3RNN/Lib/site-packages/scipy/sparse/_dok.py
2024-05-26 19:49:15 +02:00

673 lines
22 KiB
Python

"""Dictionary Of Keys based matrix"""
__docformat__ = "restructuredtext en"
__all__ = ['dok_array', 'dok_matrix', 'isspmatrix_dok']
import itertools
import numpy as np
from ._matrix import spmatrix
from ._base import _spbase, sparray, issparse
from ._index import IndexMixin
from ._sputils import (isdense, getdtype, isshape, isintlike, isscalarlike,
upcast, upcast_scalar, check_shape)
class _dok_base(_spbase, IndexMixin, dict):
_format = 'dok'
def __init__(self, arg1, shape=None, dtype=None, copy=False):
_spbase.__init__(self)
is_array = isinstance(self, sparray)
if isinstance(arg1, tuple) and isshape(arg1, allow_1d=is_array):
self._shape = check_shape(arg1, allow_1d=is_array)
self._dict = {}
self.dtype = getdtype(dtype, default=float)
elif issparse(arg1): # Sparse ctor
if arg1.format == self.format:
arg1 = arg1.copy() if copy else arg1
else:
arg1 = arg1.todok()
if dtype is not None:
arg1 = arg1.astype(dtype, copy=False)
self._dict = arg1._dict
self._shape = check_shape(arg1.shape, allow_1d=is_array)
self.dtype = arg1.dtype
else: # Dense ctor
try:
arg1 = np.asarray(arg1)
except Exception as e:
raise TypeError('Invalid input format.') from e
if arg1.ndim > 2:
raise TypeError('Expected rank <=2 dense array or matrix.')
if arg1.ndim == 1:
if dtype is not None:
arg1 = arg1.astype(dtype)
self._dict = {i: v for i, v in enumerate(arg1) if v != 0}
self.dtype = arg1.dtype
else:
d = self._coo_container(arg1, dtype=dtype).todok()
self._dict = d._dict
self.dtype = d.dtype
self._shape = check_shape(arg1.shape, allow_1d=is_array)
def update(self, val):
# Prevent direct usage of update
raise NotImplementedError("Direct update to DOK sparse format is not allowed.")
def _getnnz(self, axis=None):
if axis is not None:
raise NotImplementedError(
"_getnnz over an axis is not implemented for DOK format."
)
return len(self._dict)
def count_nonzero(self):
return sum(x != 0 for x in self.values())
_getnnz.__doc__ = _spbase._getnnz.__doc__
count_nonzero.__doc__ = _spbase.count_nonzero.__doc__
def __len__(self):
return len(self._dict)
def __contains__(self, key):
return key in self._dict
def setdefault(self, key, default=None, /):
return self._dict.setdefault(key, default)
def __delitem__(self, key, /):
del self._dict[key]
def clear(self):
return self._dict.clear()
def pop(self, /, *args):
return self._dict.pop(*args)
def __reversed__(self):
raise TypeError("reversed is not defined for dok_array type")
def __or__(self, other):
type_names = f"{type(self).__name__} and {type(other).__name__}"
raise TypeError(f"unsupported operand type for |: {type_names}")
def __ror__(self, other):
type_names = f"{type(self).__name__} and {type(other).__name__}"
raise TypeError(f"unsupported operand type for |: {type_names}")
def __ior__(self, other):
type_names = f"{type(self).__name__} and {type(other).__name__}"
raise TypeError(f"unsupported operand type for |: {type_names}")
def popitem(self):
return self._dict.popitem()
def items(self):
return self._dict.items()
def keys(self):
return self._dict.keys()
def values(self):
return self._dict.values()
def get(self, key, default=0.0):
"""This provides dict.get method functionality with type checking"""
if key in self._dict:
return self._dict[key]
if isintlike(key) and self.ndim == 1:
key = (key,)
if self.ndim != len(key):
raise IndexError(f'Index {key} length needs to match self.shape')
try:
for i in key:
assert isintlike(i)
except (AssertionError, TypeError, ValueError) as e:
raise IndexError('Index must be or consist of integers.') from e
key = tuple(i + M if i < 0 else i for i, M in zip(key, self.shape))
if any(i < 0 or i >= M for i, M in zip(key, self.shape)):
raise IndexError('Index out of bounds.')
