exception, match=r".*\bNuSVR\b.*\bnot\b.*\bfitted\b"):
clf.predict(X)
# ignore convergence warnings from max_iter=1
@ignore_warnings
def test_consistent_proba():
a = svm.SVC(probability=True, max_iter=1, random_state=0)
proba_1 = a.fit(X, Y).predict_proba(X)
a = svm.SVC(probability=True, max_iter=1, random_state=0)
proba_2 = a.fit(X, Y).predict_proba(X)
assert_array_almost_equal(proba_1, proba_2)
def test_linear_svm_convergence_warnings():
# Test that warnings are raised if model does not converge
lsvc = svm.LinearSVC(random_state=0, max_iter=2)
warning_msg = "Liblinear failed to converge, increase the number of iterations."
with pytest.warns(ConvergenceWarning, match=warning_msg):
lsvc.fit(X, Y)
# Check that we have an n_iter_ attribute with int type as opposed to a
# numpy array or an np.int32 so as to match the docstring.
assert isinstance(lsvc.n_iter_, int)
assert lsvc.n_iter_ == 2
lsvr = svm.LinearSVR(random_state=0, max_iter=2)
with pytest.warns(ConvergenceWarning, match=warning_msg):
lsvr.fit(iris.data, iris.target)
assert isinstance(lsvr.n_iter_, int)
assert lsvr.n_iter_ == 2
def test_svr_coef_sign():
# Test that SVR(kernel="linear") has coef_ with the right sign.
# Non-regression test for #2933.
X = np.random.RandomState(21).randn(10, 3)
y = np.random.RandomState(12).randn(10)
for svr in [
svm.SVR(kernel="linear"),
svm.NuSVR(kernel="linear"),
svm.LinearSVR(),
]:
svr.fit(X, y)
assert_array_almost_equal(
svr.predict(X), np.dot(X, svr.coef_.ravel()) + svr.intercept_
)
def test_lsvc_intercept_scaling_zero():
# Test that intercept_scaling is ignored when fit_intercept is False
lsvc = svm.LinearSVC(fit_intercept=False)
lsvc.fit(X, Y)
assert lsvc.intercept_ == 0.0
def test_hasattr_predict_proba():
# Method must be (un)available before or after fit, switched by
# `probability` param
G = svm.SVC(probability=True)
assert hasattr(G, "predict_proba")
G.fit(iris.data, iris.target)
assert hasattr(G, "predict_proba")
G = svm.SVC(probability=False)
assert not hasattr(G, "predict_proba")
G.fit(iris.data, iris.target)
assert not hasattr(G, "predict_proba")
# Switching to `probability=True` after fitting should make
# predict_proba available, but calling it must not work:
G.probability = True
assert hasattr(G, "predict_proba")
msg = "predict_proba is not available when fitted with probability=False"
with pytest.raises(NotFittedError, match=msg):
G.predict_proba(iris.data)
def test_decision_function_shape_two_class():
for n_classes in [2, 3]:
X, y = make_blobs(centers=n_classes, random_state=0)
for estimator in [svm.SVC, svm.NuSVC]:
clf = OneVsRestClassifier(estimator(decision_function_shape="ovr")).fit(
X, y
)
assert len(clf.predict(X)) == len(y)
def test_ovr_decision_function():
# One point from each quadrant represents one class
X_train = np.array([[1, 1], [-1, 1], [-1, -1], [1, -1]])
y_train = [0, 1, 2, 3]
# First point is closer to the decision boundaries than the second point
base_points = np.array([[5, 5], [10, 10]])
# For all the quadrants (classes)
X_test = np.vstack(
(
base_points * [1, 1], # Q1
base_points * [-1, 1], # Q2
base_points * [-1, -1], # Q3
base_points * [1, -1], # Q4
)
)
y_test = [0] * 2 + [1] * 2 + [2] * 2 + [3] * 2
clf = svm.SVC(kernel="linear", decision_function_shape="ovr")
clf.fit(X_train, y_train)
y_pred = clf.predict(X_test)
# Test if the prediction is the same as y
assert_array_equal(y_pred, y_test)
deci_val = clf.decision_function(X_test)
# Assert that the predicted class has the maximum value
assert_array_equal(np.argmax(deci_val, axis=1), y_pred)
# Get decision value at test points for the predicted class
pred_class_deci_val = deci_val[range(8), y_pred].reshape((4, 2))
# Assert pred_class_deci_val > 0 here
assert np.min(pred_class_deci_val) > 0.0
# Test if the first point has lower decision value on every quadrant
# compared to the second point
assert np.all(pred_class_deci_val[:, 0] < pred_class_deci_val[:, 1])
@pytest.mark.parametrize("SVCClass", [svm.SVC, svm.NuSVC])
def test_svc_invalid_break_ties_param(SVCClass):
X, y = make_blobs(random_state=42)
svm = SVCClass(
kernel="linear", decision_function_shape="ovo", break_ties=True, random_state=42
).fit(X, y)
with pytest.raises(ValueError, match="break_ties must be False"):
svm.predict(y)
@pytest.mark.parametrize("SVCClass", [svm.SVC, svm.NuSVC])
def test_svc_ovr_tie_breaking(SVCClass):
"""Test if predict breaks ties in OVR mode.
