571 lines
19 KiB
Python
571 lines
19 KiB
Python
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"""Classes and functions for managing compressors."""
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import io
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import zlib
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from joblib.backports import LooseVersion
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try:
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from threading import RLock
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except ImportError:
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from dummy_threading import RLock
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try:
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import bz2
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except ImportError:
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bz2 = None
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try:
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import lz4
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from lz4.frame import LZ4FrameFile
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except ImportError:
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lz4 = None
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try:
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import lzma
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except ImportError:
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lzma = None
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LZ4_NOT_INSTALLED_ERROR = ('LZ4 is not installed. Install it with pip: '
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'https://python-lz4.readthedocs.io/')
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# Registered compressors
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_COMPRESSORS = {}
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# Magic numbers of supported compression file formats.
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_ZFILE_PREFIX = b'ZF' # used with pickle files created before 0.9.3.
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_ZLIB_PREFIX = b'\x78'
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_GZIP_PREFIX = b'\x1f\x8b'
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_BZ2_PREFIX = b'BZ'
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_XZ_PREFIX = b'\xfd\x37\x7a\x58\x5a'
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_LZMA_PREFIX = b'\x5d\x00'
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_LZ4_PREFIX = b'\x04\x22\x4D\x18'
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def register_compressor(compressor_name, compressor,
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force=False):
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"""Register a new compressor.
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Parameters
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-----------
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compressor_name: str.
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The name of the compressor.
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compressor: CompressorWrapper
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An instance of a 'CompressorWrapper'.
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"""
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global _COMPRESSORS
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if not isinstance(compressor_name, str):
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raise ValueError("Compressor name should be a string, "
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"'{}' given.".format(compressor_name))
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if not isinstance(compressor, CompressorWrapper):
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raise ValueError("Compressor should implement the CompressorWrapper "
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"interface, '{}' given.".format(compressor))
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if (compressor.fileobj_factory is not None and
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(not hasattr(compressor.fileobj_factory, 'read') or
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not hasattr(compressor.fileobj_factory, 'write') or
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not hasattr(compressor.fileobj_factory, 'seek') or
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not hasattr(compressor.fileobj_factory, 'tell'))):
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raise ValueError("Compressor 'fileobj_factory' attribute should "
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"implement the file object interface, '{}' given."
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.format(compressor.fileobj_factory))
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if compressor_name in _COMPRESSORS and not force:
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raise ValueError("Compressor '{}' already registered."
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.format(compressor_name))
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_COMPRESSORS[compressor_name] = compressor
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class CompressorWrapper():
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"""A wrapper around a compressor file object.
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Attributes
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----------
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obj: a file-like object
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The object must implement the buffer interface and will be used
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internally to compress/decompress the data.
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prefix: bytestring
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A bytestring corresponding to the magic number that identifies the
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file format associated to the compressor.
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extension: str
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The file extension used to automatically select this compressor during
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a dump to a file.
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"""
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def __init__(self, obj, prefix=b'', extension=''):
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self.fileobj_factory = obj
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self.prefix = prefix
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self.extension = extension
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def compressor_file(self, fileobj, compresslevel=None):
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"""Returns an instance of a compressor file object."""
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if compresslevel is None:
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return self.fileobj_factory(fileobj, 'wb')
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else:
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return self.fileobj_factory(fileobj, 'wb',
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compresslevel=compresslevel)
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def decompressor_file(self, fileobj):
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"""Returns an instance of a decompressor file object."""
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return self.fileobj_factory(fileobj, 'rb')
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class BZ2CompressorWrapper(CompressorWrapper):
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prefix = _BZ2_PREFIX
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extension = '.bz2'
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def __init__(self):
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if bz2 is not None:
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self.fileobj_factory = bz2.BZ2File
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else:
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self.fileobj_factory = None
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def _check_versions(self):
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if bz2 is None:
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raise ValueError('bz2 module is not compiled on your python '
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'standard library.')
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def compressor_file(self, fileobj, compresslevel=None):
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"""Returns an instance of a compressor file object."""