if self.ndim == 1:
key = key[0]
return self._dict.get(key, default)
# override IndexMixin.__getitem__ for 1d case until fully implemented
def __getitem__(self, key):
if self.ndim == 2:
return super().__getitem__(key)
if isinstance(key, tuple) and len(key) == 1:
key = key[0]
INT_TYPES = (int, np.integer)
if isinstance(key, INT_TYPES):
if key < 0:
key += self.shape[-1]
if key < 0 or key >= self.shape[-1]:
raise IndexError('index value out of bounds')
return self._get_int(key)
else:
raise IndexError('array/slice index for 1d dok_array not yet supported')
# 1D get methods
def _get_int(self, idx):
return self._dict.get(idx, self.dtype.type(0))
# 2D get methods
def _get_intXint(self, row, col):
return self._dict.get((row, col), self.dtype.type(0))
def _get_intXslice(self, row, col):
return self._get_sliceXslice(slice(row, row + 1), col)
def _get_sliceXint(self, row, col):
return self._get_sliceXslice(row, slice(col, col + 1))
def _get_sliceXslice(self, row, col):
row_start, row_stop, row_step = row.indices(self.shape[0])
col_start, col_stop, col_step = col.indices(self.shape[1])
row_range = range(row_start, row_stop, row_step)
col_range = range(col_start, col_stop, col_step)
shape = (len(row_range), len(col_range))
# Switch paths only when advantageous
# (count the iterations in the loops, adjust for complexity)
if len(self) >= 2 * shape[0] * shape[1]:
# O(nr*nc) path: loop over <row x col>
return self._get_columnXarray(row_range, col_range)
# O(nnz) path: loop over entries of self
newdok = self._dok_container(shape, dtype=self.dtype)
for key in self.keys():
i, ri = divmod(int(key[0]) - row_start, row_step)
if ri != 0 or i < 0 or i >= shape[0]:
continue
j, rj = divmod(int(key[1]) - col_start, col_step)
if rj != 0 or j < 0 or j >= shape[1]:
continue
newdok._dict[i, j] = self._dict[key]
return newdok
def _get_intXarray(self, row, col):
col = col.squeeze()
return self._get_columnXarray([row], col)
def _get_arrayXint(self, row, col):
row = row.squeeze()
return self._get_columnXarray(row, [col])
def _get_sliceXarray(self, row, col):
row = list(range(*row.indices(self.shape[0])))
return self._get_columnXarray(row, col)
def _get_arrayXslice(self, row, col):
col = list(range(*col.indices(self.shape[1])))
return self._get_columnXarray(row, col)
def _get_columnXarray(self, row, col):
# outer indexing
newdok = self._dok_container((len(row), len(col)), dtype=self.dtype)
for i, r in enumerate(row):
for j, c in enumerate(col):
v = self._dict.get((r, c), 0)
if v:
newdok._dict[i, j] = v
return newdok
def _get_arrayXarray(self, row, col):
# inner indexing
i, j = map(np.atleast_2d, np.broadcast_arrays(row, col))
newdok = self._dok_container(i.shape, dtype=self.dtype)
for key in itertools.product(range(i.shape[0]), range(i.shape[1])):
v = self._dict.get((i[key], j[key]), 0)
if v:
newdok._dict[key] = v
return newdok
# override IndexMixin.__setitem__ for 1d case until fully implemented
def __setitem__(self, key, value):
if self.ndim == 2:
return super().__setitem__(key, value)
if isinstance(key, tuple) and len(key) == 1:
key = key[0]
INT_TYPES = (int, np.integer)
if isinstance(key, INT_TYPES):
if key < 0:
key += self.shape[-1]
if key < 0 or key >= self.shape[-1]:
raise IndexError('index value out of bounds')
return self._set_int(key, value)
else:
raise IndexError('array index for 1d dok_array not yet provided')
# 1D set methods
def _set_int(self, idx, x):
if x:
self._dict[idx] = x
elif idx in self._dict:
del self._dict[idx]
# 2D set methods
def _set_intXint(self, row, col, x):
key = (row, col)
if x:
self._dict[key] = x
elif key in self._dict:
del self._dict[key]
def _set_arrayXarray(self, row, col, x):
row = list(map(int, row.ravel()))
col = list(map(int, col.ravel()))
x = x.ravel()
self._dict.update(zip(zip(row, col), x))
for i in np.nonzero(x == 0)[0]:
key = (row[i], col[i])
if self._dict[key] == 0:
# may have been superseded by later update
del self._dict[key]
def __add__(self, other):
if isscalarlike(other):
res_dtype = upcast_scalar(self.dtype, other)
new = self._dok_container(self.shape, dtype=res_dtype)