Related issue: https://github.com/scikit-learn/scikit-learn/issues/8277
"""
X, y = make_blobs(random_state=0, n_samples=20, n_features=2)
xs = np.linspace(X[:, 0].min(), X[:, 0].max(), 100)
ys = np.linspace(X[:, 1].min(), X[:, 1].max(), 100)
xx, yy = np.meshgrid(xs, ys)
common_params = dict(
kernel="rbf", gamma=1e6, random_state=42, decision_function_shape="ovr"
)
svm = SVCClass(
break_ties=False,
**common_params,
).fit(X, y)
pred = svm.predict(np.c_[xx.ravel(), yy.ravel()])
dv = svm.decision_function(np.c_[xx.ravel(), yy.ravel()])
assert not np.all(pred == np.argmax(dv, axis=1))
svm = SVCClass(
break_ties=True,
**common_params,
).fit(X, y)
pred = svm.predict(np.c_[xx.ravel(), yy.ravel()])
dv = svm.decision_function(np.c_[xx.ravel(), yy.ravel()])
assert np.all(pred == np.argmax(dv, axis=1))
def test_gamma_scale():
X, y = [[0.0], [1.0]], [0, 1]
clf = svm.SVC()
clf.fit(X, y)
assert_almost_equal(clf._gamma, 4)
@pytest.mark.parametrize(
"SVM, params",
[
(LinearSVC, {"penalty": "l1", "loss": "squared_hinge", "dual": False}),
(LinearSVC, {"penalty": "l2", "loss": "squared_hinge", "dual": True}),
(LinearSVC, {"penalty": "l2", "loss": "squared_hinge", "dual": False}),
(LinearSVC, {"penalty": "l2", "loss": "hinge", "dual": True}),
(LinearSVR, {"loss": "epsilon_insensitive", "dual": True}),
(LinearSVR, {"loss": "squared_epsilon_insensitive", "dual": True}),
(LinearSVR, {"loss": "squared_epsilon_insensitive", "dual": True}),
],
)
def test_linearsvm_liblinear_sample_weight(SVM, params):
X = np.array(
[
[1, 3],
[1, 3],
[1, 3],
[1, 3],
[2, 1],
[2, 1],
[2, 1],
[2, 1],
[3, 3],
[3, 3],
[3, 3],
[3, 3],
[4, 1],
[4, 1],
[4, 1],
[4, 1],
],
dtype=np.dtype("float"),
)
y = np.array(
[1, 1, 1, 1, 2, 2, 2, 2, 1, 1, 1, 1, 2, 2, 2, 2], dtype=np.dtype("int")
)
X2 = np.vstack([X, X])
y2 = np.hstack([y, 3 - y])
sample_weight = np.ones(shape=len(y) * 2)
sample_weight[len(y) :] = 0
X2, y2, sample_weight = shuffle(X2, y2, sample_weight, random_state=0)
base_estimator = SVM(random_state=42)
base_estimator.set_params(**params)
base_estimator.set_params(tol=1e-12, max_iter=1000)
est_no_weight = base.clone(base_estimator).fit(X, y)
est_with_weight = base.clone(base_estimator).fit(
X2, y2, sample_weight=sample_weight
)
for method in ("predict", "decision_function"):
if hasattr(base_estimator, method):
X_est_no_weight = getattr(est_no_weight, method)(X)
X_est_with_weight = getattr(est_with_weight, method)(X)
assert_allclose(X_est_no_weight, X_est_with_weight)
@pytest.mark.parametrize("Klass", (OneClassSVM, SVR, NuSVR))
def test_n_support(Klass):
# Make n_support is correct for oneclass and SVR (used to be
# non-initialized)
# this is a non regression test for issue #14774
X = np.array([[0], [0.44], [0.45], [0.46], [1]])
y = np.arange(X.shape[0])
est = Klass()
assert not hasattr(est, "n_support_")
est.fit(X, y)
assert est.n_support_[0] == est.support_vectors_.shape[0]
assert est.n_support_.size == 1
@pytest.mark.parametrize("Estimator", [svm.SVC, svm.SVR])
def test_custom_kernel_not_array_input(Estimator):
"""Test using a custom kernel that is not fed with array-like for floats"""
data = ["A A", "A", "B", "B B", "A B"]
X = np.array([[2, 0], [1, 0], [0, 1], [0, 2], [1, 1]]) # count encoding
y = np.array([1, 1, 2, 2, 1])
def string_kernel(X1, X2):