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self._check_versions()
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if compresslevel is None:
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return self.fileobj_factory(fileobj, 'wb')
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else:
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return self.fileobj_factory(fileobj, 'wb',
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compresslevel=compresslevel)
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def decompressor_file(self, fileobj):
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"""Returns an instance of a decompressor file object."""
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self._check_versions()
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fileobj = self.fileobj_factory(fileobj, 'rb')
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return fileobj
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class LZMACompressorWrapper(CompressorWrapper):
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prefix = _LZMA_PREFIX
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extension = '.lzma'
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_lzma_format_name = 'FORMAT_ALONE'
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def __init__(self):
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if lzma is not None:
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self.fileobj_factory = lzma.LZMAFile
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self._lzma_format = getattr(lzma, self._lzma_format_name)
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else:
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self.fileobj_factory = None
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def _check_versions(self):
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if lzma is None:
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raise ValueError('lzma module is not compiled on your python '
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'standard library.')
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def compressor_file(self, fileobj, compresslevel=None):
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"""Returns an instance of a compressor file object."""
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if compresslevel is None:
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return self.fileobj_factory(fileobj, 'wb',
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format=self._lzma_format)
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else:
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return self.fileobj_factory(fileobj, 'wb',
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format=self._lzma_format,
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preset=compresslevel)
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def decompressor_file(self, fileobj):
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"""Returns an instance of a decompressor file object."""
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return lzma.LZMAFile(fileobj, 'rb')
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class XZCompressorWrapper(LZMACompressorWrapper):
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prefix = _XZ_PREFIX
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extension = '.xz'
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_lzma_format_name = 'FORMAT_XZ'
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class LZ4CompressorWrapper(CompressorWrapper):
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prefix = _LZ4_PREFIX
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extension = '.lz4'
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def __init__(self):
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if lz4 is not None:
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self.fileobj_factory = LZ4FrameFile
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else:
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self.fileobj_factory = None
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def _check_versions(self):
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if lz4 is None:
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raise ValueError(LZ4_NOT_INSTALLED_ERROR)
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lz4_version = lz4.__version__
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if lz4_version.startswith("v"):
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lz4_version = lz4_version[1:]
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if LooseVersion(lz4_version) < LooseVersion('0.19'):
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raise ValueError(LZ4_NOT_INSTALLED_ERROR)
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def compressor_file(self, fileobj, compresslevel=None):
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"""Returns an instance of a compressor file object."""
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self._check_versions()
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if compresslevel is None:
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return self.fileobj_factory(fileobj, 'wb')
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else:
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return self.fileobj_factory(fileobj, 'wb',
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compression_level=compresslevel)
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def decompressor_file(self, fileobj):
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"""Returns an instance of a decompressor file object."""
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self._check_versions()
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return self.fileobj_factory(fileobj, 'rb')
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###############################################################################
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# base file compression/decompression object definition
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_MODE_CLOSED = 0
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_MODE_READ = 1
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_MODE_READ_EOF = 2
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_MODE_WRITE = 3
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_BUFFER_SIZE = 8192
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class BinaryZlibFile(io.BufferedIOBase):
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"""A file object providing transparent zlib (de)compression.
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TODO python2_drop: is it still needed since we dropped Python 2 support A
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BinaryZlibFile can act as a wrapper for an existing file object, or refer
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directly to a named file on disk.
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Note that BinaryZlibFile provides only a *binary* file interface: data read
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is returned as bytes, and data to be written should be given as bytes.
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This object is an adaptation of the BZ2File object and is compatible with
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versions of python >= 2.7.
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If filename is a str or bytes object, it gives the name
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of the file to be opened. Otherwise, it should be a file object,
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which will be used to read or write the compressed data.
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mode can be 'rb' for reading (default) or 'wb' for (over)writing
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If mode is 'wb', compresslevel can be a number between 1
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and 9 specifying the level of compression: 1 produces the least
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compression, and 9 produces the most compression. 3 is the default.
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"""
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wbits = zlib.MAX_WBITS
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def __init__(self, filename, mode="rb", compresslevel=3):
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# This lock must be recursive, so that BufferedIOBase's
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# readline(), readlines() and writelines() don't deadlock.