# Add this scalar to each element.
for key in itertools.product(*[range(d) for d in self.shape]):
aij = self._dict.get(key, 0) + other
if aij:
new[key] = aij
elif issparse(other):
if other.shape != self.shape:
raise ValueError("Matrix dimensions are not equal.")
res_dtype = upcast(self.dtype, other.dtype)
new = self._dok_container(self.shape, dtype=res_dtype)
new._dict = self._dict.copy()
if other.format == "dok":
o_items = other.items()
else:
other = other.tocoo()
if self.ndim == 1:
o_items = zip(other.coords[0], other.data)
else:
o_items = zip(zip(*other.coords), other.data)
with np.errstate(over='ignore'):
new._dict.update((k, new[k] + v) for k, v in o_items)
elif isdense(other):
new = self.todense() + other
else:
return NotImplemented
return new
def __radd__(self, other):
return self + other # addition is comutative
def __neg__(self):
if self.dtype.kind == 'b':
raise NotImplementedError(
'Negating a sparse boolean matrix is not supported.'
)
new = self._dok_container(self.shape, dtype=self.dtype)
new._dict.update((k, -v) for k, v in self.items())
return new
def _mul_scalar(self, other):
res_dtype = upcast_scalar(self.dtype, other)
# Multiply this scalar by every element.
new = self._dok_container(self.shape, dtype=res_dtype)
new._dict.update(((k, v * other) for k, v in self.items()))
return new
def _matmul_vector(self, other):
res_dtype = upcast(self.dtype, other.dtype)
# vector @ vector
if self.ndim == 1:
if issparse(other):
if other.format == "dok":
keys = self.keys() & other.keys()
else:
keys = self.keys() & other.tocoo().coords[0]
return res_dtype(sum(self._dict[k] * other._dict[k] for k in keys))
elif isdense(other):
return res_dtype(sum(other[k] * v for k, v in self.items()))
else:
return NotImplemented
# matrix @ vector
result = np.zeros(self.shape[0], dtype=res_dtype)
for (i, j), v in self.items():
result[i] += v * other[j]
return result
def _matmul_multivector(self, other):
result_dtype = upcast(self.dtype, other.dtype)
# vector @ multivector
if self.ndim == 1:
# works for other 1d or 2d
return sum(v * other[j] for j, v in self._dict.items())
# matrix @ multivector
M = self.shape[0]
new_shape = (M,) if other.ndim == 1 else (M, other.shape[1])
result = np.zeros(new_shape, dtype=result_dtype)
for (i, j), v in self.items():
result[i] += v * other[j]
return result
def __imul__(self, other):
if isscalarlike(other):
self._dict.update((k, v * other) for k, v in self.items())
return self
return NotImplemented
def __truediv__(self, other):
if isscalarlike(other):
res_dtype = upcast_scalar(self.dtype, other)
new = self._dok_container(self.shape, dtype=res_dtype)
new._dict.update(((k, v / other) for k, v in self.items()))
return new
return self.tocsr() / other
def __itruediv__(self, other):
if isscalarlike(other):
self._dict.update((k, v / other) for k, v in self.items())
return self
return NotImplemented
def __reduce__(self):