assert isinstance(X1[0], str)
n_samples1 = _num_samples(X1)
n_samples2 = _num_samples(X2)
K = np.zeros((n_samples1, n_samples2))
for ii in range(n_samples1):
for jj in range(ii, n_samples2):
K[ii, jj] = X1[ii].count("A") * X2[jj].count("A")
K[ii, jj] += X1[ii].count("B") * X2[jj].count("B")
K[jj, ii] = K[ii, jj]
return K
K = string_kernel(data, data)
assert_array_equal(np.dot(X, X.T), K)
svc1 = Estimator(kernel=string_kernel).fit(data, y)
svc2 = Estimator(kernel="linear").fit(X, y)
svc3 = Estimator(kernel="precomputed").fit(K, y)
assert svc1.score(data, y) == svc3.score(K, y)
assert svc1.score(data, y) == svc2.score(X, y)
if hasattr(svc1, "decision_function"): # classifier
assert_allclose(svc1.decision_function(data), svc2.decision_function(X))
assert_allclose(svc1.decision_function(data), svc3.decision_function(K))
assert_array_equal(svc1.predict(data), svc2.predict(X))
assert_array_equal(svc1.predict(data), svc3.predict(K))
else: # regressor
assert_allclose(svc1.predict(data), svc2.predict(X))
assert_allclose(svc1.predict(data), svc3.predict(K))
def test_svc_raises_error_internal_representation():
"""Check that SVC raises error when internal representation is altered.
Non-regression test for #18891 and https://nvd.nist.gov/vuln/detail/CVE-2020-28975
"""
clf = svm.SVC(kernel="linear").fit(X, Y)
clf._n_support[0] = 1000000
msg = "The internal representation of SVC was altered"
with pytest.raises(ValueError, match=msg):
clf.predict(X)
@pytest.mark.parametrize(
"estimator, expected_n_iter_type",
[
(svm.SVC, np.ndarray),
(svm.NuSVC, np.ndarray),
(svm.SVR, int),
(svm.NuSVR, int),
(svm.OneClassSVM, int),
],
)
@pytest.mark.parametrize(
"dataset",
[
make_classification(n_classes=2, n_informative=2, random_state=0),
make_classification(n_classes=3, n_informative=3, random_state=0),
make_classification(n_classes=4, n_informative=4, random_state=0),
],
)
def test_n_iter_libsvm(estimator, expected_n_iter_type, dataset):
# Check that the type of n_iter_ is correct for the classes that inherit
# from BaseSVC.
# Note that for SVC, and NuSVC this is an ndarray; while for SVR, NuSVR, and
# OneClassSVM, it is an int.
# For SVC and NuSVC also check the shape of n_iter_.
X, y = dataset
n_iter = estimator(kernel="linear").fit(X, y).n_iter_
assert type(n_iter) == expected_n_iter_type
if estimator in [svm.SVC, svm.NuSVC]:
n_classes = len(np.unique(y))
assert n_iter.shape == (n_classes * (n_classes - 1) // 2,)
@pytest.mark.parametrize("loss", ["squared_hinge", "squared_epsilon_insensitive"])
def test_dual_auto(loss):
# OvR, L2, N > M (6,2)
dual = _validate_dual_parameter("auto", loss, "l2", "ovr", np.asarray(X))
assert dual is False
# OvR, L2, N < M (2,6)
dual = _validate_dual_parameter("auto", loss, "l2", "ovr", np.asarray(X).T)
assert dual is True
def test_dual_auto_edge_cases():
# Hinge, OvR, L2, N > M (6,2)
dual = _validate_dual_parameter("auto", "hinge", "l2", "ovr", np.asarray(X))
assert dual is True # only supports True
dual = _validate_dual_parameter(
"auto", "epsilon_insensitive", "l2", "ovr", np.asarray(X)
)
assert dual is True # only supports True
# SqHinge, OvR, L1, N < M (2,6)
dual = _validate_dual_parameter(
"auto", "squared_hinge", "l1", "ovr", np.asarray(X).T
)
assert dual is False # only supports False