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self._lock = RLock()
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self._fp = None
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self._closefp = False
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self._mode = _MODE_CLOSED
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self._pos = 0
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self._size = -1
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self.compresslevel = compresslevel
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if not isinstance(compresslevel, int) or not (1 <= compresslevel <= 9):
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raise ValueError("'compresslevel' must be an integer "
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"between 1 and 9. You provided 'compresslevel={}'"
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.format(compresslevel))
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if mode == "rb":
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self._mode = _MODE_READ
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self._decompressor = zlib.decompressobj(self.wbits)
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self._buffer = b""
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self._buffer_offset = 0
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elif mode == "wb":
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self._mode = _MODE_WRITE
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self._compressor = zlib.compressobj(self.compresslevel,
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zlib.DEFLATED, self.wbits,
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zlib.DEF_MEM_LEVEL, 0)
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else:
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raise ValueError("Invalid mode: %r" % (mode,))
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if isinstance(filename, str):
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self._fp = io.open(filename, mode)
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self._closefp = True
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elif hasattr(filename, "read") or hasattr(filename, "write"):
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self._fp = filename
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else:
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raise TypeError("filename must be a str or bytes object, "
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"or a file")
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def close(self):
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"""Flush and close the file.
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May be called more than once without error. Once the file is
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closed, any other operation on it will raise a ValueError.
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"""
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with self._lock:
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if self._mode == _MODE_CLOSED:
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return
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try:
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if self._mode in (_MODE_READ, _MODE_READ_EOF):
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self._decompressor = None
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elif self._mode == _MODE_WRITE:
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self._fp.write(self._compressor.flush())
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self._compressor = None
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finally:
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try:
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if self._closefp:
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self._fp.close()
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finally:
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self._fp = None
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self._closefp = False
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self._mode = _MODE_CLOSED
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self._buffer = b""
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self._buffer_offset = 0
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@property
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def closed(self):
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"""True if this file is closed."""
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return self._mode == _MODE_CLOSED
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def fileno(self):
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"""Return the file descriptor for the underlying file."""
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self._check_not_closed()
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return self._fp.fileno()
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def seekable(self):
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"""Return whether the file supports seeking."""
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return self.readable() and self._fp.seekable()
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def readable(self):
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"""Return whether the file was opened for reading."""
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self._check_not_closed()
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return self._mode in (_MODE_READ, _MODE_READ_EOF)
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def writable(self):
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"""Return whether the file was opened for writing."""
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self._check_not_closed()
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return self._mode == _MODE_WRITE
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# Mode-checking helper functions.
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def _check_not_closed(self):
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if self.closed:
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fname = getattr(self._fp, 'name', None)
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msg = "I/O operation on closed file"
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if fname is not None:
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msg += " {}".format(fname)
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msg += "."
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raise ValueError(msg)
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def _check_can_read(self):
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if self._mode not in (_MODE_READ, _MODE_READ_EOF):
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self._check_not_closed()
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raise io.UnsupportedOperation("File not open for reading")
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def _check_can_write(self):
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if self._mode != _MODE_WRITE:
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self._check_not_closed()
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raise io.UnsupportedOperation("File not open for writing")
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def _check_can_seek(self):
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if self._mode not in (_MODE_READ, _MODE_READ_EOF):
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self._check_not_closed()
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raise io.UnsupportedOperation("Seeking is only supported "
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"on files open for reading")
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if not self._fp.seekable():
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raise io.UnsupportedOperation("The underlying file object "
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"does not support seeking")
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# Fill the readahead buffer if it is empty. Returns False on EOF.
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def _fill_buffer(self):
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if self._mode == _MODE_READ_EOF:
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return False
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# Depending on the input data, our call to the decompressor may not
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# return any data. In this case, try again after reading another block.