# this approach is necessary because __setstate__ is called after
# __setitem__ upon unpickling and since __init__ is not called there
# is no shape attribute hence it is not possible to unpickle it.
return dict.__reduce__(self)
def diagonal(self, k=0):
if self.ndim == 2:
return super().diagonal(k)
raise ValueError("diagonal requires two dimensions")
def transpose(self, axes=None, copy=False):
if self.ndim == 1:
return self.copy()
if axes is not None and axes != (1, 0):
raise ValueError(
"Sparse arrays/matrices do not support "
"an 'axes' parameter because swapping "
"dimensions is the only logical permutation."
)
M, N = self.shape
new = self._dok_container((N, M), dtype=self.dtype, copy=copy)
new._dict.update((((right, left), val) for (left, right), val in self.items()))
return new
transpose.__doc__ = _spbase.transpose.__doc__
def conjtransp(self):
"""Return the conjugate transpose."""
if self.ndim == 1:
new = self.tocoo()
new.data = new.data.conjugate()
return new
M, N = self.shape
new = self._dok_container((N, M), dtype=self.dtype)
new._dict = {(right, left): np.conj(val) for (left, right), val in self.items()}
return new
def copy(self):
new = self._dok_container(self.shape, dtype=self.dtype)
new._dict.update(self._dict)
return new
copy.__doc__ = _spbase.copy.__doc__
@classmethod
def fromkeys(cls, iterable, value=1, /):
tmp = dict.fromkeys(iterable, value)
if isinstance(next(iter(tmp)), tuple):
shape = tuple(max(idx) + 1 for idx in zip(*tmp))
else:
shape = (max(tmp) + 1,)
result = cls(shape, dtype=type(value))
result._dict = tmp
return result
def tocoo(self, copy=False):
nnz = self.nnz
if nnz == 0:
return self._coo_container(self.shape, dtype=self.dtype)
idx_dtype = self._get_index_dtype(maxval=max(self.shape))
data = np.fromiter(self.values(), dtype=self.dtype, count=nnz)
# handle 1d keys specially b/c not a tuple
inds = zip(*self.keys()) if self.ndim > 1 else (self.keys(),)
coords = tuple(np.fromiter(ix, dtype=idx_dtype, count=nnz) for ix in inds)
A = self._coo_container((data, coords), shape=self.shape, dtype=self.dtype)
A.has_canonical_format = True
return A
tocoo.__doc__ = _spbase.tocoo.__doc__
def todok(self, copy=False):
if copy:
return self.copy()
return self
todok.__doc__ = _spbase.todok.__doc__
def tocsc(self, copy=False):
if self.ndim == 1:
raise NotImplementedError("tocsr() not valid for 1d sparse array")
return self.tocoo(copy=False).tocsc(copy=copy)
tocsc.__doc__ = _spbase.tocsc.__doc__
def resize(self, *shape):
is_array = isinstance(self, sparray)
shape = check_shape(shape, allow_1d=is_array)
if len(shape) != len(self.shape):
# TODO implement resize across dimensions
raise NotImplementedError
if self.ndim == 1:
newN = shape[-1]
for i in list(self._dict):
if i >= newN:
del self._dict[i]
self._shape = shape
return
newM, newN = shape
M, N = self.shape
if newM < M or newN < N:
# Remove all elements outside new dimensions
for i, j in list(self.keys()):
if i >= newM or j >= newN:
del self._dict[i, j]
self._shape = shape
resize.__doc__ = _spbase.resize.__doc__
# Added for 1d to avoid `tocsr` from _base.py
def astype(self, dtype, casting='unsafe', copy=True):
dtype = np.dtype(dtype)
if self.dtype != dtype:
result = self._dok_container(self.shape, dtype=dtype)
data = np.array(list(self._dict.values()), dtype=dtype)
result._dict = dict(zip(self._dict, data))
return result
elif copy:
return self.copy()
return self
def isspmatrix_dok(x):
"""Is `x` of dok_array type?
