import pytest from pytest import raises as assert_raises import numpy as np from scipy.cluster.hierarchy import DisjointSet import string def generate_random_token(): k = len(string.ascii_letters) tokens = list(np.arange(k, dtype=int)) tokens += list(np.arange(k, dtype=float)) tokens += list(string.ascii_letters) tokens += [None for i in range(k)] tokens = np.array(tokens, dtype=object) rng = np.random.RandomState(seed=0) while 1: size = rng.randint(1, 3) element = rng.choice(tokens, size) if size == 1: yield element[0] else: yield tuple(element) def get_elements(n): # dict is deterministic without difficulty of comparing numpy ints elements = {} for element in generate_random_token(): if element not in elements: elements[element] = len(elements) if len(elements) >= n: break return list(elements.keys()) def test_init(): n = 10 elements = get_elements(n) dis = DisjointSet(elements) assert dis.n_subsets == n assert list(dis) == elements def test_len(): n = 10 elements = get_elements(n) dis = DisjointSet(elements) assert len(dis) == n dis.add("dummy") assert len(dis) == n + 1 @pytest.mark.parametrize("n", [10, 100]) def test_contains(n): elements = get_elements(n) dis = DisjointSet(elements) for x in elements: assert x in dis assert "dummy" not in dis @pytest.mark.parametrize("n", [10, 100]) def test_add(n): elements = get_elements(n) dis1 = DisjointSet(elements) dis2 = DisjointSet() for i, x in enumerate(elements): dis2.add(x) assert len(dis2) == i + 1 # test idempotency by adding element again dis2.add(x) assert len(dis2) == i + 1 assert list(dis1) == list(dis2) def test_element_not_present(): elements = get_elements(n=10) dis = DisjointSet(elements) with assert_raises(KeyError): dis["dummy"] with assert_raises(KeyError): dis.merge(elements[0], "dummy") with assert_raises(KeyError): dis.connected(elements[0], "dummy") @pytest.mark.parametrize("direction", ["forwards", "backwards"]) @pytest.mark.parametrize("n", [10, 100]) def test_linear_union_sequence(n, direction): elements = get_elements(n) dis = DisjointSet(elements) assert elements == list(dis) indices = list(range(n - 1)) if direction == "backwards": indices = indices[::-1] for it, i in enumerate(indices): assert not dis.connected(elements[i], elements[i + 1]) assert dis.merge(elements[i], elements[i + 1]) assert dis.connected(elements[i], elements[i + 1]) assert dis.n_subsets == n - 1 - it roots = [dis[i] for i in elements] if direction == "forwards": assert all(elements[0] == r for r in roots) else: assert all(elements[-2] == r for r in roots) assert not dis.merge(elements[0], elements[-1]) @pytest.mark.parametrize("n", [10, 100]) def test_self_unions(n): elements = get_elements(n) dis = DisjointSet(elements) for x in elements: assert dis.connected(x, x) assert not dis.merge(x, x) assert dis.connected(x, x) assert dis.n_subsets == len(elements) assert elements == list(dis) roots = [dis[x] for x in elements] assert elements == roots @pytest.mark.parametrize("order", ["ab", "ba"]) @pytest.mark.parametrize("n", [10, 100]) def test_equal_size_ordering(n, order): elements = get_elements(n) dis = DisjointSet(elements) rng = np.random.RandomState(seed=0) indices = np.arange(n) rng.shuffle(indices) for i in range(0, len(indices), 2): a, b = elements[indices[i]], elements[indices[i + 1]] if order == "ab": assert dis.merge(a, b) else: assert dis.merge(b, a) expected = elements[min(indices[i], indices[i + 1])] assert dis[a] == expected assert dis[b] == expected @pytest.mark.parametrize("kmax", [5, 10]) def test_binary_tree(kmax): n = 2**kmax elements = get_elements(n) dis = DisjointSet(elements) rng = np.random.RandomState(seed=0) for k in 2**np.arange(kmax): for i in range(0, n, 2 * k): r1, r2 = rng.randint(0, k, size=2) a, b = elements[i + r1], elements[i + k + r2] assert not dis.connected(a, b) assert dis.merge(a, b) assert dis.connected(a, b) assert elements == list(dis) roots = [dis[i] for i in elements] expected_indices = np.arange(n) - np.arange(n) % (2 * k) expected = [elements[i] for i in expected_indices] assert roots == expected @pytest.mark.parametrize("n", [10, 100]) def test_subsets(n): elements = get_elements(n) dis = DisjointSet(elements) rng = np.random.RandomState(seed=0) for i, j in rng.randint(0, n, (n, 2)): x = elements[i] y = elements[j] expected = {element for element in dis if {dis[element]} == {dis[x]}} assert expected == dis.subset(x) expected = {dis[element]: set() for element in dis} for element in dis: expected[dis[element]].add(element) expected = list(expected.values()) assert expected == dis.subsets() dis.merge(x, y) assert dis.subset(x) == dis.subset(y)