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while self._buffer_offset == len(self._buffer):
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try:
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rawblock = (self._decompressor.unused_data or
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self._fp.read(_BUFFER_SIZE))
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|
|
if not rawblock:
|
||
|
|
raise EOFError
|
||
|
|
except EOFError:
|
||
|
|
# End-of-stream marker and end of file. We're good.
|
||
|
|
self._mode = _MODE_READ_EOF
|
||
|
|
self._size = self._pos
|
||
|
|
return False
|
||
|
|
else:
|
||
|
|
self._buffer = self._decompressor.decompress(rawblock)
|
||
|
|
self._buffer_offset = 0
|
||
|
|
return True
|
||
|
|
|
||
|
|
# Read data until EOF.
|
||
|
|
# If return_data is false, consume the data without returning it.
|
||
|
|
def _read_all(self, return_data=True):
|
||
|
|
# The loop assumes that _buffer_offset is 0. Ensure that this is true.
|
||
|
|
self._buffer = self._buffer[self._buffer_offset:]
|
||
|
|
self._buffer_offset = 0
|
||
|
|
|
||
|
|
blocks = []
|
||
|
|
while self._fill_buffer():
|
||
|
|
if return_data:
|
||
|
|
blocks.append(self._buffer)
|
||
|
|
self._pos += len(self._buffer)
|
||
|
|
self._buffer = b""
|
||
|
|
if return_data:
|
||
|
|
return b"".join(blocks)
|
||
|
|
|
||
|
|
# Read a block of up to n bytes.
|
||
|
|
# If return_data is false, consume the data without returning it.
|
||
|
|
def _read_block(self, n_bytes, return_data=True):
|
||
|
|
# If we have enough data buffered, return immediately.
|
||
|
|
end = self._buffer_offset + n_bytes
|
||
|
|
if end <= len(self._buffer):
|
||
|
|
data = self._buffer[self._buffer_offset: end]
|
||
|
|
self._buffer_offset = end
|
||
|
|
self._pos += len(data)
|
||
|
|
return data if return_data else None
|
||
|
|
|
||
|
|
# The loop assumes that _buffer_offset is 0. Ensure that this is true.
|
||
|
|
self._buffer = self._buffer[self._buffer_offset:]
|
||
|
|
self._buffer_offset = 0
|
||
|
|
|
||
|
|
blocks = []
|
||
|
|
while n_bytes > 0 and self._fill_buffer():
|
||
|
|
if n_bytes < len(self._buffer):
|
||
|
|
data = self._buffer[:n_bytes]
|
||
|
|
self._buffer_offset = n_bytes
|
||
|
|
else:
|
||
|
|
data = self._buffer
|
||
|
|
self._buffer = b""
|
||
|
|
if return_data:
|
||
|
|
blocks.append(data)
|
||
|
|
self._pos += len(data)
|
||
|
|
n_bytes -= len(data)
|
||
|
|
if return_data:
|
||
|
|
return b"".join(blocks)
|
||
|
|
|
||
|
|
def read(self, size=-1):
|
||
|
|
"""Read up to size uncompressed bytes from the file.
|
||
|
|
|
||
|
|
If size is negative or omitted, read until EOF is reached.
|
||
|
|
Returns b'' if the file is already at EOF.
|
||
|
|
"""
|
||
|
|
with self._lock:
|
||
|
|
self._check_can_read()
|
||
|
|
if size == 0:
|
||
|
|
return b""
|
||
|
|
elif size < 0:
|
||
|
|
return self._read_all()
|
||
|
|
else:
|
||
|
|
return self._read_block(size)
|
||
|
|
|
||
|
|
def readinto(self, b):
|
||
|
|
"""Read up to len(b) bytes into b.
|
||
|
|
|
||
|
|
Returns the number of bytes read (0 for EOF).
|
||
|
|
"""
|
||
|
|
with self._lock:
|
||
|
|
return io.BufferedIOBase.readinto(self, b)
|
||
|
|
|
||
|
|
def write(self, data):
|
||
|
|
"""Write a byte string to the file.
|
||
|
|
|
||
|
|
Returns the number of uncompressed bytes written, which is
|
||
|
|
always len(data). Note that due to buffering, the file on disk
|
||
|
|
may not reflect the data written until close() is called.