Parameters
----------
x
object to check for being a dok matrix
Returns
-------
bool
True if `x` is a dok matrix, False otherwise
Examples
--------
>>> from scipy.sparse import dok_array, dok_matrix, coo_matrix, isspmatrix_dok
>>> isspmatrix_dok(dok_matrix([[5]]))
True
>>> isspmatrix_dok(dok_array([[5]]))
False
>>> isspmatrix_dok(coo_matrix([[5]]))
False
"""
return isinstance(x, dok_matrix)
# This namespace class separates array from matrix with isinstance
class dok_array(_dok_base, sparray):
"""
Dictionary Of Keys based sparse array.
This is an efficient structure for constructing sparse
arrays incrementally.
This can be instantiated in several ways:
dok_array(D)
where D is a 2-D ndarray
dok_array(S)
with another sparse array or matrix S (equivalent to S.todok())
dok_array((M,N), [dtype])
create the array with initial shape (M,N)
dtype is optional, defaulting to dtype='d'
Attributes
----------
dtype : dtype
Data type of the array
shape : 2-tuple
Shape of the array
ndim : int
Number of dimensions (this is always 2)
nnz
Number of nonzero elements
size
T
Notes
-----
Sparse arrays can be used in arithmetic operations: they support
addition, subtraction, multiplication, division, and matrix power.
- Allows for efficient O(1) access of individual elements.
- Duplicates are not allowed.
- Can be efficiently converted to a coo_array once constructed.
Examples
--------
>>> import numpy as np
>>> from scipy.sparse import dok_array
>>> S = dok_array((5, 5), dtype=np.float32)
>>> for i in range(5):
... for j in range(5):
... S[i, j] = i + j # Update element
"""
class dok_matrix(spmatrix, _dok_base):
"""
Dictionary Of Keys based sparse matrix.
This is an efficient structure for constructing sparse
matrices incrementally.
This can be instantiated in several ways:
dok_matrix(D)
where D is a 2-D ndarray
dok_matrix(S)
with another sparse array or matrix S (equivalent to S.todok())
dok_matrix((M,N), [dtype])
create the matrix with initial shape (M,N)
dtype is optional, defaulting to dtype='d'
Attributes
----------
dtype : dtype
Data type of the matrix
shape : 2-tuple
Shape of the matrix
ndim : int
Number of dimensions (this is always 2)
nnz
Number of nonzero elements
size
T
Notes
-----
Sparse matrices can be used in arithmetic operations: they support
addition, subtraction, multiplication, division, and matrix power.
- Allows for efficient O(1) access of individual elements.
- Duplicates are not allowed.
- Can be efficiently converted to a coo_matrix once constructed.
Examples
--------
>>> import numpy as np
>>> from scipy.sparse import dok_matrix
>>> S = dok_matrix((5, 5), dtype=np.float32)
>>> for i in range(5):
... for j in range(5):
... S[i, j] = i + j # Update element
"""
def set_shape(self, shape):
new_matrix = self.reshape(shape, copy=False).asformat(self.format)
self.__dict__ = new_matrix.__dict__
def get_shape(self):
"""Get shape of a sparse matrix."""
return self._shape
shape = property(fget=get_shape, fset=set_shape)
def __reversed__(self):
return self._dict.__reversed__()
def __or__(self, other):
if isinstance(other, _dok_base):
return self._dict | other._dict
return self._dict | other
def __ror__(self, other):
if isinstance(other, _dok_base):
return self._dict | other._dict
return self._dict | other
def __ior__(self, other):
if isinstance(other, _dok_base):
self._dict |= other._dict
else:
self._dict |= other
return self