|
||
|
|
"""
|
||
|
|
with self._lock:
|
||
|
|
self._check_can_write()
|
||
|
|
# Convert data type if called by io.BufferedWriter.
|
||
|
|
if isinstance(data, memoryview):
|
||
|
|
data = data.tobytes()
|
||
|
|
|
||
|
|
compressed = self._compressor.compress(data)
|
||
|
|
self._fp.write(compressed)
|
||
|
|
self._pos += len(data)
|
||
|
|
return len(data)
|
||
|
|
|
||
|
|
# Rewind the file to the beginning of the data stream.
|
||
|
|
def _rewind(self):
|
||
|
|
self._fp.seek(0, 0)
|
||
|
|
self._mode = _MODE_READ
|
||
|
|
self._pos = 0
|
||
|
|
self._decompressor = zlib.decompressobj(self.wbits)
|
||
|
|
self._buffer = b""
|
||
|
|
self._buffer_offset = 0
|
||
|
|
|
||
|
|
def seek(self, offset, whence=0):
|
||
|
|
"""Change the file position.
|
||
|
|
|
||
|
|
The new position is specified by offset, relative to the
|
||
|
|
position indicated by whence. Values for whence are:
|
||
|
|
|
||
|
|
0: start of stream (default); offset must not be negative
|
||
|
|
1: current stream position
|
||
|
|
2: end of stream; offset must not be positive
|
||
|
|
|
||
|
|
Returns the new file position.
|
||
|
|
|
||
|
|
Note that seeking is emulated, so depending on the parameters,
|
||
|
|
this operation may be extremely slow.
|
||
|
|
"""
|
||
|
|
with self._lock:
|
||
|
|
self._check_can_seek()
|
||
|
|
|
||
|
|
# Recalculate offset as an absolute file position.
|
||
|
|
if whence == 0:
|
||
|
|
pass
|
||
|
|
elif whence == 1:
|
||
|
|
offset = self._pos + offset
|
||
|
|
elif whence == 2:
|
||
|
|
# Seeking relative to EOF - we need to know the file's size.
|
||
|
|
if self._size < 0:
|
||
|
|
self._read_all(return_data=False)
|
||
|
|
offset = self._size + offset
|
||
|
|
else:
|
||
|
|
raise ValueError("Invalid value for whence: %s" % (whence,))
|
||
|
|
|
||
|
|
# Make it so that offset is the number of bytes to skip forward.
|
||
|
|
if offset < self._pos:
|
||
|
|
self._rewind()
|
||
|
|
else:
|
||
|
|
offset -= self._pos
|
||
|
|
|
||
|
|
# Read and discard data until we reach the desired position.
|
||
|
|
self._read_block(offset, return_data=False)
|
||
|
|
|
||
|
|
return self._pos
|
||
|
|
|
||
|
|
def tell(self):
|
||
|
|
"""Return the current file position."""
|
||
|
|
with self._lock:
|
||
|
|
self._check_not_closed()
|
||
|
|
return self._pos
|
||
|
|
|
||
|
|
|
||
|
|
class ZlibCompressorWrapper(CompressorWrapper):
|
||
|
|
|
||
|
|
def __init__(self):
|
||
|
|
CompressorWrapper.__init__(self, obj=BinaryZlibFile,
|
||
|
|
prefix=_ZLIB_PREFIX, extension='.z')
|
||
|
|
|
||
|
|
|
||
|
|
class BinaryGzipFile(BinaryZlibFile):
|
||
|
|
"""A file object providing transparent gzip (de)compression.
|
||
|
|
|
||
|
|
If filename is a str or bytes object, it gives the name
|
||
|
|
of the file to be opened. Otherwise, it should be a file object,
|
||
|
|
which will be used to read or write the compressed data.
|
||
|
|
|
||
|
|
mode can be 'rb' for reading (default) or 'wb' for (over)writing
|
||
|
|
|
||
|
|
If mode is 'wb', compresslevel can be a number between 1
|
||
|
|
and 9 specifying the level of compression: 1 produces the least
|
||
|
|
compression, and 9 produces the most compression. 3 is the default.
|
||
|
|
"""
|
||
|
|
|
||
|
|
wbits = 31 # zlib compressor/decompressor wbits value for gzip format.
|
||
|
|
|
||
|
|
|
||
|
|
class GzipCompressorWrapper(CompressorWrapper):
|
||
|
|
|
||
|
|
def __init__(self):
|
||
|
|
CompressorWrapper.__init__(self, obj=BinaryGzipFile,
|
||
|
|
prefix=_GZIP_PREFIX, extension='.gz')
|